mRNA_H-elongata_contig181962.4877.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig181962.4877.1 vs. uniprot
Match: D7FME2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FME2_ECTSI) HSP 1 Score: 192 bits (488), Expect = 1.230e-61 Identity = 96/102 (94.12%), Postives = 100/102 (98.04%), Query Frame = 1
Query: 1 TEEEALTARIIHYFSLGVLQLPEGTTLRAYLAQKLDCDPMRITKKFTGTNCLGKRVYHSCERTTATYEVAKQAVEELAELEARFRNRLERNKEKRTGIMDIE 306
+EEEALTARIIHYFSLGVLQLP+GTTLRAYLAQKLDCDPMRITKKFTGTNCLGKRVYHSCERTTATYEVAKQAVEELAELEARF+ RLERNKEKRTGI+ IE
Sbjct: 15 SEEEALTARIIHYFSLGVLQLPDGTTLRAYLAQKLDCDPMRITKKFTGTNCLGKRVYHSCERTTATYEVAKQAVEELAELEARFQARLERNKEKRTGILGIE 116
BLAST of mRNA_H-elongata_contig181962.4877.1 vs. uniprot
Match: A0A6H5L1T7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1T7_9PHAE) HSP 1 Score: 192 bits (489), Expect = 7.420e-55 Identity = 96/103 (93.20%), Postives = 100/103 (97.09%), Query Frame = 1
Query: 1 TEEEALTARIIHYFSLGVLQLPEGTTLRAYLAQKLDCDPMRITKKFTGTNCLGKRVYHSCERTTATYEVAKQAVEELAELEARFRNRLERNKEKRTGIMDIEV 309
+EEEALTARIIHYFSLGVLQLP+GTTLRAYLAQKLDCDPMRITKKFTGTNCLGKRVYHSCERTTATYEVAKQAVEELAELEARF+ RLERNKEKRTGI+ IE
Sbjct: 15 SEEEALTARIIHYFSLGVLQLPDGTTLRAYLAQKLDCDPMRITKKFTGTNCLGKRVYHSCERTTATYEVAKQAVEELAELEARFQARLERNKEKRTGILGIEA 117
BLAST of mRNA_H-elongata_contig181962.4877.1 vs. uniprot
Match: A0A836CQN8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CQN8_9STRA) HSP 1 Score: 136 bits (342), Expect = 2.180e-39 Identity = 66/97 (68.04%), Postives = 80/97 (82.47%), Query Frame = 1
Query: 4 EEEALTARIIHYFSLGVLQLPEGTTLRAYLAQKLDCDPMRITKKFTGTNCLGKRVYHSCERTTATYEVAKQAVEELAELEARFRNRLERNKEKRTGI 294
EEEA TARIIHYF+ GVLQLPEGTTLR +LA+KL CDPMRITKKFTG+ CLGKRVYHSCERT AT +++ E+LA LE RF ++LER +++R +
Sbjct: 25 EEEAYTARIIHYFNTGVLQLPEGTTLRVFLAEKLRCDPMRITKKFTGSACLGKRVYHSCERTPATKAEIQESKEDLANLEQRFLSQLERRRDRRASL 121
BLAST of mRNA_H-elongata_contig181962.4877.1 vs. uniprot
Match: A0A835Z4F5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4F5_9STRA) HSP 1 Score: 130 bits (326), Expect = 2.640e-37 Identity = 62/84 (73.81%), Postives = 73/84 (86.90%), Query Frame = 1
Query: 1 TEEEALTARIIHYFSLGVLQLPEGTTLRAYLAQKLDCDPMRITKKFTGTNCLGKRVYHSCERTTATYEVAKQAVEELAELEARF 252
+EEEA T RIIHYF+ GVLQLPEGTTLRAYLA+KL CDPMRITKKFTG++CLGKRVYHSCERT A+ + + E+L++LEARF
Sbjct: 8 SEEEAYTERIIHYFNTGVLQLPEGTTLRAYLAKKLQCDPMRITKKFTGSSCLGKRVYHSCERTPASPDEITASKEDLSQLEARF 91
BLAST of mRNA_H-elongata_contig181962.4877.1 vs. uniprot
Match: A0A6V1Q146_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1Q146_HETAK) HSP 1 Score: 131 bits (329), Expect = 4.470e-35 Identity = 63/102 (61.76%), Postives = 79/102 (77.45%), Query Frame = 1
Query: 4 EEEALTARIIHYFSLGVLQLPEGTTLRAYLAQKLDCDPMRITKKFTGTNCLGKRVYHSCERTTATYEVAKQAVEELAELEARFRNRLERNKEKRTGIMDIEV 309
EEE T++IIHYF+ G+LQLPEGTTLR+YLA+KL+CDPMRITKKFTG+ CLGKRVYH + AT+ QA++EL+ LE RF+ RLER K+K +D E
Sbjct: 105 EEEEFTSKIIHYFNTGILQLPEGTTLRSYLAEKLNCDPMRITKKFTGSQCLGKRVYHQGDVVQATHAQVVQALDELSHLERRFKLRLEREKQKTRSDLDAET 206
BLAST of mRNA_H-elongata_contig181962.4877.1 vs. uniprot
Match: A0A7S1UUW2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UUW2_9STRA) HSP 1 Score: 120 bits (300), Expect = 1.090e-29 Identity = 59/88 (67.05%), Postives = 69/88 (78.41%), Query Frame = 1
Query: 4 EEEALTARIIHYFSLGVLQLPEGTTLRAYLAQKLDCDPMRITKKFTGTNCLGKRVYHSCERTTATYEVAKQAVEELAELEARFRNRLE 267
EEE T+RIIH+FS GVL LPEGTTLR+YLA+KL+CDPMRITKKF G +CLGKRVYH C+R+ T + A ELA LE RFR R+E
Sbjct: 207 EEEEYTSRIIHHFSTGVLTLPEGTTLRSYLAEKLNCDPMRITKKFAGASCLGKRVYHLCDRSPGTAADIEMAKAELARLEQRFRLRVE 294
BLAST of mRNA_H-elongata_contig181962.4877.1 vs. uniprot
Match: A0A7S1BZD1_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BZD1_9STRA) HSP 1 Score: 114 bits (286), Expect = 1.670e-27 Identity = 55/88 (62.50%), Postives = 68/88 (77.27%), Query Frame = 1
Query: 4 EEEALTARIIHYFSLGVLQLPEGTTLRAYLAQKLDCDPMRITKKFTGTNCLGKRVYHSCERTTATYEVAKQAVEELAELEARFRNRLE 267
EEE T+RIIHYFS G+L LPEGTTLR+YL++ L CDPMRITKKF G +CLGKRVY C+R+ AT + A +ELA LE RFR +++
Sbjct: 223 EEEEFTSRIIHYFSTGLLTLPEGTTLRSYLSETLSCDPMRITKKFAGASCLGKRVYRLCDRSKATANDNEMAKKELAHLEQRFRAKVQ 310
BLAST of mRNA_H-elongata_contig181962.4877.1 vs. uniprot
Match: A0A7S1XJQ1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XJQ1_9STRA) HSP 1 Score: 111 bits (277), Expect = 3.100e-27 Identity = 52/94 (55.32%), Postives = 73/94 (77.66%), Query Frame = 1
Query: 4 EEEALTARIIHYFSLGVLQLPEGTTLRAYLAQKLDCDPMRITKKFTGTNCLGKRVYHSCERTTATYEVAKQAVEELAELEARFRNRLERNKEKR 285
EEEA T R+IH F+ G+LQ+ GTTLR+YL++KL+CDPMRITKK+ G++C+GKR++ CERT E +Q+ +ELA+LEA FR +LE ++ R
Sbjct: 34 EEEAYTERVIHDFNEGLLQVAAGTTLRSYLSEKLNCDPMRITKKYAGSSCIGKRIFAPCERTPENIERGRQSAKELADLEAAFRAKLESSRSSR 127
BLAST of mRNA_H-elongata_contig181962.4877.1 vs. uniprot
Match: A0A7S1ZRG3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZRG3_9STRA) HSP 1 Score: 109 bits (272), Expect = 7.490e-26 Identity = 53/87 (60.92%), Postives = 65/87 (74.71%), Query Frame = 1
Query: 4 EEEALTARIIHYFSLGVLQLPEGTTLRAYLAQKLDCDPMRITKKFTGTNCLGKRVYHSCERTTATYEVAKQAVEELAELEARFRNRL 264
EEE T++IIHYFS G+L LPEGTTLR++LA KL+CDPMRITKK+ G CLGKR YH CER T ++A EL +LE RF+ R+
Sbjct: 373 EEEEYTSKIIHYFSRGLLTLPEGTTLRSFLADKLNCDPMRITKKYAGAACLGKRAYHLCERPQVTIADIERANAELRQLEHRFQLRV 459
BLAST of mRNA_H-elongata_contig181962.4877.1 vs. uniprot
Match: A0A1E7EJF2_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EJF2_9STRA) HSP 1 Score: 105 bits (263), Expect = 1.500e-24 Identity = 53/88 (60.23%), Postives = 64/88 (72.73%), Query Frame = 1
Query: 4 EEEALTARIIHYFSLGVLQLPEGTTLRAYLAQKLDCDPMRITKKFTGTNCLGKRVYHSCERTTATYEVAKQAVEELAELEARFRNRLE 267
EEE T+RII YFS G+L LP+G TLR+YLA KL+CDPMRITKKFTG CLG+R YH +R A++ + A EL LE RFR R+E
Sbjct: 64 EEEEYTSRIIQYFSTGLLTLPDGATLRSYLADKLNCDPMRITKKFTGACCLGRRAYHLRDRPRASFAEVEMANLELLHLERRFRLRVE 151 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig181962.4877.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig181962.4877.1 >prot_H-elongata_contig181962.4877.1 ID=prot_H-elongata_contig181962.4877.1|Name=mRNA_H-elongata_contig181962.4877.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=104bp TEEEALTARIIHYFSLGVLQLPEGTTLRAYLAQKLDCDPMRITKKFTGTNback to top mRNA from alignment at H-elongata_contig181962:18..329+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig181962.4877.1 ID=mRNA_H-elongata_contig181962.4877.1|Name=mRNA_H-elongata_contig181962.4877.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=312bp|location=Sequence derived from alignment at H-elongata_contig181962:18..329+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig181962:18..329+ >mRNA_H-elongata_contig181962.4877.1 ID=mRNA_H-elongata_contig181962.4877.1|Name=mRNA_H-elongata_contig181962.4877.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=624bp|location=Sequence derived from alignment at H-elongata_contig181962:18..329+ (Himanthalia elongata Himel1 dioecious)back to top |