mRNA_H-elongata_contig176708.4630.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig176708.4630.1
Unique NamemRNA_H-elongata_contig176708.4630.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig176708.4630.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 152 bits (385), Expect = 1.600e-37
Identity = 106/302 (35.10%), Postives = 152/302 (50.33%), Query Frame = 1
Query:  100 TEKALAATQRG-------PRDIIKFHQVLGHPAEKITRNTARMAGVQLSGIWRTCVHCSESRVRRYAVPKSTENRADRRAGQLFIDLSGPFHVTSHGGNRFVILCIDDFTRFKIVRFLKHKSNATNALRDIINDYFAPESLK-IGVIRADGEGEW-HGQFLSFLSKLGIKRDSTPPYTPQYNGVVERALRLLRDKTVA-------LLRGVMEGKSGRLWAEAMAYACDIWNRCTFSSLDSVTLPYELWYGRRPTFDNIPPFGTVGYLR----RSKPGHKLAPRGASYIMLGLAPDFPRDAFR 945
            TE A AA   G       P DI  FH   GH  E + R TA+  G  L G  R C+ CS ++     +P  T  RA ++  ++F+DLSG   V S GG  + ++  DD+TR+  V FLKHKS+A  A    + +  A  +   + V+R+D  GE+  G+F     K  IK++ TP ++P+YNGV ERAL L++D  +A       L  G     S  LWAEA+A++C+  N  + +S      PYE+W+G  P     PP  T  +L+    + K  HK  P+      LG   +  RD  R
Sbjct:  489 TEHACAAIAPGNAKAPSTPVDINDFHCAHGHSHEVLLRTTAKQQGTTLVGELRECLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPS--LWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPP-----PPGATYPFLKPAVYKVKRTHKSEPKAQKCFYLGPGINTNRDCVR 783          
BLAST of mRNA_H-elongata_contig176708.4630.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 152 bits (385), Expect = 1.620e-37
Identity = 106/302 (35.10%), Postives = 152/302 (50.33%), Query Frame = 1
Query:  100 TEKALAATQRG-------PRDIIKFHQVLGHPAEKITRNTARMAGVQLSGIWRTCVHCSESRVRRYAVPKSTENRADRRAGQLFIDLSGPFHVTSHGGNRFVILCIDDFTRFKIVRFLKHKSNATNALRDIINDYFAPESLK-IGVIRADGEGEW-HGQFLSFLSKLGIKRDSTPPYTPQYNGVVERALRLLRDKTVA-------LLRGVMEGKSGRLWAEAMAYACDIWNRCTFSSLDSVTLPYELWYGRRPTFDNIPPFGTVGYLR----RSKPGHKLAPRGASYIMLGLAPDFPRDAFR 945
            TE A AA   G       P DI  FH   GH  E + R TA+  G  L G  R C+ CS ++     +P  T  RA ++  ++F+DLSG   V S GG  + ++  DD+TR+  V FLKHKS+A  A    + +  A  +   + V+R+D  GE+  G+F     K  IK++ TP ++P+YNGV ERAL L++D  +A       L  G     S  LWAEA+A++C+  N  + +S      PYE+W+G  P     PP  T  +L+    + K  HK  P+      LG   +  RD  R
Sbjct:  502 TEHACAAIAPGNAKAPSTPVDINDFHCAHGHSHEVLLRTTAKQQGTTLVGELRECLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPS--LWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPP-----PPGATYPFLKPAVYKVKRTHKSEPKAQKCFYLGPGINTNRDCVR 796          
BLAST of mRNA_H-elongata_contig176708.4630.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 152 bits (385), Expect = 1.630e-37
Identity = 106/302 (35.10%), Postives = 152/302 (50.33%), Query Frame = 1
Query:  100 TEKALAATQRG-------PRDIIKFHQVLGHPAEKITRNTARMAGVQLSGIWRTCVHCSESRVRRYAVPKSTENRADRRAGQLFIDLSGPFHVTSHGGNRFVILCIDDFTRFKIVRFLKHKSNATNALRDIINDYFAPESLK-IGVIRADGEGEW-HGQFLSFLSKLGIKRDSTPPYTPQYNGVVERALRLLRDKTVA-------LLRGVMEGKSGRLWAEAMAYACDIWNRCTFSSLDSVTLPYELWYGRRPTFDNIPPFGTVGYLR----RSKPGHKLAPRGASYIMLGLAPDFPRDAFR 945
            TE A AA   G       P DI  FH   GH  E + R TA+  G  L G  R C+ CS ++     +P  T  RA ++  ++F+DLSG   V S GG  + ++  DD+TR+  V FLKHKS+A  A    + +  A  +   + V+R+D  GE+  G+F     K  IK++ TP ++P+YNGV ERAL L++D  +A       L  G     S  LWAEA+A++C+  N  + +S      PYE+W+G  P     PP  T  +L+    + K  HK  P+      LG   +  RD  R
Sbjct:  645 TEHACAAIAPGNAKAPSTPVDINDFHCAHGHSHEVLLRTTAKQQGTTLVGELRECLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPS--LWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPP-----PPGATYPFLKPAVYKVKRTHKSEPKAQKCFYLGPGINTNRDCVR 939          
BLAST of mRNA_H-elongata_contig176708.4630.1 vs. uniprot
Match: A0A6H5K1N9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1N9_9PHAE)

HSP 1 Score: 149 bits (377), Expect = 1.700e-36
Identity = 98/284 (34.51%), Postives = 144/284 (50.70%), Query Frame = 1
Query:  133 PRDIIKFHQVLGHPAEKITRNTARMAGVQLSGIWRTCVHCSESRVRRYAVPKSTENRADRRAGQLFIDLSGPFHVTSHGGNRFVILCIDDFTRFKIVRFLKHKSNATNALRDIINDYFAPESLK-IGVIRADGEGEW-HGQFLSFLSKLGIKRDSTPPYTPQYNGVVERALRLLRDKTVA-------LLRGVMEGKSGRLWAEAMAYACDIWNRCTFSSLDSVTLPYELWYGRRPTFDNIPPFGTVGYLR----RSKPGHKLAPRGASYIMLGLAPDFPRDAFR 945
            P DI  FH   GH  E + R TA+  G  L G  R C+ CS ++     +P  T  RA ++  + F++LSG     S GG  + ++  DD+TR+  V FLKHKS+A  A    + +  A  +   + V+R+D  GE+  G+F     K  IK++ TP ++P+YNGV ERAL L++D  +A       L  G    +S  LWAEA+A++C+  N  + +S      PYE+W+G  P     PP  T  +L+    + K  HK  P       LG   +  RD  R
Sbjct:  305 PVDINDFHCAHGHSHEVLLRTTAKQQGTTLVGELRECLGCSTAKGLSEPIPNKTSTRAFKKLQRFFVELSGKARAQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLKEKRADGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAAIAARIQAPTLYPGAPNYRS--LWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPP-----PPGATYPFLKPAVYKVKRTHKSEPTAQKCFYLGPGINTNRDCVR 581          
BLAST of mRNA_H-elongata_contig176708.4630.1 vs. uniprot
Match: A0A6H5JTI6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTI6_9PHAE)

HSP 1 Score: 149 bits (377), Expect = 1.820e-36
Identity = 105/302 (34.77%), Postives = 151/302 (50.00%), Query Frame = 1
Query:  100 TEKALAATQRG-------PRDIIKFHQVLGHPAEKITRNTARMAGVQLSGIWRTCVHCSESRVRRYAVPKSTENRADRRAGQLFIDLSGPFHVTSHGGNRFVILCIDDFTRFKIVRFLKHKSNATNALRDIINDYFAPESLK-IGVIRADGEGEW-HGQFLSFLSKLGIKRDSTPPYTPQYNGVVERALRLLRDKTVA-------LLRGVMEGKSGRLWAEAMAYACDIWNRCTFSSLDSVTLPYELWYGRRPTFDNIPPFGTVGYLR----RSKPGHKLAPRGASYIMLGLAPDFPRDAFR 945
            TE A AA   G       P DI  FH    H  E + R TA+  G  L G  R C+ CS ++     +P  T  RA ++  ++F+DLSG   V S GG  + ++  DD+TR+  V FLKHKS+A  A    + +  A  +   + V+R+D  GE+  G+F     K  IK++ TP ++P+YNGV ERAL L++D  +A       L  G     S  LWAEA+A++C+  N  + +S      PYE+W+G  P     PP  T  +L+    + K  HK  P+      LG   +  RD  R
Sbjct:  654 TEHAYAAIAPGNVKASNAPVDINDFHCAHRHSHEVLLRTTAKQQGTTLVGELRECLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPS--LWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPP-----PPGATYPFLKPAVYKVKRTHKSEPKAQKCFYLGPGINTNRDCVR 948          
BLAST of mRNA_H-elongata_contig176708.4630.1 vs. uniprot
Match: A0A6H5LL52_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL52_9PHAE)

HSP 1 Score: 144 bits (363), Expect = 3.070e-36
Identity = 96/249 (38.55%), Postives = 131/249 (52.61%), Query Frame = 1
Query:  109 ALAATQRGPRDIIKFHQVLGHPAEKITRNTARMAGVQLSG-IWRTCVHCSESRVRRYAVPKSTENRADRRAGQLFIDLSGPFHVTSHGGNRFVILCIDDFTRFKIVRFLKHKSNATNALRDIINDYFAPE-SLKIGVIRADGEGEWHGQFLSFLSKLGIKRDSTPPYTPQYNGVVERALRLLRDKTVALLRGVME-----GKSGRLWAEAMAYACDIWNRCTFSSLDSVTLPYELWYGRRPTFDNIPPF 834
            A AAT   P D+   H   GH  E++ + TA+  GVQL+G     C+ CS S+ +   + KST+ RA  +  +LF++L G     S GGN + ++  DD TR+  V FLKHKS+A  A    + DY A     ++ V R DG GE+ GQF     + GIK++ TPP TP+YNGV ERAL LL D  +A      E       S  LWAEA++ AC   N    +       P EL++G  P   +  PF
Sbjct:  127 AKAAT---PTDLNSDHNSHGHTHEELLQKTAKQQGVQLTGGPLLPCLGCSMSKGQVKPISKSTDTRAANKLFRLFLNLGGRMQFKSIGGNWYTLIIRDDCTRWTRVFFLKHKSDAAAAFEQYLADYRAETVPCEVFVARTDGGGEFQGQFAEVCRRSGIKQEFTPPNTPKYNGVAERALGLLADSALASRIQAKEMFPDAPVSPGLWAEAISCACHQMNCTATTGNPGHKSPEELFHGTPPPVGSTHPF 372          
BLAST of mRNA_H-elongata_contig176708.4630.1 vs. uniprot
Match: A0A6H5JXF7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXF7_9PHAE)

HSP 1 Score: 144 bits (364), Expect = 9.070e-35
Identity = 99/290 (34.14%), Postives = 144/290 (49.66%), Query Frame = 1
Query:  115 AATQRGPRDIIKFHQVLGHPAEKITRNTARMAGVQLSGIWRTCVHCSESRVRRYAVPKSTENRADRRAGQLFIDLSGPFHVTSHGGNRFVILCIDDFTRFKIVRFLKHKSNATNALRDIINDYFAPESLK-IGVIRADGEGEW-HGQFLSFLSKLGIKRDSTPPYTPQYNGVVERALRLLRDKTVA-------LLRGVMEGKSGRLWAEAMAYACDIWNRCTFSSLDSVTLPYELWYGRRPTFDNIPPFGTVGYLR----RSKPGHKLAPRGASYIMLGLAPDFPRDAFR 945
            A     P +I  FH   GH  E + R TA+  G  L G  R C+ CS ++     +P  T  RA +R  ++F+DLSG   V S  G  + ++  D +TR+  V FLKHKS+A  A    + +  A  +   + V+R+D  GE+  G+F     K  IK++ TP ++P+YNGV ERAL L++D  +A       L  G     S   WAEA+A+AC+  N  + +S      PYE+W+G  P     PP  T  +L+    + K  HK  P+      LG   +  RD  R
Sbjct:  527 AKASSAPVEINDFHYAHGHSHEVLLRTTAKQQGTTLVGELRECLGCSTAKGLSKLIPNKTSTRAAKRLQRVFMDLSGKARVQSLVGKWYTLIVKDVYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGTPNYPS--FWAEAIAWACNALNCTSTTSNPEKKSPYEMWHGHPP-----PPGATYPFLKPAVYKVKRTHKSEPKAQKCFYLGPGINTNRDCVR 809          
BLAST of mRNA_H-elongata_contig176708.4630.1 vs. uniprot
Match: A0A6H5JM30_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM30_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 3.580e-33
Identity = 97/282 (34.40%), Postives = 140/282 (49.65%), Query Frame = 1
Query:  118 ATQRGPRDIIKFHQVLGHPAEKITRNTARMAGVQLS-GIWRTCVHCSESRVRRYAVPKSTENRADRRAGQLFIDLSGPFHVTSHGGNRFVILCIDDFTRFKIVRFLKHKSNATNALRDIINDYFAPE-SLKIGVIRADGEGEWHGQFLSFLSKLGIKRDSTPPYTPQYNGVVERALRLLRDKTVALLRGVMEGKS--------GRLWAEAMAYACDIWNRCTFSSLDSVTLPYELWYGRRPTFDNIPPFGTVGYLRRSKPGHKLAPRGASYIMLGLAPDFPR 933
            A    P D+ ++H   G   E + R TA   GVQL+ G    C+ CS S  +   V KST  RA ++  ++++DL G     S GGN + ++  DDF+R+  V FLKHKS+A   L   + DY       ++ + R DG GE+ GQF     + GIK++ TPP+TP+YNGV ERAL  L   T A L   ++             LWAEA++ AC   N     S +     YE+++   P   +  PF     L+ S+   K  P+G     +G A + PR
Sbjct:  578 AKAANPTDLNEYHLAHGQARETLLRITAEQQGVQLTDGPLLPCLGCSMSTGQVKPVQKSTSTRAVKKLFRVYLDLGGKMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGLEKFLADYRTKGVPCEVYIARTDGGGEFQGQFAEVCRRHGIKQEFTPPHTPKYNGVAERALGALGLITDAALASRIQATQLFPDAPNHPGLWAEAISCACHQLNCTATKSNEGDKSAYEMFHDSPPPVGSTYPFLKPAMLK-SRRKAKSQPKGEKGWYVGPAHNHPR 858          
BLAST of mRNA_H-elongata_contig176708.4630.1 vs. uniprot
Match: A0A6H5JAQ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAQ2_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 3.620e-33
Identity = 98/282 (34.75%), Postives = 139/282 (49.29%), Query Frame = 1
Query:  118 ATQRGPRDIIKFHQVLGHPAEKITRNTARMAGVQLS-GIWRTCVHCSESRVRRYAVPKSTENRADRRAGQLFIDLSGPFHVTSHGGNRFVILCIDDFTRFKIVRFLKHKSNATNALRDIINDYFAPE-SLKIGVIRADGEGEWHGQFLSFLSKLGIKRDSTPPYTPQYNGVVERALRLLRDKTVALLRGVME-----GKSGRLWAEAMAYACDIWNRCTFSSLDSVTLPYELWYGRRPTFDNIPPF--GTVGYLRRSKPGHKLAPRGASYIMLGLAPDFPRD 936
            A    P D+ ++H   GH  E + R TA   GVQL+ G    C+ CS S+ +   V K T  RA +   ++++DL G     S GGN + ++  DDF+R+  V FLKHKS+A       + DY       +  + RADG GE+ GQF     + GIK++ TPP+TP+YNGV ERAL L+ D  +A      +          LWAEA++ AC   N     S +     YE+++       +  PF    +  LRR     K  P+G     LG A + PRD
Sbjct:  633 AKAANPTDLNEYHLAHGHAHETLLRITAEQQGVQLTDGPLLPCLGCSMSKAQVKPVQKCTSTRAVQNFFRVYLDLEGTMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGFEKFLADYRTNGVPCEDFIARADGGGEFQGQFAEVCRRHGIKQEFTPPHTPKYNGVAERALGLITDAALASRIQATQLFPDAPNHPGLWAEAISCACHQLNCTATKSNEGDKSAYEMFHNSPSPVGSTYPFLKPAMFKLRRKA---KSQPKGEKGWYLGPAHNHPRD 911          
BLAST of mRNA_H-elongata_contig176708.4630.1 vs. uniprot
Match: A0A6H5K2B9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2B9_9PHAE)

HSP 1 Score: 136 bits (343), Expect = 4.120e-32
Identity = 93/282 (32.98%), Postives = 138/282 (48.94%), Query Frame = 1
Query:  133 PRDIIKFHQVLGHPAEKITRNTARMAGVQLSGIWRTCVHCSESRVRRYAVPKSTENRADRRAGQLFIDLSGPFHVTSHGGNRFVILCIDDFTRFKIVRFLKHKSNATNALRDIINDYFAPESLK-IGVIRADGEGEW-HGQFLSFLSKLGIKRDSTPPYTPQYNGVVERALRLLRDKTVALLRGVMEGKSG-----RLWAEAMAYACDIWNRCTFSSLDSVTLPYELWYGRRPTFDNIPPFGTVGYLR----RSKPGHKLAPRGASYIMLGLAPDFPRDAFR 945
            P DI  FH   GH  E + R T +  G  L G  R C+  S ++     +P  T  RA ++  ++F+DLSG   V S GG  + ++  D +TR+  V FLKHKS+A  A    + +  A  +   + V+R+D  GE+  G+F     K  IK++ TP ++P+YNGV ER L L++D  +          SG      LWAEA+A++C+  N  + +S      PYE+W+G  P      P  T  +L+    + K  HK  P       LG   +  RD  R
Sbjct:  279 PVDINDFHCTHGHSHEVLLRTTTKQQGTTLVGELRECLGRSTAKGLSKPIPNETSTRAVKKLQRVFVDLSGKAGVQSFGGKWYTLIVKDGYTRWSHVYFLKHKSDAAEAFERYLAENRADGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERVLGLIKDAELVARIHAPTLYSGPPNYPSLWAEAIAWSCNSLNCTSTTSNPEKKSPYEIWHGHPPL-----PGATYPFLKPAVYKDKGTHKSEPTAQKCFYLGPGTNTNRDFVR 555          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig176708.4630.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JZQ8_9PHAE1.600e-3735.10Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE1.620e-3735.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE1.630e-3735.10Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5K1N9_9PHAE1.700e-3634.51Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JTI6_9PHAE1.820e-3634.77Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5LL52_9PHAE3.070e-3638.55Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JXF7_9PHAE9.070e-3534.14Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JM30_9PHAE3.580e-3334.40Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5JAQ2_9PHAE3.620e-3334.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2B9_9PHAE4.120e-3232.98Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig176708contigH-elongata_contig176708:156..1130 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score130.6
Seed ortholog evalue1.4e-27
Seed eggNOG ortholog4558.Sb07g028153.1
EggNOG free text desc.GAG-pre-integrase domain
EggNOG OGs37THH@33090,3GG2K@35493,3IMWS@38820,3M2QC@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorymitochondrion
Exons1
Model size975
Cds size975
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930022.6486988-CDS-H-elongata_contig176708:155..11301622930022.6486988-CDS-H-elongata_contig176708:155..1130Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig176708 156..1130 +
1691679249.951484-CDS-H-elongata_contig176708:155..11301691679249.951484-CDS-H-elongata_contig176708:155..1130Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig176708 156..1130 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig176708.4630.1prot_H-elongata_contig176708.4630.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig176708 156..1130 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig176708.4630.1

>prot_H-elongata_contig176708.4630.1 ID=prot_H-elongata_contig176708.4630.1|Name=mRNA_H-elongata_contig176708.4630.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=325bp
MPLFSRPIRPQHGLLEIKVCRHVAARSRLPKLPTEKALAATQRGPRDIIK
FHQVLGHPAEKITRNTARMAGVQLSGIWRTCVHCSESRVRRYAVPKSTEN
RADRRAGQLFIDLSGPFHVTSHGGNRFVILCIDDFTRFKIVRFLKHKSNA
TNALRDIINDYFAPESLKIGVIRADGEGEWHGQFLSFLSKLGIKRDSTPP
YTPQYNGVVERALRLLRDKTVALLRGVMEGKSGRLWAEAMAYACDIWNRC
TFSSLDSVTLPYELWYGRRPTFDNIPPFGTVGYLRRSKPGHKLAPRGASY
IMLGLAPDFPRDAFRGRDLTTGQIL
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mRNA from alignment at H-elongata_contig176708:156..1130+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig176708.4630.1 ID=mRNA_H-elongata_contig176708.4630.1|Name=mRNA_H-elongata_contig176708.4630.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=975bp|location=Sequence derived from alignment at H-elongata_contig176708:156..1130+ (Himanthalia elongata Himel1 dioecious)
ATGCCACTCTTTTCCCGCCCAATTCGACCTCAACACGGCCTTTTGGAGAT CAAGGTGTGCCGCCACGTCGCTGCGAGGAGTCGCCTACCCAAGCTCCCAA CAGAAAAAGCGCTCGCGGCGACGCAGCGCGGCCCGCGGGATATCATTAAG TTCCATCAGGTGCTGGGGCACCCGGCAGAGAAGATCACGCGCAACACGGC CCGTATGGCGGGCGTGCAATTAAGCGGAATTTGGCGAACATGTGTACACT GCTCCGAATCTAGGGTGCGGCGATACGCCGTGCCTAAATCCACGGAGAAT CGGGCTGACAGGCGCGCGGGACAGCTGTTTATCGATCTCTCAGGCCCCTT TCACGTAACGTCACACGGAGGAAACAGATTCGTCATACTGTGCATTGACG ACTTCACCCGCTTCAAAATTGTCCGTTTCCTCAAGCACAAGAGCAACGCC ACGAATGCGTTAAGGGATATAATCAACGACTACTTCGCACCCGAGAGCCT CAAGATCGGCGTCATCCGCGCGGACGGTGAGGGAGAATGGCACGGTCAGT TTCTGTCTTTCCTGAGTAAGCTCGGAATCAAGCGCGACTCCACACCCCCA TATACCCCCCAATACAATGGCGTCGTAGAGCGCGCTCTGAGGCTACTGCG CGACAAGACTGTGGCCCTGCTGCGAGGTGTAATGGAGGGTAAGAGCGGCC GTCTATGGGCGGAAGCTATGGCGTACGCATGCGATATATGGAACAGATGC ACCTTCTCCTCCCTCGACAGCGTCACCTTGCCATATGAGCTTTGGTACGG CCGACGTCCGACATTCGACAACATCCCCCCATTCGGGACCGTGGGATATC TACGGCGGTCGAAGCCGGGGCACAAACTAGCCCCCCGCGGGGCGAGCTAC ATCATGCTCGGGCTGGCCCCCGACTTCCCGCGGGATGCTTTCCGGGGGCG TGACCTCACCACAGGCCAGATCCTC
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Coding sequence (CDS) from alignment at H-elongata_contig176708:156..1130+

>mRNA_H-elongata_contig176708.4630.1 ID=mRNA_H-elongata_contig176708.4630.1|Name=mRNA_H-elongata_contig176708.4630.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1950bp|location=Sequence derived from alignment at H-elongata_contig176708:156..1130+ (Himanthalia elongata Himel1 dioecious)
ATGCCACTCTTTTCCCGCCCAATTCGACCTCAACACGGCCTTTTGGAGAT
CAAGGTGTGCCGCCACGTCGCTGCGAGGAGTCGCCTACCCAAGCTCCCAA
CAGAAAAAGCGCTCGCGGCGACGCAGCGCGGCCCGCGGGATATCATTAAG
TTCCATCAGGTGCTGGGGCACCCGGCAGAGAAGATCACGCGCAACACGGC
CCGTATGGCGGGCGTGCAATTAAGCGGAATTTGGCGAACATGTGTACACT
GCTCCGAATCTAGGGTGCGGCGATACGCCGTGCCTAAATCCACGGAGAAT
CGGGCTGACAGGCGCGCGGGACAGCTGTTTATCGATCTCTCAGGCCCCTT
TCACGTAACGTCACACGGAGGAAACAGATTCGTCATACTGTGCATTGACG
ACTTCACCCGCTTCAAAATTGTCCGTTTCCTCAAGCACAAGAGCAACGCC
ACGAATGCGTTAAGGGATATAATCAACGACTACTTCGCACCCGAGAGCCT
CAAGATCGGCGTCATCCGCGCGGACGGTGAGGGAGAATGGCACGGTCAGT
TTCTGTCTTTCCTGAGTAAGCTCGGAATCAAGCGCGACTCCACACCCCCA
TATACCCCCCAATACAATGGCGTCGTAGAGCGCGCTCTGAGGCTACTGCG
CGACAAGACTGTGGCCCTGCTGCGAGGTGTAATGGAGGGTAAGAGCGGCC
GTCTATGGGCGGAAGCTATGGCGTACGCATGCGATATATGGAACAGATGC
ACCTTCTCCTCCCTCGACAGCGTCACCTTGCCATATGAGCTTTGGTACGG
CCGACGTCCGACATTCGACAACATCCCCCCATTCGGGACCGTGGGATATC
TACGGCGGTCGAAGCCGGGGCACAAACTAGCCCCCCGCGGGGCGAGCTAC
ATCATGCTCGGGCTGGCCCCCGACTTCCCGCGGGATGCTTTCCGGGGGCG
TGACCTCACCACAGGCCAGATCCTCATGCCACTCTTTTCCCGCCCAATTC
GACCTCAACACGGCCTTTTGGAGATCAAGGTGTGCCGCCACGTCGCTGCG
AGGAGTCGCCTACCCAAGCTCCCAACAGAAAAAGCGCTCGCGGCGACGCA
GCGCGGCCCGCGGGATATCATTAAGTTCCATCAGGTGCTGGGGCACCCGG
CAGAGAAGATCACGCGCAACACGGCCCGTATGGCGGGCGTGCAATTAAGC
GGAATTTGGCGAACATGTGTACACTGCTCCGAATCTAGGGTGCGGCGATA
CGCCGTGCCTAAATCCACGGAGAATCGGGCTGACAGGCGCGCGGGACAGC
TGTTTATCGATCTCTCAGGCCCCTTTCACGTAACGTCACACGGAGGAAAC
AGATTCGTCATACTGTGCATTGACGACTTCACCCGCTTCAAAATTGTCCG
TTTCCTCAAGCACAAGAGCAACGCCACGAATGCGTTAAGGGATATAATCA
ACGACTACTTCGCACCCGAGAGCCTCAAGATCGGCGTCATCCGCGCGGAC
GGTGAGGGAGAATGGCACGGTCAGTTTCTGTCTTTCCTGAGTAAGCTCGG
AATCAAGCGCGACTCCACACCCCCATATACCCCCCAATACAATGGCGTCG
TAGAGCGCGCTCTGAGGCTACTGCGCGACAAGACTGTGGCCCTGCTGCGA
GGTGTAATGGAGGGTAAGAGCGGCCGTCTATGGGCGGAAGCTATGGCGTA
CGCATGCGATATATGGAACAGATGCACCTTCTCCTCCCTCGACAGCGTCA
CCTTGCCATATGAGCTTTGGTACGGCCGACGTCCGACATTCGACAACATC
CCCCCATTCGGGACCGTGGGATATCTACGGCGGTCGAAGCCGGGGCACAA
ACTAGCCCCCCGCGGGGCGAGCTACATCATGCTCGGGCTGGCCCCCGACT
TCCCGCGGGATGCTTTCCGGGGGCGTGACCTCACCACAGGCCAGATCCTC
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