mRNA_H-elongata_contig181862.4871.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig181862.4871.1 vs. uniprot
Match: D7FSC2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSC2_ECTSI) HSP 1 Score: 133 bits (335), Expect = 2.350e-34 Identity = 62/92 (67.39%), Postives = 77/92 (83.70%), Query Frame = 1
Query: 4 RDPIAVALAKQVLSAARDDPESLKDLLAEDVQIYAPVIGPLKKKDFMQSVTVDFADFFAGLDVDNNWYDARVNPFEPSRVWVTTRTTAKVVG 279
RD +A+ALAKQVL+A RDD +L DLLA+D IYAP++GPLKKK+ +QS TVD DFF+GLD D+N++DARV+PFEPSRVW+TT T KVVG
Sbjct: 209 RDSVAIALAKQVLTALRDDTGALADLLADDCMIYAPILGPLKKKEIVQSATVDLVDFFSGLDTDDNYHDARVDPFEPSRVWITTIPTTKVVG 300
BLAST of mRNA_H-elongata_contig181862.4871.1 vs. uniprot
Match: A0A830HS91_9CHLO (Uncharacterized protein n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HS91_9CHLO) HSP 1 Score: 65.9 bits (159), Expect = 7.900e-11 Identity = 42/91 (46.15%), Postives = 56/91 (61.54%), Query Frame = 1
Query: 28 AKQVLSAAR--DDPESLKDLLAEDVQIYAPVIGPLKKKDFMQSVTVDFADFF---AGLDVDNNWYDARVNPFEPSRVWVTTRTTAKVVGTI 285
AK+VL+A DDP DLLA+D + APV+GPL KK+F + FA F A D++ N+++ V+PFEP RVW TR TA GT+
Sbjct: 76 AKKVLAANNGCDDP----DLLADDFKFVAPVVGPLSKKEFTNA----FASFKIDDAFPDINANFHNFWVDPFEPGRVWYVTRATATHTGTL 158
BLAST of mRNA_H-elongata_contig181862.4871.1 vs. uniprot
Match: A0A813K376_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813K376_POLGL) HSP 1 Score: 63.2 bits (152), Expect = 1.220e-9 Identity = 38/93 (40.86%), Postives = 54/93 (58.06%), Query Frame = 1
Query: 19 VALAKQVLSAAR----DDPESLKDLLAEDVQIYAPVIGPLKKKDFMQSVTVDFADFFAGL-DVDNNWYDARVNPFEPSRVWVTTRTTAKVVGT 282
+A A+ +L+A R D S +LLAED + PV+GPL KK ++ +V DF +G D + W+ RV+PF+PSRVW+T R GT
Sbjct: 113 IAPAELILAAKRFLAYDGGVSAPELLAEDFKFVGPVVGPLAKKPYLSAV--GGFDFESGFPDANPEWHHFRVDPFDPSRVWMTARGRGTNTGT 203
BLAST of mRNA_H-elongata_contig181862.4871.1 vs. uniprot
Match: A0A813E6G2_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813E6G2_POLGL) HSP 1 Score: 62.0 bits (149), Expect = 2.510e-9 Identity = 34/81 (41.98%), Postives = 49/81 (60.49%), Query Frame = 1
Query: 19 VALAKQVLSAARDDPESLKDLLAEDVQIYAPVIGPLKKKDFMQSVT-VDFADFFAGLDVDNNWYDARVNPFEPSRVWVTTR 258
VA AK++L+ P + L+AED + PV+GPL KK ++ ++ D FF D + YD RV+PFEP+RVW T+R
Sbjct: 87 VARAKRILALNIGFPGEVGGLMAEDFEFAGPVVGPLSKKAYLDAIKGFDLLKFFP--DSNFEMYDFRVDPFEPNRVWFTSR 165
BLAST of mRNA_H-elongata_contig181862.4871.1 vs. uniprot
Match: A0A813IUL9_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813IUL9_POLGL) HSP 1 Score: 62.0 bits (149), Expect = 3.770e-9 Identity = 34/81 (41.98%), Postives = 49/81 (60.49%), Query Frame = 1
Query: 19 VALAKQVLSAARDDPESLKDLLAEDVQIYAPVIGPLKKKDFMQSVT-VDFADFFAGLDVDNNWYDARVNPFEPSRVWVTTR 258
VA AK++L+ P + L+AED + PV+GPL KK ++ ++ D FF D + YD RV+PFEP+RVW T+R
Sbjct: 78 VARAKRILALNIGFPGEVGGLMAEDFEFAGPVVGPLSKKAYLDAIKGFDLLKFFP--DSNFEMYDFRVDPFEPNRVWFTSR 156
BLAST of mRNA_H-elongata_contig181862.4871.1 vs. uniprot
Match: A0A7S2F2T3_9CHLO (Hypothetical protein n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A7S2F2T3_9CHLO) HSP 1 Score: 60.1 bits (144), Expect = 5.400e-9 Identity = 31/72 (43.06%), Postives = 45/72 (62.50%), Query Frame = 1
Query: 70 LKDLLAEDVQIYAPVIGPLKKKDFMQSV-TVDFADFFAGLDVDNNWYDARVNPFEPSRVWVTTRTTAKVVGT 282
+ D LA D Q PV+GPL K++F++++ T D F D+ +N+Y RV+PFEP RVW T+R + GT
Sbjct: 27 MADDLALDFQFVGPVVGPLAKEEFLKAIGTFDVTTGFP--DMQSNYYHFRVDPFEPDRVWFTSRPVGRHTGT 96
BLAST of mRNA_H-elongata_contig181862.4871.1 vs. uniprot
Match: A0A830HCK4_9CHLO (Rhodanese domain-containing protein n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HCK4_9CHLO) HSP 1 Score: 60.1 bits (144), Expect = 1.870e-8 Identity = 31/72 (43.06%), Postives = 45/72 (62.50%), Query Frame = 1
Query: 70 LKDLLAEDVQIYAPVIGPLKKKDFMQSV-TVDFADFFAGLDVDNNWYDARVNPFEPSRVWVTTRTTAKVVGT 282
+ D LA D Q PV+GPL K++F++++ T D F D+ +N+Y RV+PFEP RVW T+R + GT
Sbjct: 709 MADDLALDFQFVGPVVGPLAKEEFLKAIGTFDVTTGFP--DMQSNYYHFRVDPFEPDRVWFTSRPVGRHTGT 778
BLAST of mRNA_H-elongata_contig181862.4871.1 vs. uniprot
Match: A0A7S1I8N6_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1I8N6_9EUGL) HSP 1 Score: 59.7 bits (143), Expect = 1.950e-8 Identity = 33/87 (37.93%), Postives = 54/87 (62.07%), Query Frame = 1
Query: 19 VALAKQVLSAARDDPESLKDLLAEDVQIYAPVIGPLKKKDFMQSVTVDFADFFAGLDVDNNWYDARVNPFEPSRVWVTTRTTAKVVG 279
+A K++L A + E +DLLA+D Q AP++GPLK+++F++++ F A D+ N + V+P EP+RVW TR+T + G
Sbjct: 109 IATVKKIL--ALEFKEGTEDLLADDFQFVAPIVGPLKREEFLKAIN-QFDIKTAFPDLAANMWGFHVDPMEPNRVWYFTRSTGEHRG 192
BLAST of mRNA_H-elongata_contig181862.4871.1 vs. uniprot
Match: A0A813E2Q1_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813E2Q1_POLGL) HSP 1 Score: 59.3 bits (142), Expect = 2.400e-8 Identity = 35/88 (39.77%), Postives = 50/88 (56.82%), Query Frame = 1
Query: 19 VALAKQVLSAARDDPESLKDLLAEDVQIYAPVIGPLKKKDFMQSV-TVDFADFFAGLDVDNNWYDARVNPFEPSRVWVTTRTTAKVVG 279
VA +K++L+ P L+AED + PV+GPL K+ ++ S+ + F FF D YD RV+PFEP+RVW T+R T G
Sbjct: 57 VARSKRILALNIGFPGEEGGLMAEDFEFAGPVVGPLSKQAYLGSIKSFGFNTFFP--DAVFEMYDFRVDPFEPNRVWFTSRGTGTQTG 142
BLAST of mRNA_H-elongata_contig181862.4871.1 vs. uniprot
Match: A0A7S4GNJ9_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4GNJ9_9EUGL) HSP 1 Score: 58.2 bits (139), Expect = 6.670e-8 Identity = 29/71 (40.85%), Postives = 46/71 (64.79%), Query Frame = 1
Query: 73 KDLLAEDVQIYAPVIGPLKKKDFMQSVTVDFADFFAGL-DVDNNWYDARVNPFEPSRVWVTTRTTAKVVGT 282
KD++++D Q APV+GPL++ +F+ ++ D AD AG D++ N++ V+P EP+RVW RT GT
Sbjct: 114 KDMVSDDFQFVAPVVGPLERHEFLAAM--DSADLDAGFPDLNPNYWGFHVDPMEPNRVWFFNRTRGTHTGT 182 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig181862.4871.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 15
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig181862.4871.1 >prot_H-elongata_contig181862.4871.1 ID=prot_H-elongata_contig181862.4871.1|Name=mRNA_H-elongata_contig181862.4871.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=95bp LRDPIAVALAKQVLSAARDDPESLKDLLAEDVQIYAPVIGPLKKKDFMQSback to top mRNA from alignment at H-elongata_contig181862:151..435- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig181862.4871.1 ID=mRNA_H-elongata_contig181862.4871.1|Name=mRNA_H-elongata_contig181862.4871.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=285bp|location=Sequence derived from alignment at H-elongata_contig181862:151..435- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig181862:151..435- >mRNA_H-elongata_contig181862.4871.1 ID=mRNA_H-elongata_contig181862.4871.1|Name=mRNA_H-elongata_contig181862.4871.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=570bp|location=Sequence derived from alignment at H-elongata_contig181862:151..435- (Himanthalia elongata Himel1 dioecious)back to top |