mRNA_H-elongata_contig183793.4947.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig183793.4947.1
Unique NamemRNA_H-elongata_contig183793.4947.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig183793.4947.1 vs. uniprot
Match: D7FY11_ECTSI (NodB homology domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY11_ECTSI)

HSP 1 Score: 141 bits (355), Expect = 1.010e-39
Identity = 64/76 (84.21%), Postives = 71/76 (93.42%), Query Frame = 1
Query:    1 VYACAMALDRNPEAAKAMVDAGWEVASHGYRWIDYQYVDEETEREHIRKAVEITERVCGRRPVGIYQGKPNANTRR 228
            VYACAMAL+RNP A +AMV+AGWEVASHGYRWIDYQYVDE TEREHIRKAV+IT +VCG+RPVGIYQGKPN NTR+
Sbjct:  115 VYACAMALERNPAAGRAMVEAGWEVASHGYRWIDYQYVDEATEREHIRKAVDITAKVCGKRPVGIYQGKPNPNTRK 190          
BLAST of mRNA_H-elongata_contig183793.4947.1 vs. uniprot
Match: A0A8K1FLP4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FLP4_PYTOL)

HSP 1 Score: 130 bits (326), Expect = 2.910e-35
Identity = 59/76 (77.63%), Postives = 68/76 (89.47%), Query Frame = 1
Query:    1 VYACAMALDRNPEAAKAMVDAGWEVASHGYRWIDYQYVDEETEREHIRKAVEITERVCGRRPVGIYQGKPNANTRR 228
            VYA  +AL++NP+AAKAMV+AGWEVASHGYRWIDYQ VDE TEREHIRK +E+ ER+ G+RPVGIYQGKPN NTRR
Sbjct:   99 VYAVGLALEKNPDAAKAMVEAGWEVASHGYRWIDYQNVDEATEREHIRKTIEVHERLVGKRPVGIYQGKPNVNTRR 174          
BLAST of mRNA_H-elongata_contig183793.4947.1 vs. uniprot
Match: A0A4D9D0C2_9STRA (NodB homology domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D0C2_9STRA)

HSP 1 Score: 129 bits (325), Expect = 3.770e-35
Identity = 61/76 (80.26%), Postives = 65/76 (85.53%), Query Frame = 1
Query:    1 VYACAMALDRNPEAAKAMVDAGWEVASHGYRWIDYQYVDEETEREHIRKAVEITERVCGRRPVGIYQGKPNANTRR 228
            VYA A+AL +NPEA KAM+DAGWEVASHGYRWIDYQYV E  EREHI+KAV IT  VCG RPVGIYQGKPN NTRR
Sbjct:   96 VYAVALALAKNPEAGKAMIDAGWEVASHGYRWIDYQYVGETVEREHIQKAVAITTDVCGTRPVGIYQGKPNVNTRR 171          
BLAST of mRNA_H-elongata_contig183793.4947.1 vs. uniprot
Match: A0A7S0NBR4_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0NBR4_9CRYP)

HSP 1 Score: 127 bits (318), Expect = 7.340e-35
Identity = 57/76 (75.00%), Postives = 68/76 (89.47%), Query Frame = 1
Query:    1 VYACAMALDRNPEAAKAMVDAGWEVASHGYRWIDYQYVDEETEREHIRKAVEITERVCGRRPVGIYQGKPNANTRR 228
            VYACA+AL+RNPEAA+AMV+AGWEVASHGYRW DYQYVDE TE+EHI+ AVE+ ++  G+RP+GIYQGKPN NT R
Sbjct:   29 VYACALALERNPEAAQAMVEAGWEVASHGYRWWDYQYVDEATEKEHIKLAVEVQQKAIGQRPLGIYQGKPNENTLR 104          
BLAST of mRNA_H-elongata_contig183793.4947.1 vs. uniprot
Match: K3WUK4_GLOUD (NodB homology domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WUK4_GLOUD)

HSP 1 Score: 129 bits (323), Expect = 7.810e-35
Identity = 59/76 (77.63%), Postives = 67/76 (88.16%), Query Frame = 1
Query:    1 VYACAMALDRNPEAAKAMVDAGWEVASHGYRWIDYQYVDEETEREHIRKAVEITERVCGRRPVGIYQGKPNANTRR 228
            VYA  +AL++NP+A KAMV+AGWEVASHGYRWIDYQ VDE TEREHIRK +EI E+V G+RPVGIYQGKPN NTRR
Sbjct:   96 VYAVGLALEKNPDAGKAMVEAGWEVASHGYRWIDYQNVDEATEREHIRKTIEIHEKVIGKRPVGIYQGKPNVNTRR 171          
BLAST of mRNA_H-elongata_contig183793.4947.1 vs. uniprot
Match: A0A225X614_9STRA (Urate catabolism protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225X614_9STRA)

HSP 1 Score: 127 bits (318), Expect = 4.430e-34
Identity = 60/76 (78.95%), Postives = 65/76 (85.53%), Query Frame = 1
Query:    1 VYACAMALDRNPEAAKAMVDAGWEVASHGYRWIDYQYVDEETEREHIRKAVEITERVCGRRPVGIYQGKPNANTRR 228
            VYA  +AL++NPEAAKAM DAGWEVASHGYRWIDYQ VDE TEREHIRK V I E++ G RPVGIYQGKPN NTRR
Sbjct:   97 VYAVGLALEKNPEAAKAMKDAGWEVASHGYRWIDYQNVDEATEREHIRKTVAIHEKLLGERPVGIYQGKPNVNTRR 172          
BLAST of mRNA_H-elongata_contig183793.4947.1 vs. uniprot
Match: L1JND7_GUITC (NodB homology domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JND7_GUITC)

HSP 1 Score: 126 bits (317), Expect = 5.990e-34
Identity = 56/74 (75.68%), Postives = 67/74 (90.54%), Query Frame = 1
Query:    1 VYACAMALDRNPEAAKAMVDAGWEVASHGYRWIDYQYVDEETEREHIRKAVEITERVCGRRPVGIYQGKPNANT 222
            VYACA+AL+RNPEAA+AMV+AGWEVASHGYRW DYQYVDE TE+EHI+ AVE+ ++  G+RP+GIYQGKPN NT
Sbjct:  110 VYACALALERNPEAAQAMVEAGWEVASHGYRWWDYQYVDEATEKEHIKLAVEVQQKTIGQRPLGIYQGKPNENT 183          
BLAST of mRNA_H-elongata_contig183793.4947.1 vs. uniprot
Match: A0A2E6DI04_9DELT (Allantoinase PuuE n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A2E6DI04_9DELT)

HSP 1 Score: 126 bits (316), Expect = 8.080e-34
Identity = 57/75 (76.00%), Postives = 67/75 (89.33%), Query Frame = 1
Query:    4 YACAMALDRNPEAAKAMVDAGWEVASHGYRWIDYQYVDEETEREHIRKAVEITERVCGRRPVGIYQGKPNANTRR 228
            +A A+AL++NP+ A AMVDAGWE+ASHGYRWIDYQYVD +TEREHIRKAVEI ER+ G RP+GIYQGKP+ NTRR
Sbjct:  104 FAVALALEKNPDVAAAMVDAGWEIASHGYRWIDYQYVDIDTEREHIRKAVEIQERISGARPLGIYQGKPSPNTRR 178          
BLAST of mRNA_H-elongata_contig183793.4947.1 vs. uniprot
Match: A0A7S0Z2V4_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0Z2V4_9CRYP)

HSP 1 Score: 119 bits (297), Expect = 2.590e-33
Identity = 55/76 (72.37%), Postives = 63/76 (82.89%), Query Frame = 1
Query:    1 VYACAMALDRNPEAAKAMVDAGWEVASHGYRWIDYQYVDEETEREHIRKAVEITERVCGRRPVGIYQGKPNANTRR 228
            VYACA+AL+RNPEA  AMV+AGWEVA+HGYRW DYQ VDE TER+HI +AV + +RV G RPVGIYQGKP  NT R
Sbjct:    1 VYACALALERNPEAGAAMVEAGWEVATHGYRWWDYQNVDEATERDHIARAVSVQKRVTGTRPVGIYQGKPGPNTLR 76          
BLAST of mRNA_H-elongata_contig183793.4947.1 vs. uniprot
Match: A0A3R7H4B2_9STRA (NodB homology domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7H4B2_9STRA)

HSP 1 Score: 124 bits (311), Expect = 3.550e-33
Identity = 58/76 (76.32%), Postives = 66/76 (86.84%), Query Frame = 1
Query:    1 VYACAMALDRNPEAAKAMVDAGWEVASHGYRWIDYQYVDEETEREHIRKAVEITERVCGRRPVGIYQGKPNANTRR 228
            VYA  +AL++NPEAA+AM  AGWEVASHGYRWIDYQ VDE TEREHIRK VEI E++ G+RPVGIYQGKPN NTR+
Sbjct:  101 VYAVGLALEQNPEAAQAMKKAGWEVASHGYRWIDYQNVDETTEREHIRKTVEIHEKLLGKRPVGIYQGKPNVNTRK 176          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig183793.4947.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FY11_ECTSI1.010e-3984.21NodB homology domain-containing protein n=1 Tax=Ec... [more]
A0A8K1FLP4_PYTOL2.910e-3577.63Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A4D9D0C2_9STRA3.770e-3580.26NodB homology domain-containing protein n=2 Tax=Mo... [more]
A0A7S0NBR4_9CRYP7.340e-3575.00Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
K3WUK4_GLOUD7.810e-3577.63NodB homology domain-containing protein n=1 Tax=Gl... [more]
A0A225X614_9STRA4.430e-3478.95Urate catabolism protein n=1 Tax=Phytophthora mega... [more]
L1JND7_GUITC5.990e-3475.68NodB homology domain-containing protein n=1 Tax=Gu... [more]
A0A2E6DI04_9DELT8.080e-3476.00Allantoinase PuuE n=1 Tax=Myxococcales bacterium T... [more]
A0A7S0Z2V4_9CRYP2.590e-3372.37Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A3R7H4B2_9STRA3.550e-3376.32NodB homology domain-containing protein n=3 Tax=Ph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig183793contigH-elongata_contig183793:424..1110 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score132.1
Seed ortholog evalue1e-28
Seed eggNOG ortholog2880.D7FY11
EggNOG free text desc.Polysaccharide deacetylase
EggNOG OGs2QQRF@2759,COG0726@1
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size228
Cds size213
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig183793.4947.1prot_H-elongata_contig183793.4947.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig183793 424..1095 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930054.2815986-CDS-H-elongata_contig183793:423..5651622930054.2815986-CDS-H-elongata_contig183793:423..565Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig183793 424..565 -
1691679262.9350636-CDS-H-elongata_contig183793:423..5651691679262.9350636-CDS-H-elongata_contig183793:423..565Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig183793 424..565 -
1622930054.2954059-CDS-H-elongata_contig183793:1024..10951622930054.2954059-CDS-H-elongata_contig183793:1024..1095Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig183793 1025..1095 -
1691679262.9436433-CDS-H-elongata_contig183793:1024..10951691679262.9436433-CDS-H-elongata_contig183793:1024..1095Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig183793 1025..1095 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930054.3102994-UTR-H-elongata_contig183793:1095..11101622930054.3102994-UTR-H-elongata_contig183793:1095..1110Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig183793 1096..1110 -
1691679262.951175-UTR-H-elongata_contig183793:1095..11101691679262.951175-UTR-H-elongata_contig183793:1095..1110Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig183793 1096..1110 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig183793.4947.1

>prot_H-elongata_contig183793.4947.1 ID=prot_H-elongata_contig183793.4947.1|Name=mRNA_H-elongata_contig183793.4947.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=71bp
MALDRNPEAAKAMVDAGWEVASHGYRWIDYQYVDEETEREHIRKAVEITE
RVCGRRPVGIYQGKPNANTRR
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mRNA from alignment at H-elongata_contig183793:424..1110-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig183793.4947.1 ID=mRNA_H-elongata_contig183793.4947.1|Name=mRNA_H-elongata_contig183793.4947.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=687bp|location=Sequence derived from alignment at H-elongata_contig183793:424..1110- (Himanthalia elongata Himel1 dioecious)
GTCTACGCCTGCGCGATGGCGCTGGACAGAAACCCCGAGGCCGCCAAGGC GATGGTAGACGCCGGTTGGGAGGTGGCATCGCACGGGTGAGAATCCGCGC CAGAGGGGACCCGCAGCCAACCAATCAACCAACCAACCAGCCAACCTGAC ATCGGCTGTTCACAAGAAATAAAATTGCCCAAATAACTATAATAGCAACA TGAGACATGAACTAAGAGCCACCACCACAAACAAAGCAGCACACGCTTTT CCCGCCGTTTCTTGTTTGGTATTTTTTAATATCGAGGGCAGAAGAAGGCA CACCCACCGCTGTTCCTTGCGCGAGGGGGGGGGGCACACGACCCCTTTCA GAGCACAGGGGAGCATACCACGCGCGGGTATTTTTTCTCCGTCTTCTTCC TTGAATGCTCCGCCATCGCTCGCTGTGGTACCTACCTCGGGAAAATGTTT TTGGAGCACGGCTTCATCACGCTGTACCTCCTACCTCGATGTCTGCTGCT GCTGCTGCTGCTGCCAACGCCGCCACCGTTCGAAACCCCTTTCAGGTACC GTTGGATCGACTACCAGTACGTCGATGAAGAGACCGAGCGCGAGCACATT CGCAAGGCGGTAGAGATCACCGAGCGGGTGTGCGGAAGAAGGCCGGTGGG CATCTACCAGGGCAAGCCAAACGCGAACACTCGAAGG
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Coding sequence (CDS) from alignment at H-elongata_contig183793:424..1110-

>mRNA_H-elongata_contig183793.4947.1 ID=mRNA_H-elongata_contig183793.4947.1|Name=mRNA_H-elongata_contig183793.4947.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=426bp|location=Sequence derived from alignment at H-elongata_contig183793:424..1110- (Himanthalia elongata Himel1 dioecious)
ATGGCGCTGGACAGAAACCCCGAGGCCGCCAAGGCGATGGTAGACGCCGG
TTGGGAGGTGGCATCGCACGGATGGCGCTGGACAGAAACCCCGAGGCCGC
CAAGGCGATGGTAGACGCCGGTTGGGAGGTGGCATCGCACGGGTACCGTT
GGATCGACTACCAGTACGTCGATGAAGAGACCGAGCGCGAGCACATTCGC
AAGGCGGTAGAGATCACCGAGCGGGTGTGCGGAAGAAGGCCGGTGGGCAT
CTACCAGGGCAAGCCAAACGCGAACACTCGAAGGGTACCGTTGGATCGAC
TACCAGTACGTCGATGAAGAGACCGAGCGCGAGCACATTCGCAAGGCGGT
AGAGATCACCGAGCGGGTGTGCGGAAGAAGGCCGGTGGGCATCTACCAGG
GCAAGCCAAACGCGAACACTCGAAGG
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