mRNA_H-elongata_contig179629.4764.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig179629.4764.1
Unique NamemRNA_H-elongata_contig179629.4764.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig179629.4764.1 vs. uniprot
Match: A0A6H5K458_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K458_9PHAE)

HSP 1 Score: 183 bits (464), Expect = 1.020e-53
Identity = 79/98 (80.61%), Postives = 90/98 (91.84%), Query Frame = 1 
Query:    1 RNHVQCLQRWKKVLTPGLVKGQWSREEDELLTKLVEEGHKNWGALAARIPGRTSKQCRERWCHHLDPRIVKGEWTEEEDQTLVAMHEEMGNKWATIAQ 294
            RNHVQCLQRWKKVLTPGLVKGQW+ EED+LL  +V EGHKNWG+L+AR+PGRTSKQCRERWCHHLDPRIVKG WTEEEDQ +V++ ++MGNKWA IAQ
Sbjct:  101 RNHVQCLQRWKKVLTPGLVKGQWTPEEDKLLVSIVNEGHKNWGSLSARVPGRTSKQCRERWCHHLDPRIVKGGWTEEEDQIIVSLQQQMGNKWAKIAQ 198
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BLAST of mRNA_H-elongata_contig179629.4764.1 vs. uniprot
Match: D7FQG8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQG8_ECTSI)

HSP 1 Score: 180 bits (457), Expect = 6.110e-51
Identity = 78/98 (79.59%), Postives = 88/98 (89.80%), Query Frame = 1 
Query:    1 RNHVQCLQRWKKVLTPGLVKGQWSREEDELLTKLVEEGHKNWGALAARIPGRTSKQCRERWCHHLDPRIVKGEWTEEEDQTLVAMHEEMGNKWATIAQ 294
            RNHVQCLQRWKKVLTPGLVKGQW+ EED+LL  +V EGHKNWG+L+ARIPGRTSKQCRERWCHHLDPRIVKG WTE EDQ ++ + ++MGNKWA IAQ
Sbjct:   50 RNHVQCLQRWKKVLTPGLVKGQWTPEEDQLLVSIVNEGHKNWGSLSARIPGRTSKQCRERWCHHLDPRIVKGGWTEAEDQMIILLQQQMGNKWAQIAQ 147
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BLAST of mRNA_H-elongata_contig179629.4764.1 vs. uniprot
Match: A0A7S2UU49_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UU49_9STRA)

HSP 1 Score: 152 bits (383), Expect = 6.030e-43
Identity = 68/97 (70.10%), Postives = 78/97 (80.41%), Query Frame = 1 
Query:    1 RNHVQCLQRWKKVLTPGLVKGQWSREEDELLTKLVEEGHKNWGALAARIPGRTSKQCRERWCHHLDPRIVKGEWTEEEDQTLVAMHEEMGNKWATIA 291
            RNHVQCLQRWKKVL PGLVKGQWS  ED  L  LV +G KNWG LAA++PGRTSKQCRERW HHLDP + KGE+T EED T++ +  E+GNKW+ IA
Sbjct:   60 RNHVQCLQRWKKVLKPGLVKGQWSALEDAKLVDLVGKGFKNWGQLAAQMPGRTSKQCRERWSHHLDPSVKKGEYTTEEDNTILRLQSELGNKWSEIA 156
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BLAST of mRNA_H-elongata_contig179629.4764.1 vs. uniprot
Match: H3G911_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G911_PHYRM)

HSP 1 Score: 142 bits (359), Expect = 1.840e-41
Identity = 62/97 (63.92%), Postives = 76/97 (78.35%), Query Frame = 1 
Query:    1 RNHVQCLQRWKKVLTPGLVKGQWSREEDELLTKLVEEGHKNWGALAARIPGRTSKQCRERWCHHLDPRIVKGEWTEEEDQTLVAMHEEMGNKWATIA 291
            RNH QCLQRW KVL PGLVKG W  +ED+LL +LV EG KNWG +A RIPGRTSKQCRERW +HLDP IV+GE++ EED+ ++     +GN+W+ IA
Sbjct:   42 RNHTQCLQRWTKVLAPGLVKGHWRPDEDDLLKELVAEGRKNWGQVATRIPGRTSKQCRERWYNHLDPSIVRGEYSAEEDRMILDAQARLGNRWSAIA 138
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BLAST of mRNA_H-elongata_contig179629.4764.1 vs. uniprot
Match: A0A2P4Y3D9_9STRA (Myb-like DNA-binding protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y3D9_9STRA)

HSP 1 Score: 146 bits (369), Expect = 3.680e-41
Identity = 64/97 (65.98%), Postives = 77/97 (79.38%), Query Frame = 1 
Query:    1 RNHVQCLQRWKKVLTPGLVKGQWSREEDELLTKLVEEGHKNWGALAARIPGRTSKQCRERWCHHLDPRIVKGEWTEEEDQTLVAMHEEMGNKWATIA 291
            RNH QCLQRW KVL PGLVKG W  +EDELL +LV EG KNWG +A RIPGRTSKQCRERW +HLDP IV+GE+T+EED+ ++     +GN+W+ IA
Sbjct:  124 RNHTQCLQRWTKVLAPGLVKGHWRPDEDELLKELVAEGRKNWGQVATRIPGRTSKQCRERWYNHLDPSIVRGEYTQEEDRMILDAQARLGNRWSAIA 220
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BLAST of mRNA_H-elongata_contig179629.4764.1 vs. uniprot
Match: D0NJN5_PHYIT (Myb-like DNA-binding protein, putative n=2 Tax=Phytophthora TaxID=4783 RepID=D0NJN5_PHYIT)

HSP 1 Score: 143 bits (361), Expect = 7.530e-41
Identity = 62/97 (63.92%), Postives = 76/97 (78.35%), Query Frame = 1 
Query:    1 RNHVQCLQRWKKVLTPGLVKGQWSREEDELLTKLVEEGHKNWGALAARIPGRTSKQCRERWCHHLDPRIVKGEWTEEEDQTLVAMHEEMGNKWATIA 291
            RNH QCLQRW KVL PGLVKG W  EED+LL +LV EG KNWG +A RIPGRTSKQCRERW +HLDP I++GE++ EED+ ++     +GN+W+ IA
Sbjct:  115 RNHTQCLQRWTKVLAPGLVKGHWRPEEDDLLKELVAEGRKNWGQVATRIPGRTSKQCRERWYNHLDPSIIRGEYSPEEDRMILDAQARLGNRWSAIA 211
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BLAST of mRNA_H-elongata_contig179629.4764.1 vs. uniprot
Match: A0A3M6VKU0_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VKU0_9STRA)

HSP 1 Score: 142 bits (359), Expect = 1.970e-40
Identity = 61/97 (62.89%), Postives = 76/97 (78.35%), Query Frame = 1 
Query:    1 RNHVQCLQRWKKVLTPGLVKGQWSREEDELLTKLVEEGHKNWGALAARIPGRTSKQCRERWCHHLDPRIVKGEWTEEEDQTLVAMHEEMGNKWATIA 291
            RNH QCLQRW KVL PGLVKG W  +EDELL +LV EG KNWG +A RIPGRTSKQCRERW +HLDP I++GE+++ ED+ ++     +GN+W+ IA
Sbjct:  132 RNHTQCLQRWTKVLAPGLVKGHWRPDEDELLKELVAEGRKNWGQVATRIPGRTSKQCRERWYNHLDPSIIRGEYSQAEDRMILDAQSRLGNRWSAIA 228
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BLAST of mRNA_H-elongata_contig179629.4764.1 vs. uniprot
Match: K3X9G8_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X9G8_GLOUD)

HSP 1 Score: 141 bits (355), Expect = 2.310e-40
Identity = 63/98 (64.29%), Postives = 76/98 (77.55%), Query Frame = 1 
Query:    1 RNHVQCLQRWKKVLTPGLVKGQWSREEDELLTKLVEEGHKNWGALAARIPGRTSKQCRERWCHHLDPRIVKGEWTEEEDQTLVAMHEEMGNKWATIAQ 294
            RNH QCLQRW+KVL PGLVKG WS EED++L  LV +G  NWG +A RIPGRT KQCRERW +HLDP I KG +TE+ED  +++  E +GNKW+ IAQ
Sbjct:  101 RNHAQCLQRWRKVLKPGLVKGHWSFEEDQVLEFLVTQGCNNWGQIAERIPGRTPKQCRERWKNHLDPAINKGPYTEDEDSIILSAQERLGNKWSQIAQ 198
[Close]
BLAST of mRNA_H-elongata_contig179629.4764.1 vs. uniprot
Match: D8LM16_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM16_ECTSI)

HSP 1 Score: 144 bits (362), Expect = 2.510e-40
Identity = 64/97 (65.98%), Postives = 72/97 (74.23%), Query Frame = 1 
Query:    1 RNHVQCLQRWKKVLTPGLVKGQWSREEDELLTKLVEEGHKNWGALAARIPGRTSKQCRERWCHHLDPRIVKGEWTEEEDQTLVAMHEEMGNKWATIA 291
            RNHVQCLQRWKKVL PGLVKGQW  EED  L KL     KNWG L+  + GRTSKQCRERWCHHLDP I KG +TEEED  ++    E+GN+W+ IA
Sbjct:  139 RNHVQCLQRWKKVLRPGLVKGQWDAEEDAALMKLATAPFKNWGVLSQSMSGRTSKQCRERWCHHLDPSINKGAYTEEEDNIIIETQAELGNRWSQIA 235
[Close]
BLAST of mRNA_H-elongata_contig179629.4764.1 vs. uniprot
Match: A0A2D4C0J9_PYTIN (Uncharacterized protein n=4 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C0J9_PYTIN)

HSP 1 Score: 150 bits (378), Expect = 3.080e-40
Identity = 67/97 (69.07%), Postives = 77/97 (79.38%), Query Frame = 1 
Query:    1 RNHVQCLQRWKKVLTPGLVKGQWSREEDELLTKLVEEGHKNWGALAARIPGRTSKQCRERWCHHLDPRIVKGEWTEEEDQTLVAMHEEMGNKWATIA 291
            RNH QCLQRW KVL PGLVKG W  EEDELL +LV EG KNWG +A RIPGRTSKQCRERW +HLDP IV+GE+T EED+ ++     +GNKW+TIA
Sbjct:  195 RNHTQCLQRWTKVLAPGLVKGHWRPEEDELLKELVAEGRKNWGQVANRIPGRTSKQCRERWYNHLDPSIVRGEYTAEEDRIIIEAQARLGNKWSTIA 291
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig179629.4764.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K458_9PHAE1.020e-5380.61MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D7FQG8_ECTSI6.110e-5179.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2UU49_9STRA6.030e-4370.10Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
H3G911_PHYRM1.840e-4163.92Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A2P4Y3D9_9STRA3.680e-4165.98Myb-like DNA-binding protein (Fragment) n=1 Tax=Ph... [more]
D0NJN5_PHYIT7.530e-4163.92Myb-like DNA-binding protein, putative n=2 Tax=Phy... [more]
A0A3M6VKU0_9STRA1.970e-4062.89Uncharacterized protein n=2 Tax=Peronospora effusa... [more]
K3X9G8_GLOUD2.310e-4064.29Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
D8LM16_ECTSI2.510e-4065.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A2D4C0J9_PYTIN3.080e-4069.07Uncharacterized protein n=4 Tax=Pythium insidiosum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig179629contigH-elongata_contig179629:2..1017 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score182.2
Seed ortholog evalue1.2e-43
Seed eggNOG ortholog2880.D7FQG8
EggNOG free text desc.RNA polymerase II transcription regulator recruiting activity
EggNOG OGsCOG5147@1,KOG0048@2759
Ec32 ortholog descriptionSANT/Myb domain transcription factor
Ec32 orthologEc-22_002960.1
COG Functional cat.ADK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size294
Cds size294
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930036.154331-CDS-H-elongata_contig179629:1..451622930036.154331-CDS-H-elongata_contig179629:1..45Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig179629 2..45 +
1691679256.1174672-CDS-H-elongata_contig179629:1..451691679256.1174672-CDS-H-elongata_contig179629:1..45Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig179629 2..45 +
1622930036.1713989-CDS-H-elongata_contig179629:767..10171622930036.1713989-CDS-H-elongata_contig179629:767..1017Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig179629 768..1017 +
1691679256.1292272-CDS-H-elongata_contig179629:767..10171691679256.1292272-CDS-H-elongata_contig179629:767..1017Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig179629 768..1017 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig179629.4764.1prot_H-elongata_contig179629.4764.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig179629 2..1017 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig179629.4764.1

>prot_H-elongata_contig179629.4764.1 ID=prot_H-elongata_contig179629.4764.1|Name=mRNA_H-elongata_contig179629.4764.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=98bp
RNHVQCLQRWKKVLTPGLVKGQWSREEDELLTKLVEEGHKNWGALAARIP
GRTSKQCRERWCHHLDPRIVKGEWTEEEDQTLVAMHEEMGNKWATIAQ
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mRNA from alignment at H-elongata_contig179629:2..1017+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig179629.4764.1 ID=mRNA_H-elongata_contig179629.4764.1|Name=mRNA_H-elongata_contig179629.4764.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1016bp|location=Sequence derived from alignment at H-elongata_contig179629:2..1017+ (Himanthalia elongata Himel1 dioecious)
AGGAACCACGTACAGTGCCTTCAGAGATGGAAAAAGGTTCTCACGTGAGT
CAAAGGAACGGTCGATTAATCTTCCCTGACATACCATACATACCTTATAT
ACATTAGAGCTATTGAGGTAGACTAGTCGTGGGATGGGACCGCTCAAATC
GATCTTGAGACCTTACCCCAAGGAAACAAGCTGGCTGACGGTATCAATAT
TAACCCTTATGGAACTTGATCTGTTTTTTACACACTAAATTCAATACAAA
AGTTGAAATCCAGTTCCAAAAGGGTTAATTAATAGTACGAAGTTACGAGA
TGTGCTTCCATTCCGGAGGGAGTTGTATGGCTATCGGCTATCGGGGTTGG
GAGGAATCACGCTTGCGGTGATATCGTTTGTTGAACTACCGTAACTCTTT
GTGTACGATAGTCTTGTACTGTGAGAGGTACTCGAATACCATCGGTAAAA
AAGAGTTGGTACGTACGTGATTCTTTATGGTTTAAACAATGATTTGATGT
GGCGCTGGCGTTCTTAACGGCTCTCTTAACGGCTCTCGACTTGTAGTGTA
CCAGTTAGTCGACATGTAGTTCCTGTAGTTTGGCGGAGTGTAGCCCGCTG
AAGCAGGCAGCAATAATAATGACAACGCCGCCGCTCCCCTGTGTGGAGTA
TGTTATATGTAATGACCACACACACAGCGGGCCACAACGGAGGTCGCGTG
TTTTAAGTATTGACTGGTTGAATGGATGGATCGGAGCTGACCGACGCCAC
ATAACACCCGACGCAGGCCTGGTCTGGTGAAGGGACAATGGTCGCGGGAA
GAGGATGAGCTCCTCACGAAGCTCGTGGAGGAGGGCCACAAGAACTGGGG
GGCTCTAGCCGCGCGCATCCCTGGGAGAACCTCGAAGCAATGCCGGGAGC
GTTGGTGCCACCACCTTGACCCACGGATCGTGAAAGGGGAATGGACGGAG
GAGGAGGACCAGACCCTCGTTGCCATGCACGAGGAGATGGGGAACAAGTG
GGCCACCATCGCGCAG
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Coding sequence (CDS) from alignment at H-elongata_contig179629:2..1017+

>mRNA_H-elongata_contig179629.4764.1 ID=mRNA_H-elongata_contig179629.4764.1|Name=mRNA_H-elongata_contig179629.4764.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=588bp|location=Sequence derived from alignment at H-elongata_contig179629:2..1017+ (Himanthalia elongata Himel1 dioecious)
AGGAACCACGTACAGTGCCTTCAGAGATGGAAAAAGGTTCTCACAGGAAC
CACGTACAGTGCCTTCAGAGATGGAAAAAGGTTCTCACGCCTGGTCTGGT
GAAGGGACAATGGTCGCGGGAAGAGGATGAGCTCCTCACGAAGCTCGTGG
AGGAGGGCCACAAGAACTGGGGGGCTCTAGCCGCGCGCATCCCTGGGAGA
ACCTCGAAGCAATGCCGGGAGCGTTGGTGCCACCACCTTGACCCACGGAT
CGTGAAAGGGGAATGGACGGAGGAGGAGGACCAGACCCTCGTTGCCATGC
ACGAGGAGATGGGGAACAAGTGGGCCACCATCGCGCAGGCCTGGTCTGGT
GAAGGGACAATGGTCGCGGGAAGAGGATGAGCTCCTCACGAAGCTCGTGG
AGGAGGGCCACAAGAACTGGGGGGCTCTAGCCGCGCGCATCCCTGGGAGA
ACCTCGAAGCAATGCCGGGAGCGTTGGTGCCACCACCTTGACCCACGGAT
CGTGAAAGGGGAATGGACGGAGGAGGAGGACCAGACCCTCGTTGCCATGC
ACGAGGAGATGGGGAACAAGTGGGCCACCATCGCGCAG
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