mRNA_H-elongata_contig182169.4882.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig182169.4882.1 vs. uniprot
Match: A0A6H5KEM4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEM4_9PHAE) HSP 1 Score: 143 bits (360), Expect = 9.400e-37 Identity = 97/293 (33.11%), Postives = 152/293 (51.88%), Query Frame = 1
Query: 16 DLDMAYLEANVEEEIYVELPEAYRDSRKQVGLLKKAMYGLVHAGLL*SKTFGIELEAKGFQRSQADPCVFRRILHGLVVVVIMVFVDDLLVASATKRDEEQAVRDLCSCFPIKDLGEALYYLGCHITRDLGIIYGGEPGGGT----KLSALVDADFGT-----------------------------CPDTCRSVSGGAVMMAGGAISWFSRVQK-VTAAASSESEYPALAEMVNELRFLRQVGEFMTLPIDV-AIKIHEDNEGAIKMAKHRFSSRRTRHVNIKHHIVRDAIE 789
D++ A++ + +EE++Y+ LP+A + L K++YGL A L G ++ AD CVFR I +G VV++++V VDD+ +R ++ DL P+K+LGE +Y GC R+ Y E GGT L DADF + RSVSGG V GGA+SWFSR QK VT + ++E+EY L ++V ++ FLRQ+ FM + + I I EDN+GAI++A++ S+ ++H +++HH +R+ +E
Sbjct: 17 DIEQAFVRSELEEDVYMRLPQACGALSGMIVKLGKSLYGLRQASRQWHAMLKRCLVELGSEQYMADACVFRLIENGCVVLILVVHVDDIFTVRERERYDKFGT-DLSKSVPVKNLGELRWYSGCFYERNKETEY--EVVGGTVEGFSLRGYADADFASKAADLGIXIFETMRGGRVTLGKXXXXXXXXXXXRRSVSGGIVTCGGGAVSWFSRRQKCVTLSTTTEAEYVVLGDVVKKILFLRQIWRFMLPQVGMPCIPIFEDNQGAIQLAQNPISNSNSKHTDVRHHFLRELVE 306
BLAST of mRNA_H-elongata_contig182169.4882.1 vs. uniprot
Match: A0A6H5KIL0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIL0_9PHAE) HSP 1 Score: 137 bits (345), Expect = 1.140e-32 Identity = 106/334 (31.74%), Postives = 154/334 (46.11%), Query Frame = 1
Query: 55 EIYVELPEAYRDSRKQVGLLKKAMYGLVHAG------LL*SKTFGIELEAKGFQRSQADPCVFRRILHGLVVVVIMVFVDDLLVASATKRDEEQAVRDLCSCFPIKDLGEALYYLGCHITRD----------------LGIIYGGEPGGGTKLSA-----------------------------------------------------------------LVDADFGTCPDTCRSVSGGAVMMAGGAISWFSRVQKVTAAASSESEYPALAEMVNELRFLRQVGEFMTLPIDV--AIKIHEDNEGAIKMAKHRFSSRRTRHVNIKHHIVRDAIE 789
+I + +PE ++ L K++YGL A L K L A GF++ ADPCVFR + G VV++++V DD+ A TK +Q +DL P+K LGE +Y GC+ RD LG YG E GGG L VDAD+ + RSVSGG VM AGGAI+WFS+ QK +++++EY A+A+M E+ FLRQV FM LP ++ I ++EDNEGAI++AKH S+ ++H++++HH +R ++
Sbjct: 699 DICMRMPEGRGALSGKIVQLNKSLYGLRQASREWEWYALLKKC----LLALGFEQCMADPCVFRFVEGGEVVLLLVVHADDIF-AVGTKERCDQFGKDLGEYVPVKSLGELKWYSGCYYERDREAGRLTISQQTYTEELGERYGVEWGGGIPLPTTWKLWDFDADEPSVEHPFRALVGSLLWIALLTRPDIANSVRAVARTSSFGISFQRGTVSGFSLITFVDADYASVAADRRSVSGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILFLRQVWRFM-LPKELRPCIPLYEDNEGAIQIAKHPVSNSNSKHIDVRHHFLRQLVD 1026
BLAST of mRNA_H-elongata_contig182169.4882.1 vs. uniprot
Match: H3HA00_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HA00_PHYRM) HSP 1 Score: 135 bits (341), Expect = 1.430e-32 Identity = 89/268 (33.21%), Postives = 152/268 (56.72%), Query Frame = 1
Query: 10 QLDLDMAYLEANVEEEIYVELPEAY--RDSRKQVGLLKKAMYGLVHAGLL*SKTFGIELEAKGFQRSQADPCVFRRILHGLVVVVIMVFVDDLLVASATKRDEEQAVRDLCSCFPIKDLGEALYYLGCHITRDLGIIYGGEPGGGTKLSALVDADFGTCPDTCRSVSGGAVMMAGGAISWFSRVQKVTAAASSESEYPALAEMVNELRFLR----QVGEFMTLPIDVAIKIHEDNEGAIKMAKHRFSSRRTRHVNIKHHIVRDAIEGG 795
Q+D+ A+L ++E+IY+ P+ Y D V LK+++YGL + + ++T + GF++ ++D CV+ + G ++ + ++VDDL++AS+ E L F + DLGE Y+LG I +D ++ G TK + D ++ SG A MM GG ISW S+ Q+ A +S+E+EY AL+E E +L+ ++GE + D A+KI+EDN+G+I +AK+ +RT+H++I++H VR+ +E G
Sbjct: 267 QMDVKTAFLNGVLDEDIYMAQPDGYVDEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLK-RDGQDMIFVALYVDDLVLASSNDELLESTKHALSKRFEMTDLGELEYFLGMEIEQD--VVTGKMSMRQTKFAK----------DILQNTSGYAFMMNGGCISWRSKKQRTVALSSTEAEYMALSEATQEAVWLKVFLCELGEMAS---DEAVKIYEDNQGSIALAKNPQFHKRTKHIDIRYHFVREKVEDG 518
BLAST of mRNA_H-elongata_contig182169.4882.1 vs. uniprot
Match: A0A6H5K7Y0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Y0_9PHAE) HSP 1 Score: 137 bits (344), Expect = 1.710e-32 Identity = 89/260 (34.23%), Postives = 139/260 (53.46%), Query Frame = 1
Query: 16 DLDMAYLEANVEEEIYVELPEAYRDSRKQVGLLKKAMYGLVHAGLL*SKTFGIELEAKGFQRSQADPCVFRRILHGLVVVVIMVFVDDLLVASATKRDEEQAVRDLCSCFPIKDLGEALYYLGCHITRDLGIIYGGEPGGGTKLSALVDADFGTCPDTCRSVSGGAVMMAGGAISWFSRVQKVTAAASSESEYPALAEMVNELRFLRQVGEFMTLPIDV--AIKIHEDNEGAIKMAKHRFSSRRTRHVNIKHHIVRDAIE 789
D+D A++ A ++E+I++ LPE ++ L K++YGL A L A GF++ AD CVF + G VV++++V VDD+ A TK +Q +DL P+K LGE + SVSGG VM AGGAI+WFS+ QK ++++++Y A+A+M E+ LRQV FM LP ++ I +HEDNEGAI++AKH S+ ++H++++HH +R ++
Sbjct: 1528 DIDQAFVRAPLKEDIFMRLPEGCGALSGKIVQLNKSLYGLRQASREWYALLKKCLLALGFEQCMADSCVFHLVEGGEVVLLLVVHVDDIF-AVGTKERCDQFGKDLGEYVPVKSLGELKW----------------------------------------SVSGGVVMCAGGAIAWFSKTQKCVTLSTTQADYVAMADMGKEILLLRQVWRFM-LPKELRPCIPLHEDNEGAIQVAKHPISNSNSKHIDVRHHFLRQLVD 1745
BLAST of mRNA_H-elongata_contig182169.4882.1 vs. uniprot
Match: A0A8H6GDH3_FUSOX (Uncharacterized protein n=1 Tax=Fusarium oxysporum f. sp. conglutinans TaxID=100902 RepID=A0A8H6GDH3_FUSOX) HSP 1 Score: 127 bits (319), Expect = 3.510e-29 Identity = 82/281 (29.18%), Postives = 150/281 (53.38%), Query Frame = 1
Query: 1 EARQLDLDMAYLEANVEEEIYVELPEA---YRD----------SRKQVGLLKKAMYGLVHAGLL*SKTFGIELEAKGFQRSQADPCVFRRILHGLVVVVIMVFVDDLLVASATKRDEEQAVRDLCSCFPIKDLGEALYYLGCHITRDLGIIYGG---EPGGGTKLSALVDADFGTCPDTCRSVSGGAVMMAGGAISWFSRVQKVTAAASSESEYPALAEMVNELRFLRQVGEFMTLPIDVAIKIHEDNEGAIKMAKHRFSSRRTRHVNIKHHIVRDAIEGG 795
E Q+D+ A+LE +++EE+++E+PE Y D S +++ L K++YGL A K LE+ F+++ +D V+ G V+I+ +VDD L+ + K + L F + DLG ++LG TRD G++ GG +P ++A D+D+ T RS G V + G +SW ++ + A +++E+EY AL++ EL + R + + LP+ + I ++ DN+G++K+ ++ +RT+H+ + H +R+ +E G
Sbjct: 1026 EIEQMDVSTAFLEGDLDEEVFIEMPEGLVEYFDQHPEDRPPGFSTEKICKLIKSLYGLKQAPRQWQKKLKETLESLDFRQATSDTAVYHNPTTG---VIIITYVDDFLIMGSNKEAIQGYKARLGEIFTMTDLGPVSHFLGQ--TRDHGLVLGGVKKDPESAWSITAWADSDWKGDTVTGRSTFGWLVQLEGSTVSWRAKRHETVALSTTEAEYTALSQCARELAWTRNLFSELLLPLHMPIPLNGDNQGSLKLCRNPELHQRTKHIPLTEHHIREEVEAG 1301
BLAST of mRNA_H-elongata_contig182169.4882.1 vs. uniprot
Match: A0A6H5KJP2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJP2_9PHAE) HSP 1 Score: 123 bits (308), Expect = 8.770e-29 Identity = 86/301 (28.57%), Postives = 147/301 (48.84%), Query Frame = 1
Query: 16 DLDMAYLEANVEEEIYVELPEAYRDSRKQVGLLKKAMYGLVHAGLL*SKTFGIELEAKGFQRSQADPCVFRRILHGLVVVVIMVFVDDLLVASA-------TKRDEEQAVRDLCSCFPIKDLGEALYYLGCHITRDL-----------------------------------GIIYGGEPGGGTKLSALVDADFGTCPDTCRSVSGGAVMMAGGAISWFSRVQKVTAAASSESEYPALAEMVNELRFLRQVGEFMTLPIDVA-IKIHEDNEGAIKMAKHRFSSRRTRHVNIKHHIVRDAIE 789
D+ A++++ +E+++++ LP+ + L K++YGL A L GF + AD CVFR + G V+++I+V V L+ + T DE +A C+ P ++L +L +L D+ GI + G + VDAD + RSVSGG VM GG ++WFSR QK +++E EY A+A+++ E+ FLRQV M L D++ I + EDN+GAI++A + ++ ++H++++HH +R+ +E
Sbjct: 39 DIQQAFVQSELEDDVFMRLPQGCGRLSGLIVKLYKSLYGLKQASRQWHAHLTKCLLLLGFVQCLADACVFRLMEDGCVIMIIVVHVGFLMWLATXPVSVKLTDFDENEA----CADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADNASKAADRRSVSGGVVMCGGGGVTWFSRTQKCVTLSTTEVEYVAIADVLKEVLFLRQVWRLMLLDADMSCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVE 335
BLAST of mRNA_H-elongata_contig182169.4882.1 vs. uniprot
Match: A0A6H5JP36_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP36_9PHAE) HSP 1 Score: 125 bits (315), Expect = 1.020e-28 Identity = 89/268 (33.21%), Postives = 144/268 (53.73%), Query Frame = 1
Query: 1 EARQLDLDMAYLEANVEEEIYVELPEAYRDSRKQVGLLKKAMYGLVHAGLL*SKTFGIELEAKGFQRSQADPCVFRRILHGLVVVVIMVFVDDLLVASATKRDEEQAVRDLCSCFPIKDLGEALYYLGCHITRD--LGIIYGGEPGGGTKLSALVDADFGTCPDTCRSVSGGAVMMAGGAISWFSRVQKVTAAASSESEYPALAEMVNELRFLRQVGEFMTLPIDVA-IKIHEDNEGAIKMAKHRFSSRRTRHVNIKHHIVRDAIEGG 795
E LD++ A++++ ++ E++++LP ++ L K+ YGL A K +L GF++S +DPCV R ++ V+ +I + VDD+L A TKR E V L P ++LGE +LGC +RD G I + G S D+ F P RS + AG +SWFS QK + ++SE+EY A+ + V E F+ + +F+ I + EDNEGAI +A++ SS R++H++++HH +R+ E G
Sbjct: 253 ELLHLDIEQAFVQSKLDHEVFMKLPPGCDSMSGKIVRLNKSWYGLKQASRTFYKRLVSDLLRIGFEQSLSDPCVLRFMMGDEVMGIIAIHVDDILYAG-TKRLAEVIVEALGDSLPTRNLGEVRLFLGCAFSRDREAGTIEISQEG--YIRSVFRDSIF-VAP--ARSPLPLPTIAAGCLVSWFSWTQKCVSLSTSEAEYIAMGDGVKEALFVNGMLQFLRPSAKPRKIDVFEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEG 514
BLAST of mRNA_H-elongata_contig182169.4882.1 vs. uniprot
Match: A0A6H5KBK7_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBK7_9PHAE) HSP 1 Score: 125 bits (315), Expect = 1.080e-28 Identity = 83/235 (35.32%), Postives = 135/235 (57.45%), Query Frame = 1
Query: 112 LKKAMYGLVHAGLL*SKTFGIE----LEAKGFQRSQADPCVFRRILHGLVVVVIMVFVDDLLVASATKRDEEQAVRDLCSCFPIKDLGEALYYLGCHITRDLGIIYGGEPGGGTKLS--ALVDADFGTCPDTCRSVSGGAVMMAGGAISWFSRVQKVTAAASSESEYPALAEMVNELRFLRQVGEFMTLPIDVA-IKIHEDNEGAIKMAKHRFSSRRTRHVNIKHHIVRDAIEGG 795
+++A+YGL +G + +G E L G+++ + DPCVFR+++ G VV +I+++VDD+LVA A + + E+ L FP+KDLGE +Y GC I D+ G TKLS +++ RS +G AV + G + F++ Q VTA ++SE+EY A E V E F+ V F+ A IK+ EDN+GA+ + ++ FSS R++H+++ H +R+ + G
Sbjct: 821 VERALYGLKQSG----REWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVA-ADEGEREELFAALNKKFPVKDLGECTWYDGCAIAMDV-------ENGVTKLSRTGYIESVLKR-----RSTTGSAVTVRGTVVCAFTKTQPVTAQSTSEAEYVAAGEGVKEAVFVLGVLSFIAPEASGAKIKVLEDNKGALALIENPFSSARSKHIDVGFHFIRELFKSG 1038
BLAST of mRNA_H-elongata_contig182169.4882.1 vs. uniprot
Match: A0A6H5L6V8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6V8_9PHAE) HSP 1 Score: 121 bits (304), Expect = 3.250e-27 Identity = 87/321 (27.10%), Postives = 145/321 (45.17%), Query Frame = 1
Query: 16 DLDMAYLEANVEEEIYVELPEAYRDSRKQVGLLKKAMYGLVHAGLL*SKTFGIELEAKGFQRSQADPCVFRRILHGLVVVVIMVFVDDLLVASATKRDEEQAVR---------------------------DLCSCFPIKDLGEALYYLGCHITRDL-----------------------------------GIIYGGEPGGGTKLSALVDADFGTCPDTCRSVSGGAVMMAGGAISWFSRVQKVTAAASSESEYPALAEMVNELRFLRQVGEFMTLPIDV-AIKIHEDNEGAIKMAKHRFSSRRTRHVNIKHHIVRDAIE 789
D++ A++ + +EE++Y+ LP+ + L K++YGL A L A GF++ AD CVFR I G VV++++V VDD+ +R ++ ++ + +P + L +L +L D+ GI G L DADF + RSVSGG V GGA+SWFSR QK +++E+EY AL ++VN++ FL Q+ FM + + I + EDN+GAI++ ++ S+ ++H+++ HH +R+ E
Sbjct: 973 DIEQAFVRSELEEDVYMRLPQGCGALSGMIVKLGKSLYGLRQASRQWHAMLKRCLVALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFAVGERERCDKLGADLNKVYGVVGGENVPMSSGVKLPDFDADEMETDYPFRQLVGSLMWLATQTRPDIANAVRAVARYCSSPKQVHWDAAIGILGYARRTSHFGISLQRRTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVNDMLFLSQIWHFMLPQVGMPCIPVFEDNQGAIQLVQNPISNSNSKHIDVWHHFLRELEE 1293
BLAST of mRNA_H-elongata_contig182169.4882.1 vs. uniprot
Match: F2U4Z5_SALR5 (Integrase catalytic domain-containing protein n=2 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U4Z5_SALR5) HSP 1 Score: 119 bits (298), Expect = 1.700e-26 Identity = 83/269 (30.86%), Postives = 136/269 (50.56%), Query Frame = 1
Query: 10 QLDLDMAYLEANVEEEIYVELPEAYRD----SRKQVGL---LKKAMYGLVHAGLL*SKTFGIELEAKGFQRSQADPCVFRRILHGLVVVVIMVFVDDLLVASATKRDEEQAVRDLCSCFPIKDLGEALYYLGCHITRDLGIIYGGEPGGGTKLSALVDADFGTCPDTCRSVSGGAVMMAGGAISWFSRVQKVTAAASSESEYPALAEMVNELRFLRQVGEFMTLPIDVAIKIHEDNEGAIKMAKHRFSSRRTRHVNIKHHIVRDAIEGG 795
QLD AYL+A+++EE+Y+ELP + D +++ G L K +YGL AG +K L+ G+ +S D C+F ++ I+ +VDDL+++ +++R + + F +DLG G TR + L DA FGT T RS +G + G +SW SR+Q A +++E+EY A++ ++ FLRQ+ + P A K+ DN+ AI + + RT+H+ ++HH VR+ I G
Sbjct: 447 QLDFKSAYLQADLKEELYMELPPHFTDIGDGAQRYAGKVCRLLKPLYGLKQAGRAWAKKLHTFLKTNGWAQSNVDACLFTKLHDDGQRTWIITYVDDLIISGSSERHIRACKQQIKESFEAEDLGPLTCRTG---TRKHQL----------DLVCYSDASFGTDQLTGRSTTGFTCYINGCLVSWSSRLQPTVALSTAEAEYMAISAAAQDVVFLRQLLMDLDEPEAGATKMLTDNQAAIAIGNDHVTKPRTKHIRVRHHFVRELIADG 702 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig182169.4882.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig182169.4882.1 >prot_H-elongata_contig182169.4882.1 ID=prot_H-elongata_contig182169.4882.1|Name=mRNA_H-elongata_contig182169.4882.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=179bp MVFVDDLLVASATKRDEEQAVRDLCSCFPIKDLGEALYYLGCHITRDLGIback to top mRNA from alignment at H-elongata_contig182169:10..884+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig182169.4882.1 ID=mRNA_H-elongata_contig182169.4882.1|Name=mRNA_H-elongata_contig182169.4882.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=875bp|location=Sequence derived from alignment at H-elongata_contig182169:10..884+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig182169:10..884+ >mRNA_H-elongata_contig182169.4882.1 ID=mRNA_H-elongata_contig182169.4882.1|Name=mRNA_H-elongata_contig182169.4882.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1074bp|location=Sequence derived from alignment at H-elongata_contig182169:10..884+ (Himanthalia elongata Himel1 dioecious)back to top |