mRNA_H-elongata_contig181862.4871.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig181862.4871.1
Unique NamemRNA_H-elongata_contig181862.4871.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig181862.4871.1 vs. uniprot
Match: D7FSC2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSC2_ECTSI)

HSP 1 Score: 133 bits (335), Expect = 2.350e-34
Identity = 62/92 (67.39%), Postives = 77/92 (83.70%), Query Frame = 1
Query:    4 RDPIAVALAKQVLSAARDDPESLKDLLAEDVQIYAPVIGPLKKKDFMQSVTVDFADFFAGLDVDNNWYDARVNPFEPSRVWVTTRTTAKVVG 279
            RD +A+ALAKQVL+A RDD  +L DLLA+D  IYAP++GPLKKK+ +QS TVD  DFF+GLD D+N++DARV+PFEPSRVW+TT  T KVVG
Sbjct:  209 RDSVAIALAKQVLTALRDDTGALADLLADDCMIYAPILGPLKKKEIVQSATVDLVDFFSGLDTDDNYHDARVDPFEPSRVWITTIPTTKVVG 300          
BLAST of mRNA_H-elongata_contig181862.4871.1 vs. uniprot
Match: A0A830HS91_9CHLO (Uncharacterized protein n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HS91_9CHLO)

HSP 1 Score: 65.9 bits (159), Expect = 7.900e-11
Identity = 42/91 (46.15%), Postives = 56/91 (61.54%), Query Frame = 1
Query:   28 AKQVLSAAR--DDPESLKDLLAEDVQIYAPVIGPLKKKDFMQSVTVDFADFF---AGLDVDNNWYDARVNPFEPSRVWVTTRTTAKVVGTI 285
            AK+VL+A    DDP    DLLA+D +  APV+GPL KK+F  +    FA F    A  D++ N+++  V+PFEP RVW  TR TA   GT+
Sbjct:   76 AKKVLAANNGCDDP----DLLADDFKFVAPVVGPLSKKEFTNA----FASFKIDDAFPDINANFHNFWVDPFEPGRVWYVTRATATHTGTL 158          
BLAST of mRNA_H-elongata_contig181862.4871.1 vs. uniprot
Match: A0A813K376_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813K376_POLGL)

HSP 1 Score: 63.2 bits (152), Expect = 1.220e-9
Identity = 38/93 (40.86%), Postives = 54/93 (58.06%), Query Frame = 1
Query:   19 VALAKQVLSAAR----DDPESLKDLLAEDVQIYAPVIGPLKKKDFMQSVTVDFADFFAGL-DVDNNWYDARVNPFEPSRVWVTTRTTAKVVGT 282
            +A A+ +L+A R    D   S  +LLAED +   PV+GPL KK ++ +V     DF +G  D +  W+  RV+PF+PSRVW+T R      GT
Sbjct:  113 IAPAELILAAKRFLAYDGGVSAPELLAEDFKFVGPVVGPLAKKPYLSAV--GGFDFESGFPDANPEWHHFRVDPFDPSRVWMTARGRGTNTGT 203          
BLAST of mRNA_H-elongata_contig181862.4871.1 vs. uniprot
Match: A0A813E6G2_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813E6G2_POLGL)

HSP 1 Score: 62.0 bits (149), Expect = 2.510e-9
Identity = 34/81 (41.98%), Postives = 49/81 (60.49%), Query Frame = 1
Query:   19 VALAKQVLSAARDDPESLKDLLAEDVQIYAPVIGPLKKKDFMQSVT-VDFADFFAGLDVDNNWYDARVNPFEPSRVWVTTR 258
            VA AK++L+     P  +  L+AED +   PV+GPL KK ++ ++   D   FF   D +   YD RV+PFEP+RVW T+R
Sbjct:   87 VARAKRILALNIGFPGEVGGLMAEDFEFAGPVVGPLSKKAYLDAIKGFDLLKFFP--DSNFEMYDFRVDPFEPNRVWFTSR 165          
BLAST of mRNA_H-elongata_contig181862.4871.1 vs. uniprot
Match: A0A813IUL9_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813IUL9_POLGL)

HSP 1 Score: 62.0 bits (149), Expect = 3.770e-9
Identity = 34/81 (41.98%), Postives = 49/81 (60.49%), Query Frame = 1
Query:   19 VALAKQVLSAARDDPESLKDLLAEDVQIYAPVIGPLKKKDFMQSVT-VDFADFFAGLDVDNNWYDARVNPFEPSRVWVTTR 258
            VA AK++L+     P  +  L+AED +   PV+GPL KK ++ ++   D   FF   D +   YD RV+PFEP+RVW T+R
Sbjct:   78 VARAKRILALNIGFPGEVGGLMAEDFEFAGPVVGPLSKKAYLDAIKGFDLLKFFP--DSNFEMYDFRVDPFEPNRVWFTSR 156          
BLAST of mRNA_H-elongata_contig181862.4871.1 vs. uniprot
Match: A0A7S2F2T3_9CHLO (Hypothetical protein n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A7S2F2T3_9CHLO)

HSP 1 Score: 60.1 bits (144), Expect = 5.400e-9
Identity = 31/72 (43.06%), Postives = 45/72 (62.50%), Query Frame = 1
Query:   70 LKDLLAEDVQIYAPVIGPLKKKDFMQSV-TVDFADFFAGLDVDNNWYDARVNPFEPSRVWVTTRTTAKVVGT 282
            + D LA D Q   PV+GPL K++F++++ T D    F   D+ +N+Y  RV+PFEP RVW T+R   +  GT
Sbjct:   27 MADDLALDFQFVGPVVGPLAKEEFLKAIGTFDVTTGFP--DMQSNYYHFRVDPFEPDRVWFTSRPVGRHTGT 96          
BLAST of mRNA_H-elongata_contig181862.4871.1 vs. uniprot
Match: A0A830HCK4_9CHLO (Rhodanese domain-containing protein n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HCK4_9CHLO)

HSP 1 Score: 60.1 bits (144), Expect = 1.870e-8
Identity = 31/72 (43.06%), Postives = 45/72 (62.50%), Query Frame = 1
Query:   70 LKDLLAEDVQIYAPVIGPLKKKDFMQSV-TVDFADFFAGLDVDNNWYDARVNPFEPSRVWVTTRTTAKVVGT 282
            + D LA D Q   PV+GPL K++F++++ T D    F   D+ +N+Y  RV+PFEP RVW T+R   +  GT
Sbjct:  709 MADDLALDFQFVGPVVGPLAKEEFLKAIGTFDVTTGFP--DMQSNYYHFRVDPFEPDRVWFTSRPVGRHTGT 778          
BLAST of mRNA_H-elongata_contig181862.4871.1 vs. uniprot
Match: A0A7S1I8N6_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1I8N6_9EUGL)

HSP 1 Score: 59.7 bits (143), Expect = 1.950e-8
Identity = 33/87 (37.93%), Postives = 54/87 (62.07%), Query Frame = 1
Query:   19 VALAKQVLSAARDDPESLKDLLAEDVQIYAPVIGPLKKKDFMQSVTVDFADFFAGLDVDNNWYDARVNPFEPSRVWVTTRTTAKVVG 279
            +A  K++L  A +  E  +DLLA+D Q  AP++GPLK+++F++++   F    A  D+  N +   V+P EP+RVW  TR+T +  G
Sbjct:  109 IATVKKIL--ALEFKEGTEDLLADDFQFVAPIVGPLKREEFLKAIN-QFDIKTAFPDLAANMWGFHVDPMEPNRVWYFTRSTGEHRG 192          
BLAST of mRNA_H-elongata_contig181862.4871.1 vs. uniprot
Match: A0A813E2Q1_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813E2Q1_POLGL)

HSP 1 Score: 59.3 bits (142), Expect = 2.400e-8
Identity = 35/88 (39.77%), Postives = 50/88 (56.82%), Query Frame = 1
Query:   19 VALAKQVLSAARDDPESLKDLLAEDVQIYAPVIGPLKKKDFMQSV-TVDFADFFAGLDVDNNWYDARVNPFEPSRVWVTTRTTAKVVG 279
            VA +K++L+     P     L+AED +   PV+GPL K+ ++ S+ +  F  FF   D     YD RV+PFEP+RVW T+R T    G
Sbjct:   57 VARSKRILALNIGFPGEEGGLMAEDFEFAGPVVGPLSKQAYLGSIKSFGFNTFFP--DAVFEMYDFRVDPFEPNRVWFTSRGTGTQTG 142          
BLAST of mRNA_H-elongata_contig181862.4871.1 vs. uniprot
Match: A0A7S4GNJ9_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4GNJ9_9EUGL)

HSP 1 Score: 58.2 bits (139), Expect = 6.670e-8
Identity = 29/71 (40.85%), Postives = 46/71 (64.79%), Query Frame = 1
Query:   73 KDLLAEDVQIYAPVIGPLKKKDFMQSVTVDFADFFAGL-DVDNNWYDARVNPFEPSRVWVTTRTTAKVVGT 282
            KD++++D Q  APV+GPL++ +F+ ++  D AD  AG  D++ N++   V+P EP+RVW   RT     GT
Sbjct:  114 KDMVSDDFQFVAPVVGPLERHEFLAAM--DSADLDAGFPDLNPNYWGFHVDPMEPNRVWFFNRTRGTHTGT 182          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig181862.4871.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D7FSC2_ECTSI2.350e-3467.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A830HS91_9CHLO7.900e-1146.15Uncharacterized protein n=1 Tax=Pycnococcus provas... [more]
A0A813K376_POLGL1.220e-940.86Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A813E6G2_POLGL2.510e-941.98Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A813IUL9_POLGL3.770e-941.98Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A7S2F2T3_9CHLO5.400e-943.06Hypothetical protein n=1 Tax=Pycnococcus provasoli... [more]
A0A830HCK4_9CHLO1.870e-843.06Rhodanese domain-containing protein n=1 Tax=Pycnoc... [more]
A0A7S1I8N6_9EUGL1.950e-837.93Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A813E2Q1_POLGL2.400e-839.77Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A7S4GNJ9_9EUGL6.670e-840.85Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig181862contigH-elongata_contig181862:151..435 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score133.7
Seed ortholog evalue4.7e-29
Seed eggNOG ortholog2880.D7FSC2
EggNOG OGs2AHTF@1,2S69N@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-20_004970.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size285
Cds size285
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930047.7452776-CDS-H-elongata_contig181862:150..4351622930047.7452776-CDS-H-elongata_contig181862:150..435Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig181862 151..435 -
1691679260.4502764-CDS-H-elongata_contig181862:150..4351691679260.4502764-CDS-H-elongata_contig181862:150..435Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig181862 151..435 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig181862.4871.1prot_H-elongata_contig181862.4871.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig181862 151..435 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig181862.4871.1

>prot_H-elongata_contig181862.4871.1 ID=prot_H-elongata_contig181862.4871.1|Name=mRNA_H-elongata_contig181862.4871.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=95bp
LRDPIAVALAKQVLSAARDDPESLKDLLAEDVQIYAPVIGPLKKKDFMQS
VTVDFADFFAGLDVDNNWYDARVNPFEPSRVWVTTRTTAKVVGTI
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mRNA from alignment at H-elongata_contig181862:151..435-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig181862.4871.1 ID=mRNA_H-elongata_contig181862.4871.1|Name=mRNA_H-elongata_contig181862.4871.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=285bp|location=Sequence derived from alignment at H-elongata_contig181862:151..435- (Himanthalia elongata Himel1 dioecious)
CTCCGTGACCCCATTGCCGTTGCTCTAGCAAAACAGGTACTCAGCGCGGC GAGGGACGATCCGGAGTCGCTAAAGGATCTCCTGGCAGAAGACGTGCAGA TCTACGCTCCCGTAATCGGCCCGCTCAAGAAGAAGGACTTCATGCAGAGC GTGACGGTTGACTTCGCCGACTTCTTCGCGGGACTGGACGTAGACAACAA CTGGTACGACGCTAGGGTGAATCCCTTCGAGCCCTCGAGGGTGTGGGTTA CCACTCGGACCACCGCAAAGGTCGTGGGGACCATC
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Coding sequence (CDS) from alignment at H-elongata_contig181862:151..435-

>mRNA_H-elongata_contig181862.4871.1 ID=mRNA_H-elongata_contig181862.4871.1|Name=mRNA_H-elongata_contig181862.4871.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=570bp|location=Sequence derived from alignment at H-elongata_contig181862:151..435- (Himanthalia elongata Himel1 dioecious)
CTCCGTGACCCCATTGCCGTTGCTCTAGCAAAACAGGTACTCAGCGCGGC
GAGGGACGATCCGGAGTCGCTAAAGGATCTCCTGGCAGAAGACGTGCAGA
TCTACGCTCCCGTAATCGGCCCGCTCAAGAAGAAGGACTTCATGCAGAGC
GTGACGGTTGACTTCGCCGACTTCTTCGCGGGACTGGACGTAGACAACAA
CTGGTACGACGCTAGGGTGAATCCCTTCGAGCCCTCGAGGGTGTGGGTTA
CCACTCGGACCACCGCAAAGGTCGTGGGGACCATCCTCCGTGACCCCATT
GCCGTTGCTCTAGCAAAACAGGTACTCAGCGCGGCGAGGGACGATCCGGA
GTCGCTAAAGGATCTCCTGGCAGAAGACGTGCAGATCTACGCTCCCGTAA
TCGGCCCGCTCAAGAAGAAGGACTTCATGCAGAGCGTGACGGTTGACTTC
GCCGACTTCTTCGCGGGACTGGACGTAGACAACAACTGGTACGACGCTAG
GGTGAATCCCTTCGAGCCCTCGAGGGTGTGGGTTACCACTCGGACCACCG
CAAAGGTCGTGGGGACCATC
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