prot_H-elongata_contig182169.4882.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig182169.4882.1
Unique Nameprot_H-elongata_contig182169.4882.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length179
Homology
BLAST of mRNA_H-elongata_contig182169.4882.1 vs. uniprot
Match: A0A6H5KIJ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIJ7_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 3.180e-26
Identity = 56/140 (40.00%), Postives = 86/140 (61.43%), Query Frame = 0
Query:   38 YYLGCHITRDLGIIYGGEPGGGTKLSALVDADFGTCPDTCRSVSGGAVMMAGGAISWFSRVQKVTAAASSESEYPALAEMVNELRFLRQVGEFMTLPIDV-AIKIHEDNEGAIKMAKHRFSSRRTRHVNIKHHIVRDAIE 176
            Y+  C     L        GGG KL+   DADF +     RSVSGG V   GG++SWFSR QK    +++E+EY AL ++V E+ FLRQ+  FM   + +  I I EDN+GAI++A++  S+  ++H++++HH +R+ +E
Sbjct:   49 YFRLCEEDESLWYFVSERYGGGIKLAGYADADFASKAANRRSVSGGIVTCGGGSVSWFSRTQKCVTLSTTEAEYVALGDVVKEIIFLRQIWRFMLPQVGMPCIPIFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVE 188          
BLAST of mRNA_H-elongata_contig182169.4882.1 vs. uniprot
Match: A0A6H5JTQ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTQ9_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 3.370e-25
Identity = 64/166 (38.55%), Postives = 93/166 (56.02%), Query Frame = 0
Query:   23 DLCSCFPIKDLGEALYYLGCHITRDLG-----------IIYGGEPGGGTKLSALVDADFGTCPDTCRSVSGGAVMMAGGAISWFSRVQKVTAAASSESEYPALAEMVNELRFLRQVGEFMTLPIDV-AIKIHEDNEGAIKMAKHRFSSRRTRHVNIKHHIVRDAIE 176
            DL    P+K+LGE  +Y GC   R+ G                + G G  L    DADF +     RSVSGG V   GGA+SWFSR QK    + +E+EY AL  +V E  FLRQ+  FM   + +  I + ED++GAI++A++  SS  ++H+N++HH +R+ +E
Sbjct:  871 DLNKSVPVKNLGELRWYSGCSYERNKGDRLCEEDESLWYFISEKCGKGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKGVTLSETEAEYFALGGIVKETLFLRQIWRFMLPQVGMPCIPVFEDSQGAIQLAQNPISSSNSKHINVRHHCLRELVE 1036          
BLAST of mRNA_H-elongata_contig182169.4882.1 vs. uniprot
Match: A0A6H5L5J6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5J6_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 4.340e-25
Identity = 75/204 (36.76%), Postives = 108/204 (52.94%), Query Frame = 0
Query:    3 FVDDLLVASATKRDEEQAVRDLCSCFPIKDLGE---------------------------ALYYLGCHI-TRDLGIIYGGEPGGGTKLSALVDADFGTCPDTCRSVSGGAVMMAGGAISWFSRVQKVTAAASSESEYPALAEMVNELRFLRQVGEFMTLPIDV--AIKIHEDNEGAIKMAKHRFSSRRTRHVNIKHHIVRDAIE 176
            FV   L +  TK   +Q  +DL    P K LGE                           AL  LG  + T  LGI +      G  L A VDAD+ +     RSVSGG VM AGGAI+WFS+ Q+    +++++EY A+A+M   + FLRQV  FM LP ++     +HEDNEGAI++AKH  S+  ++H++++HH +R  ++
Sbjct:  328 FVGPHLESVGTKERCDQFGKDLGEYVPAKSLGELKWPDIANSVRAVVRYCSAPKLINWKAALRILGYAVRTSSLGISFQRRTVSGFSLIAFVDADYASRAADRRSVSGGVVMCAGGAIAWFSKTQECVTLSTTQAEYVAMADMGKVILFLRQVWRFM-LPKELRPCSPLHEDNEGAIQIAKHPISNSNSKHIDVRHHFLRQLVD 530          
BLAST of mRNA_H-elongata_contig182169.4882.1 vs. uniprot
Match: A0A6H5JWK8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWK8_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 5.450e-25
Identity = 70/176 (39.77%), Postives = 104/176 (59.09%), Query Frame = 0
Query:    7 LLVASATKRDEEQAVRDL---CSCFPIKDLGEALYYLGCHI-TRDLGIIYGGEPGGGTKLSALVDADFGTCPDTCRSVSGGAVMMAGGAISWFSRVQKVTAAASSESEYPALAEMVNELRFLRQVGEFMTLPIDV--AIKIHEDNEGAIKMAKHRFSSRRTRHVNIKHHIVRDAIE 176
            L VA  T+ D   AVR +   CS   +     AL  LG  + T   GI +      G  L    DAD+ +     RSVSGG VM AGGAI+WFS+ QK    +++++EY A+A+M  E+ FLR+V  FM LP ++   I ++EDNEGAI++AKH  S+  ++H++++HH +R  ++
Sbjct:  171 LWVALLTRPDIANAVRAVARYCSEPKLIHWRAALGILGYAVRTSSFGISFQRGTVSGFSLITFADADYASRAADRRSVSGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILFLREVWRFM-LPKELRPCIPLYEDNEGAIQIAKHPISNSNSKHIDVRHHFLRQLVD 345          
BLAST of mRNA_H-elongata_contig182169.4882.1 vs. uniprot
Match: A0A6H5JR13_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR13_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 1.060e-24
Identity = 71/176 (40.34%), Postives = 104/176 (59.09%), Query Frame = 0
Query:    7 LLVASATKRDEEQAVRDL---CSCFPIKDLGEALYYLGCHI-TRDLGIIYGGEPGGGTKLSALVDADFGTCPDTCRSVSGGAVMMAGGAISWFSRVQKVTAAASSESEYPALAEMVNELRFLRQVGEFMTLPIDV--AIKIHEDNEGAIKMAKHRFSSRRTRHVNIKHHIVRDAIE 176
            L VA  T+ D   AVR +   CS   +     AL  LG  + T   GI +      G  L    DAD+ +     RSVSGG VM AGGAI+WFS+ QK    +++++EY A+A+M  E+ FLRQV  FM LP ++   I ++EDNEGAI++AKH  S+  ++H++++HH +R  ++
Sbjct:  475 LWVALLTRPDIANAVRAVARYCSEPKLIHWRAALGILGYAVRTSSFGISFQRGTVSGFSLITFADADYASRAADRRSVSGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILFLRQVWRFM-LPKELRPCIPLYEDNEGAIQIAKHPISNSNSKHIDVRHHFLRQLVD 649          
BLAST of mRNA_H-elongata_contig182169.4882.1 vs. uniprot
Match: A0A6H5L8D6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8D6_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 1.740e-24
Identity = 67/173 (38.73%), Postives = 99/173 (57.23%), Query Frame = 0
Query:    9 VASATKRDEEQAVRDL---CSCFPIKDLGEALYYLG-CHITRDLGIIYGGEPGGGTKLSALVDADFGTCPDTCRSVSGGAVMMAGGAISWFSRVQKVTAAASSESEYPALAEMVNELRFLRQVGEFMTLPIDV-AIKIHEDNEGAIKMAKHRFSSRRTRHVNIKHHIVRDAIE 176
            +A+ T+ D   AVR +   C+   +     A+  LG    T   GI +      G  L    DADF T     RSVSGG V   GGA+SWFSR QK    +++E+EY AL ++V E+ FLRQ   FM   + +  I I EDN+GAI++A++  S+  ++HV+++HH+VR+ +E
Sbjct:  218 LATQTRPDIANAVRTVARYCASPKLVPWNAAMDILGYARRTSQFGISFQRGTVEGLSLQGYADADFATKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQFWRFMLPQVGMPCIPIFEDNQGAIQLAQNPISNSNSKHVDVRHHLVRELVE 390          
BLAST of mRNA_H-elongata_contig182169.4882.1 vs. uniprot
Match: A0A6H5JWA6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWA6_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 2.940e-24
Identity = 60/134 (44.78%), Postives = 87/134 (64.93%), Query Frame = 0
Query:   45 TRDLGIIYGGEPGGGTKLSALVDADFGTCPDTCRSVSGGAVMMAGGAISWFSRVQKVTAAASSESEYPALAEMVNELRFLRQVGEFMTLPIDV--AIKIHEDNEGAIKMAKHRFSSRRTRHVNIKHHIVRDAIE 176
            T  LGI +      G  L A VDAD+ +     RSVSGG VM AGGAI+WFS+ Q     ++++SEY A+A+M  E+ FLRQV  FM LP ++   I ++EDNEGAI++AKH  S   ++H++++HH +R  ++
Sbjct:  584 TSSLGISFQRGTVSGFTLIAFVDADYASRAADRRSVSGGVVMCAGGAIAWFSKTQTCVTLSTTQSEYVAMADMGKEILFLRQVWRFM-LPKELRPCIPLYEDNEGAIQIAKHPISKSNSKHIDVRHHFLRQLVD 716          
BLAST of mRNA_H-elongata_contig182169.4882.1 vs. uniprot
Match: A0A6H5JRZ9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRZ9_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 3.550e-24
Identity = 61/144 (42.36%), Postives = 92/144 (63.89%), Query Frame = 0
Query:   36 ALYYLGCHI-TRDLGIIYGGEPGGGTKLSALVDADFGTCPDTCRSVSGGAVMMAGGAISWFSRVQKVTAAASSESEYPALAEMVNELRFLRQVGEFMTLPIDV--AIKIHEDNEGAIKMAKHRFSSRRTRHVNIKHHIVRDAIE 176
            AL  LG  + T   GI +      G  L   V+AD+ +     RSVSGG VM AGGAI+WFS+ QK    +++++EY A+A+M  E+ FLRQV  FM LP ++   I ++EDNEGAI++AKH  S+  ++H++++HH +R  ++
Sbjct:  255 ALSILGYAVRTSSFGISFQSGTVSGFSLITFVNADYASRAADRRSVSGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILFLRQVWRFM-LPKELRPCIPLYEDNEGAIQIAKHPISNSNSKHIDVRHHFLRQLVD 397          
BLAST of mRNA_H-elongata_contig182169.4882.1 vs. uniprot
Match: A0A6H5K8Q6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Q6_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 3.710e-24
Identity = 65/188 (34.57%), Postives = 106/188 (56.38%), Query Frame = 0
Query:    1 MVFVDDLLVASATKRDEEQAVRDLCSCFPIKDLGEALYYLGCHITR--DLGIIYGGEPGGGTKLSA---------LVDADFGTCPDTCRSVSGGAVMMAGGAISWFSRVQKVTAAASSESEYPALAEMVNELRFLRQVGEFMTLPIDV-AIKIHEDNEGAIKMAKHRFSSRRTRHVNIKHHIVRDAIE 176
            +V V+D+      +R ++    DL    P+K+LGE  +Y GC   R  + G +   +     +L+A           DADF +     RS+SGG V   GG +SWFSR QK    +++E+EY AL ++V E+ FLRQV  FM   + +  I + EDN+GAI+ A++  S+  ++H++++HH +R+ +E
Sbjct:  648 VVHVEDIFAVGEGERCDKFGA-DLNKSVPVKNLGELRWYYGCFYERSKETGRLTISQQTFTDELAAECTGMQRWGYADADFASKAADRRSISGGIVTCGGGVVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQVWRFMFPKVSMPCIPVFEDNQGAIQRAQNPISNSNSKHIDVRHHFLRELVE 834          
BLAST of mRNA_H-elongata_contig182169.4882.1 vs. uniprot
Match: A0A6H5JI51_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI51_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 4.160e-24
Identity = 50/119 (42.02%), Postives = 78/119 (65.55%), Query Frame = 0
Query:   59 GTKLSALVDADFGTCPDTCRSVSGGAVMMAGGAISWFSRVQKVTAAASSESEYPALAEMVNELRFLRQVGEFMTLPIDV-AIKIHEDNEGAIKMAKHRFSSRRTRHVNIKHHIVRDAIE 176
            G  L    DADF +     RSVSGG V   GGA+SWFSR QK    +++E+EY AL ++V E+ FLRQ+  FM   + +  I + EDN+GAI++A++  S+  ++H++++HH +R+ +E
Sbjct:   24 GFSLQVYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQVAQNPISNSNSKHIDVRHHFLRELVE 142          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig182169.4882.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KIJ7_9PHAE3.180e-2640.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTQ9_9PHAE3.370e-2538.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5J6_9PHAE4.340e-2536.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWK8_9PHAE5.450e-2539.77Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JR13_9PHAE1.060e-2440.34Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L8D6_9PHAE1.740e-2438.73Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWA6_9PHAE2.940e-2444.78Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JRZ9_9PHAE3.550e-2442.36Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K8Q6_9PHAE3.710e-2434.57Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JI51_9PHAE4.160e-2442.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 60..174
NoneNo IPR availablePANTHERPTHR11439:SF275coord: 60..174

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig182169contigH-elongata_contig182169:271..807 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig182169.4882.1mRNA_H-elongata_contig182169.4882.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig182169 10..884 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig182169.4882.1 ID=prot_H-elongata_contig182169.4882.1|Name=mRNA_H-elongata_contig182169.4882.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=179bp
MVFVDDLLVASATKRDEEQAVRDLCSCFPIKDLGEALYYLGCHITRDLGI
IYGGEPGGGTKLSALVDADFGTCPDTCRSVSGGAVMMAGGAISWFSRVQK
VTAAASSESEYPALAEMVNELRFLRQVGEFMTLPIDVAIKIHEDNEGAIK
MAKHRFSSRRTRHVNIKHHIVRDAIEGG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR039537Retrotran_Ty1/copia-like