mRNA_H-elongata_contig176708.4630.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig176708.4630.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE) HSP 1 Score: 152 bits (385), Expect = 1.600e-37 Identity = 106/302 (35.10%), Postives = 152/302 (50.33%), Query Frame = 1
Query: 100 TEKALAATQRG-------PRDIIKFHQVLGHPAEKITRNTARMAGVQLSGIWRTCVHCSESRVRRYAVPKSTENRADRRAGQLFIDLSGPFHVTSHGGNRFVILCIDDFTRFKIVRFLKHKSNATNALRDIINDYFAPESLK-IGVIRADGEGEW-HGQFLSFLSKLGIKRDSTPPYTPQYNGVVERALRLLRDKTVA-------LLRGVMEGKSGRLWAEAMAYACDIWNRCTFSSLDSVTLPYELWYGRRPTFDNIPPFGTVGYLR----RSKPGHKLAPRGASYIMLGLAPDFPRDAFR 945
TE A AA G P DI FH GH E + R TA+ G L G R C+ CS ++ +P T RA ++ ++F+DLSG V S GG + ++ DD+TR+ V FLKHKS+A A + + A + + V+R+D GE+ G+F K IK++ TP ++P+YNGV ERAL L++D +A L G S LWAEA+A++C+ N + +S PYE+W+G P PP T +L+ + K HK P+ LG + RD R
Sbjct: 489 TEHACAAIAPGNAKAPSTPVDINDFHCAHGHSHEVLLRTTAKQQGTTLVGELRECLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPS--LWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPP-----PPGATYPFLKPAVYKVKRTHKSEPKAQKCFYLGPGINTNRDCVR 783
BLAST of mRNA_H-elongata_contig176708.4630.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE) HSP 1 Score: 152 bits (385), Expect = 1.620e-37 Identity = 106/302 (35.10%), Postives = 152/302 (50.33%), Query Frame = 1
Query: 100 TEKALAATQRG-------PRDIIKFHQVLGHPAEKITRNTARMAGVQLSGIWRTCVHCSESRVRRYAVPKSTENRADRRAGQLFIDLSGPFHVTSHGGNRFVILCIDDFTRFKIVRFLKHKSNATNALRDIINDYFAPESLK-IGVIRADGEGEW-HGQFLSFLSKLGIKRDSTPPYTPQYNGVVERALRLLRDKTVA-------LLRGVMEGKSGRLWAEAMAYACDIWNRCTFSSLDSVTLPYELWYGRRPTFDNIPPFGTVGYLR----RSKPGHKLAPRGASYIMLGLAPDFPRDAFR 945
TE A AA G P DI FH GH E + R TA+ G L G R C+ CS ++ +P T RA ++ ++F+DLSG V S GG + ++ DD+TR+ V FLKHKS+A A + + A + + V+R+D GE+ G+F K IK++ TP ++P+YNGV ERAL L++D +A L G S LWAEA+A++C+ N + +S PYE+W+G P PP T +L+ + K HK P+ LG + RD R
Sbjct: 502 TEHACAAIAPGNAKAPSTPVDINDFHCAHGHSHEVLLRTTAKQQGTTLVGELRECLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPS--LWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPP-----PPGATYPFLKPAVYKVKRTHKSEPKAQKCFYLGPGINTNRDCVR 796
BLAST of mRNA_H-elongata_contig176708.4630.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE) HSP 1 Score: 152 bits (385), Expect = 1.630e-37 Identity = 106/302 (35.10%), Postives = 152/302 (50.33%), Query Frame = 1
Query: 100 TEKALAATQRG-------PRDIIKFHQVLGHPAEKITRNTARMAGVQLSGIWRTCVHCSESRVRRYAVPKSTENRADRRAGQLFIDLSGPFHVTSHGGNRFVILCIDDFTRFKIVRFLKHKSNATNALRDIINDYFAPESLK-IGVIRADGEGEW-HGQFLSFLSKLGIKRDSTPPYTPQYNGVVERALRLLRDKTVA-------LLRGVMEGKSGRLWAEAMAYACDIWNRCTFSSLDSVTLPYELWYGRRPTFDNIPPFGTVGYLR----RSKPGHKLAPRGASYIMLGLAPDFPRDAFR 945
TE A AA G P DI FH GH E + R TA+ G L G R C+ CS ++ +P T RA ++ ++F+DLSG V S GG + ++ DD+TR+ V FLKHKS+A A + + A + + V+R+D GE+ G+F K IK++ TP ++P+YNGV ERAL L++D +A L G S LWAEA+A++C+ N + +S PYE+W+G P PP T +L+ + K HK P+ LG + RD R
Sbjct: 645 TEHACAAIAPGNAKAPSTPVDINDFHCAHGHSHEVLLRTTAKQQGTTLVGELRECLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPS--LWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPP-----PPGATYPFLKPAVYKVKRTHKSEPKAQKCFYLGPGINTNRDCVR 939
BLAST of mRNA_H-elongata_contig176708.4630.1 vs. uniprot
Match: A0A6H5K1N9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1N9_9PHAE) HSP 1 Score: 149 bits (377), Expect = 1.700e-36 Identity = 98/284 (34.51%), Postives = 144/284 (50.70%), Query Frame = 1
Query: 133 PRDIIKFHQVLGHPAEKITRNTARMAGVQLSGIWRTCVHCSESRVRRYAVPKSTENRADRRAGQLFIDLSGPFHVTSHGGNRFVILCIDDFTRFKIVRFLKHKSNATNALRDIINDYFAPESLK-IGVIRADGEGEW-HGQFLSFLSKLGIKRDSTPPYTPQYNGVVERALRLLRDKTVA-------LLRGVMEGKSGRLWAEAMAYACDIWNRCTFSSLDSVTLPYELWYGRRPTFDNIPPFGTVGYLR----RSKPGHKLAPRGASYIMLGLAPDFPRDAFR 945
P DI FH GH E + R TA+ G L G R C+ CS ++ +P T RA ++ + F++LSG S GG + ++ DD+TR+ V FLKHKS+A A + + A + + V+R+D GE+ G+F K IK++ TP ++P+YNGV ERAL L++D +A L G +S LWAEA+A++C+ N + +S PYE+W+G P PP T +L+ + K HK P LG + RD R
Sbjct: 305 PVDINDFHCAHGHSHEVLLRTTAKQQGTTLVGELRECLGCSTAKGLSEPIPNKTSTRAFKKLQRFFVELSGKARAQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLKEKRADGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAAIAARIQAPTLYPGAPNYRS--LWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPP-----PPGATYPFLKPAVYKVKRTHKSEPTAQKCFYLGPGINTNRDCVR 581
BLAST of mRNA_H-elongata_contig176708.4630.1 vs. uniprot
Match: A0A6H5JTI6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTI6_9PHAE) HSP 1 Score: 149 bits (377), Expect = 1.820e-36 Identity = 105/302 (34.77%), Postives = 151/302 (50.00%), Query Frame = 1
Query: 100 TEKALAATQRG-------PRDIIKFHQVLGHPAEKITRNTARMAGVQLSGIWRTCVHCSESRVRRYAVPKSTENRADRRAGQLFIDLSGPFHVTSHGGNRFVILCIDDFTRFKIVRFLKHKSNATNALRDIINDYFAPESLK-IGVIRADGEGEW-HGQFLSFLSKLGIKRDSTPPYTPQYNGVVERALRLLRDKTVA-------LLRGVMEGKSGRLWAEAMAYACDIWNRCTFSSLDSVTLPYELWYGRRPTFDNIPPFGTVGYLR----RSKPGHKLAPRGASYIMLGLAPDFPRDAFR 945
TE A AA G P DI FH H E + R TA+ G L G R C+ CS ++ +P T RA ++ ++F+DLSG V S GG + ++ DD+TR+ V FLKHKS+A A + + A + + V+R+D GE+ G+F K IK++ TP ++P+YNGV ERAL L++D +A L G S LWAEA+A++C+ N + +S PYE+W+G P PP T +L+ + K HK P+ LG + RD R
Sbjct: 654 TEHAYAAIAPGNVKASNAPVDINDFHCAHRHSHEVLLRTTAKQQGTTLVGELRECLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPS--LWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPP-----PPGATYPFLKPAVYKVKRTHKSEPKAQKCFYLGPGINTNRDCVR 948
BLAST of mRNA_H-elongata_contig176708.4630.1 vs. uniprot
Match: A0A6H5LL52_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL52_9PHAE) HSP 1 Score: 144 bits (363), Expect = 3.070e-36 Identity = 96/249 (38.55%), Postives = 131/249 (52.61%), Query Frame = 1
Query: 109 ALAATQRGPRDIIKFHQVLGHPAEKITRNTARMAGVQLSG-IWRTCVHCSESRVRRYAVPKSTENRADRRAGQLFIDLSGPFHVTSHGGNRFVILCIDDFTRFKIVRFLKHKSNATNALRDIINDYFAPE-SLKIGVIRADGEGEWHGQFLSFLSKLGIKRDSTPPYTPQYNGVVERALRLLRDKTVALLRGVME-----GKSGRLWAEAMAYACDIWNRCTFSSLDSVTLPYELWYGRRPTFDNIPPF 834
A AAT P D+ H GH E++ + TA+ GVQL+G C+ CS S+ + + KST+ RA + +LF++L G S GGN + ++ DD TR+ V FLKHKS+A A + DY A ++ V R DG GE+ GQF + GIK++ TPP TP+YNGV ERAL LL D +A E S LWAEA++ AC N + P EL++G P + PF
Sbjct: 127 AKAAT---PTDLNSDHNSHGHTHEELLQKTAKQQGVQLTGGPLLPCLGCSMSKGQVKPISKSTDTRAANKLFRLFLNLGGRMQFKSIGGNWYTLIIRDDCTRWTRVFFLKHKSDAAAAFEQYLADYRAETVPCEVFVARTDGGGEFQGQFAEVCRRSGIKQEFTPPNTPKYNGVAERALGLLADSALASRIQAKEMFPDAPVSPGLWAEAISCACHQMNCTATTGNPGHKSPEELFHGTPPPVGSTHPF 372
BLAST of mRNA_H-elongata_contig176708.4630.1 vs. uniprot
Match: A0A6H5JXF7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXF7_9PHAE) HSP 1 Score: 144 bits (364), Expect = 9.070e-35 Identity = 99/290 (34.14%), Postives = 144/290 (49.66%), Query Frame = 1
Query: 115 AATQRGPRDIIKFHQVLGHPAEKITRNTARMAGVQLSGIWRTCVHCSESRVRRYAVPKSTENRADRRAGQLFIDLSGPFHVTSHGGNRFVILCIDDFTRFKIVRFLKHKSNATNALRDIINDYFAPESLK-IGVIRADGEGEW-HGQFLSFLSKLGIKRDSTPPYTPQYNGVVERALRLLRDKTVA-------LLRGVMEGKSGRLWAEAMAYACDIWNRCTFSSLDSVTLPYELWYGRRPTFDNIPPFGTVGYLR----RSKPGHKLAPRGASYIMLGLAPDFPRDAFR 945
A P +I FH GH E + R TA+ G L G R C+ CS ++ +P T RA +R ++F+DLSG V S G + ++ D +TR+ V FLKHKS+A A + + A + + V+R+D GE+ G+F K IK++ TP ++P+YNGV ERAL L++D +A L G S WAEA+A+AC+ N + +S PYE+W+G P PP T +L+ + K HK P+ LG + RD R
Sbjct: 527 AKASSAPVEINDFHYAHGHSHEVLLRTTAKQQGTTLVGELRECLGCSTAKGLSKLIPNKTSTRAAKRLQRVFMDLSGKARVQSLVGKWYTLIVKDVYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGTPNYPS--FWAEAIAWACNALNCTSTTSNPEKKSPYEMWHGHPP-----PPGATYPFLKPAVYKVKRTHKSEPKAQKCFYLGPGINTNRDCVR 809
BLAST of mRNA_H-elongata_contig176708.4630.1 vs. uniprot
Match: A0A6H5JM30_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM30_9PHAE) HSP 1 Score: 140 bits (352), Expect = 3.580e-33 Identity = 97/282 (34.40%), Postives = 140/282 (49.65%), Query Frame = 1
Query: 118 ATQRGPRDIIKFHQVLGHPAEKITRNTARMAGVQLS-GIWRTCVHCSESRVRRYAVPKSTENRADRRAGQLFIDLSGPFHVTSHGGNRFVILCIDDFTRFKIVRFLKHKSNATNALRDIINDYFAPE-SLKIGVIRADGEGEWHGQFLSFLSKLGIKRDSTPPYTPQYNGVVERALRLLRDKTVALLRGVMEGKS--------GRLWAEAMAYACDIWNRCTFSSLDSVTLPYELWYGRRPTFDNIPPFGTVGYLRRSKPGHKLAPRGASYIMLGLAPDFPR 933
A P D+ ++H G E + R TA GVQL+ G C+ CS S + V KST RA ++ ++++DL G S GGN + ++ DDF+R+ V FLKHKS+A L + DY ++ + R DG GE+ GQF + GIK++ TPP+TP+YNGV ERAL L T A L ++ LWAEA++ AC N S + YE+++ P + PF L+ S+ K P+G +G A + PR
Sbjct: 578 AKAANPTDLNEYHLAHGQARETLLRITAEQQGVQLTDGPLLPCLGCSMSTGQVKPVQKSTSTRAVKKLFRVYLDLGGKMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGLEKFLADYRTKGVPCEVYIARTDGGGEFQGQFAEVCRRHGIKQEFTPPHTPKYNGVAERALGALGLITDAALASRIQATQLFPDAPNHPGLWAEAISCACHQLNCTATKSNEGDKSAYEMFHDSPPPVGSTYPFLKPAMLK-SRRKAKSQPKGEKGWYVGPAHNHPR 858
BLAST of mRNA_H-elongata_contig176708.4630.1 vs. uniprot
Match: A0A6H5JAQ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAQ2_9PHAE) HSP 1 Score: 140 bits (352), Expect = 3.620e-33 Identity = 98/282 (34.75%), Postives = 139/282 (49.29%), Query Frame = 1
Query: 118 ATQRGPRDIIKFHQVLGHPAEKITRNTARMAGVQLS-GIWRTCVHCSESRVRRYAVPKSTENRADRRAGQLFIDLSGPFHVTSHGGNRFVILCIDDFTRFKIVRFLKHKSNATNALRDIINDYFAPE-SLKIGVIRADGEGEWHGQFLSFLSKLGIKRDSTPPYTPQYNGVVERALRLLRDKTVALLRGVME-----GKSGRLWAEAMAYACDIWNRCTFSSLDSVTLPYELWYGRRPTFDNIPPF--GTVGYLRRSKPGHKLAPRGASYIMLGLAPDFPRD 936
A P D+ ++H GH E + R TA GVQL+ G C+ CS S+ + V K T RA + ++++DL G S GGN + ++ DDF+R+ V FLKHKS+A + DY + + RADG GE+ GQF + GIK++ TPP+TP+YNGV ERAL L+ D +A + LWAEA++ AC N S + YE+++ + PF + LRR K P+G LG A + PRD
Sbjct: 633 AKAANPTDLNEYHLAHGHAHETLLRITAEQQGVQLTDGPLLPCLGCSMSKAQVKPVQKCTSTRAVQNFFRVYLDLEGTMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGFEKFLADYRTNGVPCEDFIARADGGGEFQGQFAEVCRRHGIKQEFTPPHTPKYNGVAERALGLITDAALASRIQATQLFPDAPNHPGLWAEAISCACHQLNCTATKSNEGDKSAYEMFHNSPSPVGSTYPFLKPAMFKLRRKA---KSQPKGEKGWYLGPAHNHPRD 911
BLAST of mRNA_H-elongata_contig176708.4630.1 vs. uniprot
Match: A0A6H5K2B9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2B9_9PHAE) HSP 1 Score: 136 bits (343), Expect = 4.120e-32 Identity = 93/282 (32.98%), Postives = 138/282 (48.94%), Query Frame = 1
Query: 133 PRDIIKFHQVLGHPAEKITRNTARMAGVQLSGIWRTCVHCSESRVRRYAVPKSTENRADRRAGQLFIDLSGPFHVTSHGGNRFVILCIDDFTRFKIVRFLKHKSNATNALRDIINDYFAPESLK-IGVIRADGEGEW-HGQFLSFLSKLGIKRDSTPPYTPQYNGVVERALRLLRDKTVALLRGVMEGKSG-----RLWAEAMAYACDIWNRCTFSSLDSVTLPYELWYGRRPTFDNIPPFGTVGYLR----RSKPGHKLAPRGASYIMLGLAPDFPRDAFR 945
P DI FH GH E + R T + G L G R C+ S ++ +P T RA ++ ++F+DLSG V S GG + ++ D +TR+ V FLKHKS+A A + + A + + V+R+D GE+ G+F K IK++ TP ++P+YNGV ER L L++D + SG LWAEA+A++C+ N + +S PYE+W+G P P T +L+ + K HK P LG + RD R
Sbjct: 279 PVDINDFHCTHGHSHEVLLRTTTKQQGTTLVGELRECLGRSTAKGLSKPIPNETSTRAVKKLQRVFVDLSGKAGVQSFGGKWYTLIVKDGYTRWSHVYFLKHKSDAAEAFERYLAENRADGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERVLGLIKDAELVARIHAPTLYSGPPNYPSLWAEAIAWSCNSLNCTSTTSNPEKKSPYEIWHGHPPL-----PGATYPFLKPAVYKDKGTHKSEPTAQKCFYLGPGTNTNRDFVR 555 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig176708.4630.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig176708.4630.1 >prot_H-elongata_contig176708.4630.1 ID=prot_H-elongata_contig176708.4630.1|Name=mRNA_H-elongata_contig176708.4630.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=325bp MPLFSRPIRPQHGLLEIKVCRHVAARSRLPKLPTEKALAATQRGPRDIIKback to top mRNA from alignment at H-elongata_contig176708:156..1130+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig176708.4630.1 ID=mRNA_H-elongata_contig176708.4630.1|Name=mRNA_H-elongata_contig176708.4630.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=975bp|location=Sequence derived from alignment at H-elongata_contig176708:156..1130+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig176708:156..1130+ >mRNA_H-elongata_contig176708.4630.1 ID=mRNA_H-elongata_contig176708.4630.1|Name=mRNA_H-elongata_contig176708.4630.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1950bp|location=Sequence derived from alignment at H-elongata_contig176708:156..1130+ (Himanthalia elongata Himel1 dioecious)back to top |