mRNA_H-elongata_contig18077.4821.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig18077.4821.1
Unique NamemRNA_H-elongata_contig18077.4821.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig18077.4821.1 vs. uniprot
Match: D7FWV4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWV4_ECTSI)

HSP 1 Score: 184 bits (466), Expect = 1.850e-51
Identity = 103/201 (51.24%), Postives = 118/201 (58.71%), Query Frame = 2 
Query:  119 TLLDVSILVASGGWIDLRSGKYLQQASATLCRDCREYVGNHLRVDYSTPRALWPLKVPRIKIVANG--GGGK-------------------------------------------SGGKKA---------------SLPPLRVTGMTWERPLGDLARGRALPAGLENLKFTCSFRLFDVDSVSFPRTLLSLSFGQNFNQAI 541
            +LLDVS LVASGGW+DL SGK+LQ+AS TLCRDCREYVG+HLRVDYSTPRALWPL+   + +   G  GGG+                                           SGGK                 S+PPLRVT MTWERPL DLA GRALP GL +L F CSFR FDV  VSFP +LLSLSFGQNF+Q++
Sbjct:   91 SLLDVSFLVASGGWLDLASGKHLQEASGTLCRDCREYVGSHLRVDYSTPRALWPLRTVGVVLFGKGPGGGGRVHGIGNSAAAASGGVGVRRLAGGFIGKENAGGTGYRTGASSSASGGKGGLLSSRLQQQYGWKGRSIPPLRVTTMTWERPLSDLAHGRALPPGLHSLHFACSFRYFDVGWVSFPTSLLSLSFGQNFDQSV 291
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BLAST of mRNA_H-elongata_contig18077.4821.1 vs. uniprot
Match: A0A6H5KHB9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHB9_9PHAE)

HSP 1 Score: 181 bits (459), Expect = 2.000e-47
Identity = 103/203 (50.74%), Postives = 116/203 (57.14%), Query Frame = 2 
Query:  119 TLLDVSILVASGGWIDLRSGKYLQQASATLCRDCREYVGNHLRVDYSTPRALWPLKVPRIKIVANG--GGGK-------------------------------------------SGGKKA-----------------SLPPLRVTGMTWERPLGDLARGRALPAGLENLKFTCSFRLFDVDSVSFPRTLLSLSFGQNFNQAI 541
            +LLDVS LVASGGW+DL SGK+LQ+AS TLCRDCREYVG+HLRVDYSTPRALWPL+   + +   G  GGG+                                           SGGK                   S+PPLRVT MTWERPL DLA GRALP GL +L   CSFR FDV  VSFP +LLSLSFGQNF+Q I
Sbjct:   71 SLLDVSFLVASGGWLDLASGKHLQEASGTLCRDCREYVGSHLRVDYSTPRALWPLRTAGVVLFGRGPGGGGRMLSIGNSVATASGGVGVRRLAAGFNGKENAGGTGYRTGGSSSASGGKGGLLPWRLQQQQQHGWKGQSIPPLRVTTMTWERPLSDLAHGRALPPGLHSLHLACSFRYFDVGWVSFPTSLLSLSFGQNFDQGI 273
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18077.4821.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FWV4_ECTSI1.850e-5151.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KHB9_9PHAE2.000e-4750.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18077contigH-elongata_contig18077:4271..7213 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionFNIP
Ec32 orthologEc-08_004550.1
Hectar predicted targeting categoryother localisation
Exons3
Model size1195
Cds size1182
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18077.4821.1prot_H-elongata_contig18077.4821.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig18077 4284..7213 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930042.587752-UTR-H-elongata_contig18077:4270..42831622930042.587752-UTR-H-elongata_contig18077:4270..4283Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18077 4271..4283 +
1691679258.512193-UTR-H-elongata_contig18077:4270..42831691679258.512193-UTR-H-elongata_contig18077:4270..4283Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18077 4271..4283 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930042.6048496-CDS-H-elongata_contig18077:4283..51351622930042.6048496-CDS-H-elongata_contig18077:4283..5135Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18077 4284..5135 +
1691679258.5223427-CDS-H-elongata_contig18077:4283..51351691679258.5223427-CDS-H-elongata_contig18077:4283..5135Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18077 4284..5135 +
1622930042.6226025-CDS-H-elongata_contig18077:5895..60931622930042.6226025-CDS-H-elongata_contig18077:5895..6093Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18077 5896..6093 +
1691679258.531477-CDS-H-elongata_contig18077:5895..60931691679258.531477-CDS-H-elongata_contig18077:5895..6093Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18077 5896..6093 +
1622930042.6373527-CDS-H-elongata_contig18077:7081..72131622930042.6373527-CDS-H-elongata_contig18077:7081..7213Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18077 7082..7213 +
1691679258.5397904-CDS-H-elongata_contig18077:7081..72131691679258.5397904-CDS-H-elongata_contig18077:7081..7213Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18077 7082..7213 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig18077.4821.1

>prot_H-elongata_contig18077.4821.1 ID=prot_H-elongata_contig18077.4821.1|Name=mRNA_H-elongata_contig18077.4821.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=394bp
METQLVKFRIVASPSPMRDVADSPRIPSLERLVPLTLLDVSILVASGGWI
DLRSGKYLQQASATLCRDCREYVGNHLRVDYSTPRALWPLKVPRIKIVAN
GGGGKSGGKKASLPPLRVTGMTWERPLGDLARGRALPAGLENLKFTCSFR
LFDVDSVSFPRTLLSLSFGQNFNQAIDTIAWPPRLQRLEFGWEFNRSIDG
VLWPPGLKRLTFGQSFDCPIHAVSWPLGLEELTFGGRFNQPIHGGVFPPG
LRRLTFGWRFNQPIVEVSWPPRLQRLMFGSLFNHPIEGVKWPPGLERLIF
GRVFNQQIHGTVWASGLRQLALGDFFDQALDGVAWPASLEKLSLGNKFNQ
PVGGVAFPSRLEQLAFGWRFDQPIDEVVWPINLKQLIFDGGFNQ
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mRNA from alignment at H-elongata_contig18077:4271..7213+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig18077.4821.1 ID=mRNA_H-elongata_contig18077.4821.1|Name=mRNA_H-elongata_contig18077.4821.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2943bp|location=Sequence derived from alignment at H-elongata_contig18077:4271..7213+ (Himanthalia elongata Himel1 dioecious)
AGACACCTCCGACATGGAAACCCAGCTTGTCAAGTTCCGAATCGTGGCGT
CTCCCTCTCCGATGAGAGATGTCGCCGATTCGCCCCGGATCCCCTCGCTC
GAGCGACTCGTACCCCTGACATTGCTGGACGTGAGCATCCTGGTGGCGAG
CGGGGGCTGGATCGATCTGCGCTCGGGTAAGTACCTTCAGCAGGCCTCGG
CCACCCTGTGTCGGGACTGCCGCGAGTATGTCGGCAACCACCTGCGCGTC
GATTACTCGACACCCCGTGCGCTGTGGCCCTTGAAGGTGCCTAGGATCAA
GATAGTTGCTAACGGTGGTGGCGGCAAGAGTGGAGGCAAAAAGGCGTCGC
TTCCACCCCTGCGAGTGACGGGGATGACCTGGGAACGTCCCTTGGGGGAT
CTGGCGCGCGGGAGGGCCCTGCCGGCGGGGCTGGAGAACCTTAAGTTCAC
CTGCAGCTTCCGCCTCTTTGACGTGGACTCGGTTTCGTTCCCTCGCACCC
TCCTGAGCCTGTCGTTCGGGCAGAACTTCAACCAGGCGATCGACACCATC
GCGTGGCCGCCCCGCTTGCAGAGGCTGGAGTTCGGCTGGGAGTTCAACCG
GTCCATCGACGGTGTCCTGTGGCCCCCGGGGTTGAAGCGGCTGACATTCG
GGCAGAGCTTCGACTGCCCGATCCACGCGGTGTCCTGGCCGCTTGGGCTC
GAGGAGCTCACCTTCGGCGGCAGGTTCAACCAGCCAATCCACGGCGGGGT
TTTCCCCCCGGGCTTGAGGCGTCTCACTTTCGGGTGGCGTTTCAACCAGC
CCATTGTGGAGGTATCATGGCCACCCCGTCTGCAAAGGCTTATGTTCGGC
AGCTTGTTTAACCATGTACGCGCGCGGATTTTTGGGGGAAGTGAGGGATA
TGATTTCTCGGTGTATTTTGATTTTTTGTTTTGTTATGTCGTGGTATATG
CCGTTACCGCGTGGGGTTTTGAGATGTGTCCAAGCGTTTTCGTATCGCGC
GCTCACGTTTAATATTGTTAGTGCACGCGGGAGCGCGCAAAGAACGCGAC
GCTCGCGCGGTAGAGAGTCTACGCGGATAACTATTCGTGCAAAGCATTCG
CCGCTTGATTCACGCCGCTGATCGCAAACACTATAGGCAGTAGACAATTT
GTGAAGAAAACTAAGAATTAAAAAAGTCATGAGCGCGTGCCGTTGTCAAT
GTTTGGCGTTCGACCACCTTGGGTGCCACAGCCAGTCGGAGTCAGCCCGT
AGGCTAATCGGCCGCAATATCCCGCATAGGATGTCACAGCAGCTTGGTTC
ACATCCCAAAGCGAGTCGACCGGGTCAAGATACGGTCAACGAAACCCTGC
CGGATATAGCACGAAAACACCGAGTGATCTTCCACCCGTGTGACCTAAGG
CATCATCCCGAGAACCGATAGACCTCCGCGACCCCCGATCGGGACCGATT
CTCGCACCTTTTGAGCCTCTGGCTCGGCGTCAAAGTGTGTACCATATTGC
GTACCCTAGTGTATTATCGTTTTCTGCATTTGCTTTTCCTCTCCTCACCC
CGTTTTTCTACCGCCATCCATTTTCTCCCCAAATATATGTCGATATTTAT
CCACCCATACATTTATACGGAACAGCCCATCGAAGGCGTTAAGTGGCCTC
CAGGCCTGGAGAGGCTGATCTTCGGTAGGGTGTTCAACCAGCAGATTCAC
GGAACCGTTTGGGCGTCGGGGCTCCGGCAACTCGCGCTCGGAGACTTCTT
CGACCAGGCGCTGGACGGCGTTGCTTGGCCCGCGAGCCTTGAAAAGCTCT
CCCTGGGGAACAAGTTTAATCAGGTTTGTGAGTAGGGAGGGGAGAGAGGG
ATTATCTTACTGACGAAAATAACGCCTCTTTGTTGCTGTCTTCTTCTGTT
TAATTTGTGCCCTTCAAAAAAAAACCGCGCGCGGTTTCATTTCGTTTTAT
TTTATTTTATTTGTTTTCTTGTGGGGGAGGGCGGTCAATCGACGATACTG
ATGAGCAGGGCGACAGTCTCTTGCCGCGGACCTCGTTTGGAGGCGATTTA
GCTATATCTAACAATAAAATGAAGCAGTGCCTTTGACGCTTGGCATTCGC
GCTCCCGTCGTGAGAATAACATATAAGAGAGCTTTTCGAGTATGAAGAGT
AAGGGGGAAATGAGGTGGAGGTGGAGGTTTCCACAAACATGCACCACACC
GCCGACCCTGCCAAAAAGGATCGGCGCTCGAGCGTTATATCGGGAAACTC
GTCTCTAGGTTGCTCGGTGCCAGAGGGGGCTGGAGGGCTGTATATTAGTG
CGGCGTGGAAAAACACTCACCAATCATGACGTGTTTGTGTGTTGTGAACG
ATATCTCGCTCCTGCAAACGCCCTTGTCTGTGCAGCACTGCCCCCCCCCC
TTTTTCCAGCGGCCTTATTTTATTTTCCTTACAACCCCGCCCCTGTGGTC
GATAGTACGGTATAGTTTATAGTATAGTATCTCTTGTACTAGGTACAACA
GTTCTGAGTGTTCGAATCTCGGGATAAATTAATAAATTATGGCAGAACGG
AAAGGATTTAGACCTAGCTTTTAATATTAATATTCTTATTAATAGAAGGC
GAGCCATATTCAAAGTTCATTCAAAGTTCAAGTATATGTGTTTTGTCGGA
AGCTGACGACGTAAAAAAGTGTTGGTTGAACCTCTTATAGCCGTTGATTA
TTGTTATTATTACTATTATTATTATTATTATTATTATTATTATTATTACT
GTTATTATTTTATTTATTTTTTTCGCTTTTTTCCCCTTTTCTATTAAAAA
TAAATCACAAGCCTGTGGGAGGAGTGGCCTTCCCATCCCGGCTGGAACAG
CTGGCCTTTGGTTGGAGATTCGATCAGCCCATCGACGAGGTGGTATGGCC
GATTAACCTCAAGCAACTCATTTTCGACGGTGGATTTAACCAG
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Coding sequence (CDS) from alignment at H-elongata_contig18077:4271..7213+

>mRNA_H-elongata_contig18077.4821.1 ID=mRNA_H-elongata_contig18077.4821.1|Name=mRNA_H-elongata_contig18077.4821.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2364bp|location=Sequence derived from alignment at H-elongata_contig18077:4271..7213+ (Himanthalia elongata Himel1 dioecious)
ATGGAAACCCAGCTTGTCAAGTTCCGAATCGTGGCGTCTCCCTCTCCGAT
GAGAGATGTCGCCGATTCGCCCCGGATCCCCTCGCTCGAGCGACTCGTAC
CCCTGACATTGCTGGACGTGAGCATCCTGGTGGCGAGCGGGGGCTGGATC
GATCTGCGCTCGGGTAAGTACCTTCAGCAGGCCTCGGCCACCCTGTGTCG
GGACTGCCGCGAGTATGTCGGCAACCACCTGCGCGTCGATTACTCGACAC
CCCGTGCGCTGTGGCCCTTGAAGGTGCCTAGGATCAAGATAGTTGCTAAC
GGTGGTGGCGGCAAGAGTGGAGGCAAAAAGGCGTCGCTTCCACCCCTGCG
AGTGACGGGGATGACCTGGGAACGTCCCTTGGGGGATCTGGCGCGCGGGA
GGGCCCTGCCGGCGGGGCTGGAGAACCTTAAGTTCACCTGCAGCTTCCGC
CTCTTTGACGTGGACTCGGTTTCGTTCCCTCGCACCCTCCTGAGCCTGTC
GTTCGGGCAGAACTTCAACCAGGCGATCGACACCATCGCGTGGCCGCCCC
GCTTGCAGAGGCTGGAGTTCGGCTGGGAGTTCAACCGGTCCATCGACGGT
GTCCTGTGGCCCCCGGGGTTGAAGCGGCTGACATTCGGGCAGAGCTTCGA
CTGCCCGATCCACGCGGTGTCCTGGCCGCTTGGGCTCGAGGAGCTCACCT
TCGGCGGCAGGTTCAACCAGCCAATCCACGGCGGGGTTTTCCCCCCGGGC
TTGAGGCGTCTCACTTTCGGGTGGCGTTTCAACCAGCCCATTGTGGAGGT
ATCATGGCCACCCCGTCTGCAAAGGCTTATGTTCGGCAGCTTGTTTAACC
ATATGGAAACCCAGCTTGTCAAGTTCCGAATCGTGGCGTCTCCCTCTCCG
ATGAGAGATGTCGCCGATTCGCCCCGGATCCCCTCGCTCGAGCGACTCGT
ACCCCTGACATTGCTGGACGTGAGCATCCTGGTGGCGAGCGGGGGCTGGA
TCGATCTGCGCTCGGGTAAGTACCTTCAGCAGGCCTCGGCCACCCTGTGT
CGGGACTGCCGCGAGTATGTCGGCAACCACCTGCGCGTCGATTACTCGAC
ACCCCGTGCGCTGTGGCCCTTGAAGGTGCCTAGGATCAAGATAGTTGCTA
ACGGTGGTGGCGGCAAGAGTGGAGGCAAAAAGGCGTCGCTTCCACCCCTG
CGAGTGACGGGGATGACCTGGGAACGTCCCTTGGGGGATCTGGCGCGCGG
GAGGGCCCTGCCGGCGGGGCTGGAGAACCTTAAGTTCACCTGCAGCTTCC
GCCTCTTTGACGTGGACTCGGTTTCGTTCCCTCGCACCCTCCTGAGCCTG
TCGTTCGGGCAGAACTTCAACCAGGCGATCGACACCATCGCGTGGCCGCC
CCGCTTGCAGAGGCTGGAGTTCGGCTGGGAGTTCAACCGGTCCATCGACG
GTGTCCTGTGGCCCCCGGGGTTGAAGCGGCTGACATTCGGGCAGAGCTTC
GACTGCCCGATCCACGCGGTGTCCTGGCCGCTTGGGCTCGAGGAGCTCAC
CTTCGGCGGCAGGTTCAACCAGCCAATCCACGGCGGGGTTTTCCCCCCGG
GCTTGAGGCGTCTCACTTTCGGGTGGCGTTTCAACCAGCCCATTGTGGAG
GTATCATGGCCACCCCGTCTGCAAAGGCTTATGTTCGGCAGCTTGTTTAA
CCATCCCATCGAAGGCGTTAAGTGGCCTCCAGGCCTGGAGAGGCTGATCT
TCGGTAGGGTGTTCAACCAGCAGATTCACGGAACCGTTTGGGCGTCGGGG
CTCCGGCAACTCGCGCTCGGAGACTTCTTCGACCAGGCGCTGGACGGCGT
TGCTTGGCCCGCGAGCCTTGAAAAGCTCTCCCTGGGGAACAAGTTTAATC
AGCCCATCGAAGGCGTTAAGTGGCCTCCAGGCCTGGAGAGGCTGATCTTC
GGTAGGGTGTTCAACCAGCAGATTCACGGAACCGTTTGGGCGTCGGGGCT
CCGGCAACTCGCGCTCGGAGACTTCTTCGACCAGGCGCTGGACGGCGTTG
CTTGGCCCGCGAGCCTTGAAAAGCTCTCCCTGGGGAACAAGTTTAATCAG
CCTGTGGGAGGAGTGGCCTTCCCATCCCGGCTGGAACAGCTGGCCTTTGG
TTGGAGATTCGATCAGCCCATCGACGAGGTGGTATGGCCGATTAACCTCA
AGCAACTCATTTTCGACGGTGGATTTAACCAGCCTGTGGGAGGAGTGGCC
TTCCCATCCCGGCTGGAACAGCTGGCCTTTGGTTGGAGATTCGATCAGCC
CATCGACGAGGTGGTATGGCCGATTAACCTCAAGCAACTCATTTTCGACG
GTGGATTTAACCAG
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