prot_H-elongata_contig18077.4821.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig18077.4821.1
Unique Nameprot_H-elongata_contig18077.4821.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length394
Homology
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BLAST of mRNA_H-elongata_contig18077.4821.1 vs. uniprot
Match: D7FWV4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWV4_ECTSI)

HSP 1 Score: 184 bits (466), Expect = 1.670e-51
Identity = 103/201 (51.24%), Postives = 118/201 (58.71%), Query Frame = 0 
Query:   36 TLLDVSILVASGGWIDLRSGKYLQQASATLCRDCREYVGNHLRVDYSTPRALWPLKVPRIKIVANG--GGGK-------------------------------------------SGGKKA---------------SLPPLRVTGMTWERPLGDLARGRALPAGLENLKFTCSFRLFDVDSVSFPRTLLSLSFGQNFNQAI 176
            +LLDVS LVASGGW+DL SGK+LQ+AS TLCRDCREYVG+HLRVDYSTPRALWPL+   + +   G  GGG+                                           SGGK                 S+PPLRVT MTWERPL DLA GRALP GL +L F CSFR FDV  VSFP +LLSLSFGQNF+Q++
Sbjct:   91 SLLDVSFLVASGGWLDLASGKHLQEASGTLCRDCREYVGSHLRVDYSTPRALWPLRTVGVVLFGKGPGGGGRVHGIGNSAAAASGGVGVRRLAGGFIGKENAGGTGYRTGASSSASGGKGGLLSSRLQQQYGWKGRSIPPLRVTTMTWERPLSDLAHGRALPPGLHSLHFACSFRYFDVGWVSFPTSLLSLSFGQNFDQSV 291
[Close]
BLAST of mRNA_H-elongata_contig18077.4821.1 vs. uniprot
Match: A0A6H5KHB9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHB9_9PHAE)

HSP 1 Score: 181 bits (459), Expect = 1.800e-47
Identity = 103/203 (50.74%), Postives = 116/203 (57.14%), Query Frame = 0 
Query:   36 TLLDVSILVASGGWIDLRSGKYLQQASATLCRDCREYVGNHLRVDYSTPRALWPLKVPRIKIVANG--GGGK-------------------------------------------SGGKKA-----------------SLPPLRVTGMTWERPLGDLARGRALPAGLENLKFTCSFRLFDVDSVSFPRTLLSLSFGQNFNQAI 176
            +LLDVS LVASGGW+DL SGK+LQ+AS TLCRDCREYVG+HLRVDYSTPRALWPL+   + +   G  GGG+                                           SGGK                   S+PPLRVT MTWERPL DLA GRALP GL +L   CSFR FDV  VSFP +LLSLSFGQNF+Q I
Sbjct:   71 SLLDVSFLVASGGWLDLASGKHLQEASGTLCRDCREYVGSHLRVDYSTPRALWPLRTAGVVLFGRGPGGGGRMLSIGNSVATASGGVGVRRLAAGFNGKENAGGTGYRTGGSSSASGGKGGLLPWRLQQQQQHGWKGQSIPPLRVTTMTWERPLSDLAHGRALPPGLHSLHLACSFRYFDVGWVSFPTSLLSLSFGQNFDQGI 273
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18077.4821.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FWV4_ECTSI1.670e-5151.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KHB9_9PHAE1.800e-4750.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008615FNIPPFAMPF05725FNIPcoord: 194..235
e-value: 5.0E-5
score: 23.4
coord: 282..308
e-value: 4.4E-5
score: 23.6
coord: 238..280
e-value: 2.4E-9
score: 37.2
coord: 348..388
e-value: 1.4E-6
score: 28.4
NoneNo IPR availablePANTHERPTHR32134UNCHARACTERIZEDcoord: 238..391
coord: 208..301
coord: 136..214
NoneNo IPR availablePANTHERPTHR32134:SF86coord: 238..391
coord: 208..301
coord: 136..214
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 140..373

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18077contigH-elongata_contig18077:4284..7213 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18077.4821.1mRNA_H-elongata_contig18077.4821.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig18077 4271..7213 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig18077.4821.1 ID=prot_H-elongata_contig18077.4821.1|Name=mRNA_H-elongata_contig18077.4821.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=394bp
METQLVKFRIVASPSPMRDVADSPRIPSLERLVPLTLLDVSILVASGGWI
DLRSGKYLQQASATLCRDCREYVGNHLRVDYSTPRALWPLKVPRIKIVAN
GGGGKSGGKKASLPPLRVTGMTWERPLGDLARGRALPAGLENLKFTCSFR
LFDVDSVSFPRTLLSLSFGQNFNQAIDTIAWPPRLQRLEFGWEFNRSIDG
VLWPPGLKRLTFGQSFDCPIHAVSWPLGLEELTFGGRFNQPIHGGVFPPG
LRRLTFGWRFNQPIVEVSWPPRLQRLMFGSLFNHPIEGVKWPPGLERLIF
GRVFNQQIHGTVWASGLRQLALGDFFDQALDGVAWPASLEKLSLGNKFNQ
PVGGVAFPSRLEQLAFGWRFDQPIDEVVWPINLKQLIFDGGFNQ
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008615FNIP