mRNA_H-elongata_contig181962.4877.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig181962.4877.1
Unique NamemRNA_H-elongata_contig181962.4877.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig181962.4877.1 vs. uniprot
Match: D7FME2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FME2_ECTSI)

HSP 1 Score: 192 bits (488), Expect = 1.230e-61
Identity = 96/102 (94.12%), Postives = 100/102 (98.04%), Query Frame = 1
Query:    1 TEEEALTARIIHYFSLGVLQLPEGTTLRAYLAQKLDCDPMRITKKFTGTNCLGKRVYHSCERTTATYEVAKQAVEELAELEARFRNRLERNKEKRTGIMDIE 306
            +EEEALTARIIHYFSLGVLQLP+GTTLRAYLAQKLDCDPMRITKKFTGTNCLGKRVYHSCERTTATYEVAKQAVEELAELEARF+ RLERNKEKRTGI+ IE
Sbjct:   15 SEEEALTARIIHYFSLGVLQLPDGTTLRAYLAQKLDCDPMRITKKFTGTNCLGKRVYHSCERTTATYEVAKQAVEELAELEARFQARLERNKEKRTGILGIE 116          
BLAST of mRNA_H-elongata_contig181962.4877.1 vs. uniprot
Match: A0A6H5L1T7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1T7_9PHAE)

HSP 1 Score: 192 bits (489), Expect = 7.420e-55
Identity = 96/103 (93.20%), Postives = 100/103 (97.09%), Query Frame = 1
Query:    1 TEEEALTARIIHYFSLGVLQLPEGTTLRAYLAQKLDCDPMRITKKFTGTNCLGKRVYHSCERTTATYEVAKQAVEELAELEARFRNRLERNKEKRTGIMDIEV 309
            +EEEALTARIIHYFSLGVLQLP+GTTLRAYLAQKLDCDPMRITKKFTGTNCLGKRVYHSCERTTATYEVAKQAVEELAELEARF+ RLERNKEKRTGI+ IE 
Sbjct:   15 SEEEALTARIIHYFSLGVLQLPDGTTLRAYLAQKLDCDPMRITKKFTGTNCLGKRVYHSCERTTATYEVAKQAVEELAELEARFQARLERNKEKRTGILGIEA 117          
BLAST of mRNA_H-elongata_contig181962.4877.1 vs. uniprot
Match: A0A836CQN8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CQN8_9STRA)

HSP 1 Score: 136 bits (342), Expect = 2.180e-39
Identity = 66/97 (68.04%), Postives = 80/97 (82.47%), Query Frame = 1
Query:    4 EEEALTARIIHYFSLGVLQLPEGTTLRAYLAQKLDCDPMRITKKFTGTNCLGKRVYHSCERTTATYEVAKQAVEELAELEARFRNRLERNKEKRTGI 294
            EEEA TARIIHYF+ GVLQLPEGTTLR +LA+KL CDPMRITKKFTG+ CLGKRVYHSCERT AT    +++ E+LA LE RF ++LER +++R  +
Sbjct:   25 EEEAYTARIIHYFNTGVLQLPEGTTLRVFLAEKLRCDPMRITKKFTGSACLGKRVYHSCERTPATKAEIQESKEDLANLEQRFLSQLERRRDRRASL 121          
BLAST of mRNA_H-elongata_contig181962.4877.1 vs. uniprot
Match: A0A835Z4F5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4F5_9STRA)

HSP 1 Score: 130 bits (326), Expect = 2.640e-37
Identity = 62/84 (73.81%), Postives = 73/84 (86.90%), Query Frame = 1
Query:    1 TEEEALTARIIHYFSLGVLQLPEGTTLRAYLAQKLDCDPMRITKKFTGTNCLGKRVYHSCERTTATYEVAKQAVEELAELEARF 252
            +EEEA T RIIHYF+ GVLQLPEGTTLRAYLA+KL CDPMRITKKFTG++CLGKRVYHSCERT A+ +    + E+L++LEARF
Sbjct:    8 SEEEAYTERIIHYFNTGVLQLPEGTTLRAYLAKKLQCDPMRITKKFTGSSCLGKRVYHSCERTPASPDEITASKEDLSQLEARF 91          
BLAST of mRNA_H-elongata_contig181962.4877.1 vs. uniprot
Match: A0A6V1Q146_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1Q146_HETAK)

HSP 1 Score: 131 bits (329), Expect = 4.470e-35
Identity = 63/102 (61.76%), Postives = 79/102 (77.45%), Query Frame = 1
Query:    4 EEEALTARIIHYFSLGVLQLPEGTTLRAYLAQKLDCDPMRITKKFTGTNCLGKRVYHSCERTTATYEVAKQAVEELAELEARFRNRLERNKEKRTGIMDIEV 309
            EEE  T++IIHYF+ G+LQLPEGTTLR+YLA+KL+CDPMRITKKFTG+ CLGKRVYH  +   AT+    QA++EL+ LE RF+ RLER K+K    +D E 
Sbjct:  105 EEEEFTSKIIHYFNTGILQLPEGTTLRSYLAEKLNCDPMRITKKFTGSQCLGKRVYHQGDVVQATHAQVVQALDELSHLERRFKLRLEREKQKTRSDLDAET 206          
BLAST of mRNA_H-elongata_contig181962.4877.1 vs. uniprot
Match: A0A7S1UUW2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UUW2_9STRA)

HSP 1 Score: 120 bits (300), Expect = 1.090e-29
Identity = 59/88 (67.05%), Postives = 69/88 (78.41%), Query Frame = 1
Query:    4 EEEALTARIIHYFSLGVLQLPEGTTLRAYLAQKLDCDPMRITKKFTGTNCLGKRVYHSCERTTATYEVAKQAVEELAELEARFRNRLE 267
            EEE  T+RIIH+FS GVL LPEGTTLR+YLA+KL+CDPMRITKKF G +CLGKRVYH C+R+  T    + A  ELA LE RFR R+E
Sbjct:  207 EEEEYTSRIIHHFSTGVLTLPEGTTLRSYLAEKLNCDPMRITKKFAGASCLGKRVYHLCDRSPGTAADIEMAKAELARLEQRFRLRVE 294          
BLAST of mRNA_H-elongata_contig181962.4877.1 vs. uniprot
Match: A0A7S1BZD1_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BZD1_9STRA)

HSP 1 Score: 114 bits (286), Expect = 1.670e-27
Identity = 55/88 (62.50%), Postives = 68/88 (77.27%), Query Frame = 1
Query:    4 EEEALTARIIHYFSLGVLQLPEGTTLRAYLAQKLDCDPMRITKKFTGTNCLGKRVYHSCERTTATYEVAKQAVEELAELEARFRNRLE 267
            EEE  T+RIIHYFS G+L LPEGTTLR+YL++ L CDPMRITKKF G +CLGKRVY  C+R+ AT    + A +ELA LE RFR +++
Sbjct:  223 EEEEFTSRIIHYFSTGLLTLPEGTTLRSYLSETLSCDPMRITKKFAGASCLGKRVYRLCDRSKATANDNEMAKKELAHLEQRFRAKVQ 310          
BLAST of mRNA_H-elongata_contig181962.4877.1 vs. uniprot
Match: A0A7S1XJQ1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XJQ1_9STRA)

HSP 1 Score: 111 bits (277), Expect = 3.100e-27
Identity = 52/94 (55.32%), Postives = 73/94 (77.66%), Query Frame = 1
Query:    4 EEEALTARIIHYFSLGVLQLPEGTTLRAYLAQKLDCDPMRITKKFTGTNCLGKRVYHSCERTTATYEVAKQAVEELAELEARFRNRLERNKEKR 285
            EEEA T R+IH F+ G+LQ+  GTTLR+YL++KL+CDPMRITKK+ G++C+GKR++  CERT    E  +Q+ +ELA+LEA FR +LE ++  R
Sbjct:   34 EEEAYTERVIHDFNEGLLQVAAGTTLRSYLSEKLNCDPMRITKKYAGSSCIGKRIFAPCERTPENIERGRQSAKELADLEAAFRAKLESSRSSR 127          
BLAST of mRNA_H-elongata_contig181962.4877.1 vs. uniprot
Match: A0A7S1ZRG3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZRG3_9STRA)

HSP 1 Score: 109 bits (272), Expect = 7.490e-26
Identity = 53/87 (60.92%), Postives = 65/87 (74.71%), Query Frame = 1
Query:    4 EEEALTARIIHYFSLGVLQLPEGTTLRAYLAQKLDCDPMRITKKFTGTNCLGKRVYHSCERTTATYEVAKQAVEELAELEARFRNRL 264
            EEE  T++IIHYFS G+L LPEGTTLR++LA KL+CDPMRITKK+ G  CLGKR YH CER   T    ++A  EL +LE RF+ R+
Sbjct:  373 EEEEYTSKIIHYFSRGLLTLPEGTTLRSFLADKLNCDPMRITKKYAGAACLGKRAYHLCERPQVTIADIERANAELRQLEHRFQLRV 459          
BLAST of mRNA_H-elongata_contig181962.4877.1 vs. uniprot
Match: A0A1E7EJF2_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EJF2_9STRA)

HSP 1 Score: 105 bits (263), Expect = 1.500e-24
Identity = 53/88 (60.23%), Postives = 64/88 (72.73%), Query Frame = 1
Query:    4 EEEALTARIIHYFSLGVLQLPEGTTLRAYLAQKLDCDPMRITKKFTGTNCLGKRVYHSCERTTATYEVAKQAVEELAELEARFRNRLE 267
            EEE  T+RII YFS G+L LP+G TLR+YLA KL+CDPMRITKKFTG  CLG+R YH  +R  A++   + A  EL  LE RFR R+E
Sbjct:   64 EEEEYTSRIIQYFSTGLLTLPDGATLRSYLADKLNCDPMRITKKFTGACCLGRRAYHLRDRPRASFAEVEMANLELLHLERRFRLRVE 151          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig181962.4877.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FME2_ECTSI1.230e-6194.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L1T7_9PHAE7.420e-5593.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CQN8_9STRA2.180e-3968.04Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835Z4F5_9STRA2.640e-3773.81Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A6V1Q146_HETAK4.470e-3561.76Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S1UUW2_9STRA1.090e-2967.05Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
A0A7S1BZD1_9STRA1.670e-2762.50Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S1XJQ1_9STRA3.100e-2755.32Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S1ZRG3_9STRA7.490e-2660.92Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A1E7EJF2_9STRA1.500e-2460.23Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig181962contigH-elongata_contig181962:18..329 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score194.1
Seed ortholog evalue3.2e-47
Seed eggNOG ortholog2880.D7FME2
EggNOG OGs2DZRM@1,2S78E@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-05_001090.1
Exons1
Model size312
Cds size312
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930048.338623-CDS-H-elongata_contig181962:17..3291622930048.338623-CDS-H-elongata_contig181962:17..329Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig181962 18..329 +
1691679260.693751-CDS-H-elongata_contig181962:17..3291691679260.693751-CDS-H-elongata_contig181962:17..329Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig181962 18..329 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig181962.4877.1prot_H-elongata_contig181962.4877.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig181962 18..329 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig181962.4877.1

>prot_H-elongata_contig181962.4877.1 ID=prot_H-elongata_contig181962.4877.1|Name=mRNA_H-elongata_contig181962.4877.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=104bp
TEEEALTARIIHYFSLGVLQLPEGTTLRAYLAQKLDCDPMRITKKFTGTN
CLGKRVYHSCERTTATYEVAKQAVEELAELEARFRNRLERNKEKRTGIMD
IEV*
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mRNA from alignment at H-elongata_contig181962:18..329+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig181962.4877.1 ID=mRNA_H-elongata_contig181962.4877.1|Name=mRNA_H-elongata_contig181962.4877.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=312bp|location=Sequence derived from alignment at H-elongata_contig181962:18..329+ (Himanthalia elongata Himel1 dioecious)
ACGGAAGAGGAGGCTCTGACAGCAAGAATAATACACTACTTTAGCCTGGG AGTGTTGCAGTTGCCGGAGGGGACGACGCTACGGGCGTACCTCGCGCAGA AGCTCGACTGCGACCCCATGCGTATCACAAAAAAGTTCACGGGCACGAAC TGCCTTGGGAAACGCGTTTACCACTCGTGCGAGAGAACTACGGCAACGTA TGAGGTCGCAAAGCAAGCGGTCGAAGAGCTGGCAGAACTGGAAGCAAGGT TTCGAAATCGTTTGGAGCGCAACAAGGAGAAGCGGACGGGCATCATGGAT ATCGAGGTATGA
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Coding sequence (CDS) from alignment at H-elongata_contig181962:18..329+

>mRNA_H-elongata_contig181962.4877.1 ID=mRNA_H-elongata_contig181962.4877.1|Name=mRNA_H-elongata_contig181962.4877.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=624bp|location=Sequence derived from alignment at H-elongata_contig181962:18..329+ (Himanthalia elongata Himel1 dioecious)
ACGGAAGAGGAGGCTCTGACAGCAAGAATAATACACTACTTTAGCCTGGG
AGTGTTGCAGTTGCCGGAGGGGACGACGCTACGGGCGTACCTCGCGCAGA
AGCTCGACTGCGACCCCATGCGTATCACAAAAAAGTTCACGGGCACGAAC
TGCCTTGGGAAACGCGTTTACCACTCGTGCGAGAGAACTACGGCAACGTA
TGAGGTCGCAAAGCAAGCGGTCGAAGAGCTGGCAGAACTGGAAGCAAGGT
TTCGAAATCGTTTGGAGCGCAACAAGGAGAAGCGGACGGGCATCATGGAT
ATCGAGGTATGAACGGAAGAGGAGGCTCTGACAGCAAGAATAATACACTA
CTTTAGCCTGGGAGTGTTGCAGTTGCCGGAGGGGACGACGCTACGGGCGT
ACCTCGCGCAGAAGCTCGACTGCGACCCCATGCGTATCACAAAAAAGTTC
ACGGGCACGAACTGCCTTGGGAAACGCGTTTACCACTCGTGCGAGAGAAC
TACGGCAACGTATGAGGTCGCAAAGCAAGCGGTCGAAGAGCTGGCAGAAC
TGGAAGCAAGGTTTCGAAATCGTTTGGAGCGCAACAAGGAGAAGCGGACG
GGCATCATGGATATCGAGGTATGA
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