mRNA_H-elongata_contig17658.4622.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig17658.4622.1 vs. uniprot
Match: D7FYM6_ECTSI (Thioredoxin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYM6_ECTSI) HSP 1 Score: 262 bits (670), Expect = 4.660e-84 Identity = 131/198 (66.16%), Postives = 162/198 (81.82%), Query Frame = 2
Query: 2 MVLSYGVLRCYFISSPRLTTKQTWTGFSQEVEVLGLAAAMVLSKCRKIATFDELLERVLFVGKATVSSLLYFVGAAYMVSYLAIWAALSLLVQRPRFPHPREVSSLTGGEFQSMVRSST-QAPGPPVAWLVMFHADWCSASSNIQPMFGALARRFSGKNRRFALVDVVSYPDVAENLNINTGGTSKQLPTLALFVGGR 592
+VL+YG++R Y +S+PRLT++ TWTGFSQE E++GLA A ++SK RK+ATFDE L R +GKA V+ LL+FVG +MV YL +W A SL+V PRF P EVS+L GEFQSMVRSS+ QAPG VAWLVMFHADWCS+S N+QPMFGALARR++ KNRRFA+VD+V++P+ AE+LNINT GTSKQLPTLALF GR
Sbjct: 26 LVLNYGIVRWY-MSAPRLTSQATWTGFSQETEIIGLATATLVSKYRKMATFDEFLARFFVIGKAAVAVLLFFVGIPHMVWYLILWTACSLVVPYPRFVLPSEVSTLNPGEFQSMVRSSSAQAPGERVAWLVMFHADWCSSSHNLQPMFGALARRYADKNRRFAVVDIVAHPETAEDLNINTAGTSKQLPTLALFASGR 222
BLAST of mRNA_H-elongata_contig17658.4622.1 vs. uniprot
Match: A0A6H5JZG0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZG0_9PHAE) HSP 1 Score: 136 bits (343), Expect = 3.420e-36 Identity = 74/124 (59.68%), Postives = 88/124 (70.97%), Query Frame = 2
Query: 92 VEVLGLAAAMVLSKCRKIATFDELLERVLFVGKATVSSLLYFVGAAYMVSYLAIWAALSLLVQRPRFPHPREVSSLTGGEFQSMVRSST-QAPGPPVAWLVMFHADWCSASSNIQPMFGALARR 460
+EV+GLA A ++SK RK+ATFDE L R +GKA V+ LL+FVG +MV YL +W EVS+L GEFQSMVRSS+ QAPG VAWLVMFHADWCS+S N+QPMFGALARR
Sbjct: 1 MEVIGLATATLVSKYRKMATFDEFLARFFVIGKAAVAVLLFFVGIPHMVWYLILWT---------------EVSTLNPGEFQSMVRSSSAQAPGDRVAWLVMFHADWCSSSRNLQPMFGALARR 109
BLAST of mRNA_H-elongata_contig17658.4622.1 vs. uniprot
Match: A0A6V1S3B1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1S3B1_HETAK) HSP 1 Score: 112 bits (279), Expect = 1.370e-25 Identity = 69/201 (34.33%), Postives = 108/201 (53.73%), Query Frame = 2
Query: 2 MVLSYGVLRCYFISSPRLTTKQTWTGFSQEVEVLGLAAAMVLSKCRKIATFDELLERVLFVGKATVSSLLYFVGAAYMVSYLAIWAALSLLVQRPRFPHPREVSSLTGGEFQSMVRSSTQAPGPPVAWLVMFHADWCSASSNIQPMFGALARRFSGKNR-----RFALVDVVSYPDVAENLNINTGGTSKQLPTLALFVGG 589
++L Y ++R + L +T GF++EVE++ LA ++ K + AT D+ L++V GK +LL+++ + YL I A ++L V P + S+ G FQ +V++ P A LVMFH DWC + +P+F +A RF G RFA VD+V +P++A+ ++ GTSKQLPT LF G
Sbjct: 19 LLLIYPLVRFTYGIPDSLRDTRTMLGFTKEVEMILLAFVALIVKFARAATLDQYLDKVFLFGKMANGALLFYINRPFATGYLVI-AFVTLAVLNPPKILNLSIESMGMGTFQEVVKNCRD---PRRAALVMFHCDWCKDCTLTEPIFSRIADRFRGGGXXXGPYRFAKVDLVRFPELADEYAVDVSGTSKQLPTFILFYKG 215
BLAST of mRNA_H-elongata_contig17658.4622.1 vs. uniprot
Match: W4H8H0_9STRA (Thioredoxin domain-containing protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H8H0_9STRA) HSP 1 Score: 109 bits (273), Expect = 5.820e-25 Identity = 65/200 (32.50%), Postives = 99/200 (49.50%), Query Frame = 2
Query: 2 MVLSYGVLRCYFISSPRLTTKQTWTGFSQEVEVLGLAAAMVLSKCRKIATFDELLERVLFVGKATVSSLLYFVGAAYMVSYLAIWAALSLLVQRPRFPHPREVSSLTGGEFQSMVRSSTQAPGPPVAWLVMFHADWCSASSNIQPMFGALARRFSGKNRRFALVDVVSYPDVAENLNINTGGTS-KQLPTLALFVGGR*T 598
++ SYGV R S+ +L K+ W G ++E ++L + +L RK AT D ++ K ++ L Y + Y + L+V P++ P + ++LTG F VR+ + WLV HADWC MF L+ RF +DV +YPD+A+ LNI+ T+ KQLP+L LF GG+ T
Sbjct: 19 LISSYGVARITRTSA-KLAEKEEWLGLTREQQILFVLVGSILFNYRKKATVDGVIAMAFLYAKGSIGGLFYLLDPTLFACYAIAAVLIFLVVPYPKYAGPHKSTTLTGAFFNEHVRNGSSG-----TWLVYLHADWCDECLYHDAMFADLSLAHGTDAVRFGRLDVEAYPDIAKELNIDMNATTTKQLPSLVLFEGGKET 212
BLAST of mRNA_H-elongata_contig17658.4622.1 vs. uniprot
Match: A0A7S2RZA8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RZA8_9STRA) HSP 1 Score: 99.8 bits (247), Expect = 6.810e-21 Identity = 58/199 (29.15%), Postives = 99/199 (49.75%), Query Frame = 2
Query: 11 SYGVLRCYF----ISSPRLTTKQTWT-GFSQEVEVLGLAAAMVLSKCRKIATFDELLERVLFVGKATVSSLLYFVGAAYMVSYLAIWAALSLLVQRPRFPHPREVSSLTGGEFQSMVRSSTQAPGPPVAWLVMFHADWCSASSNIQPMFGALARRFSGKNRRFALVDVVSYPDVAENLNINTGGTSKQLPTLALFVGGR 592
+Y LR Y+ +S + +W ++E E+ A ++ K RK +T +++ E+V K T LL+F MV Y +L++ P+F E L F + VR+ + WLV+FHADWC + ++P+ L+ R S + R++ +D+V +P++ + NI+ +KQLPT+ F GR
Sbjct: 34 AYLPLRMYWLDSEVSQAFMQEPGSWVESLTREQEIACFGAFVLFLKTRKTSTLEQVCEKVFLFSKLTTLVLLFFASKTTMVGYFLAVTVAFVLLRPPKFFGDEEFEYLHASSFDAQVRNP-KGDMRKTTWLVVFHADWCEKCTTLEPLLAKLSLRHSDEGRKWGKIDLVHFPELGKEFNIDMTPYTKQLPTVIEFFKGR 231
BLAST of mRNA_H-elongata_contig17658.4622.1 vs. uniprot
Match: A0A673A5L4_9TELE (Thioredoxin related transmembrane protein 2 n=3 Tax=Sphaeramia orbicularis TaxID=375764 RepID=A0A673A5L4_9TELE) HSP 1 Score: 82.8 bits (203), Expect = 1.310e-14 Identity = 45/169 (26.63%), Postives = 87/169 (51.48%), Query Frame = 2
Query: 86 QEVEVLGLAAAMVLSKCRKIATFDELLERVLFVGKATVSSLLYFVGAAYMVSYLAIWAALSLLVQRPRFPHPREVSSLTGGEFQSMVRSSTQAPGPPVAWLVMFHADWCSASSNIQPMFGALARRFSGKNRRFALVDVVSYPDVAENLNINTGGTSKQLPTLALFVGGR 592
+E+E+L +A+V+ K R+ T D+ + + K L + + + YLA+ A + + P + P ++ + ++ ++ + W+V F+A+W S + P+F L+ +++ RFA VD+ Y D+++ ++T +KQLPTLAL+ GGR
Sbjct: 64 RELEILMFLSAIVMMKNRRAITLDQHIGNLFLFSKVANVILFFRLDVRLGILYLALCVAFVMTCKPPIYMGPEYITYFSDKTIDEELQRDSR-----ITWIVEFYANWSSDCQSFAPVFADLSLKYNCAGLRFAKVDIGRYGDISQRYGVSTSPLAKQLPTLALYQGGR 227
BLAST of mRNA_H-elongata_contig17658.4622.1 vs. uniprot
Match: A0A4U5UE82_COLLU (Thioredoxin-related transmembrane protein 2-B n=7 Tax=Eupercaria TaxID=1489922 RepID=A0A4U5UE82_COLLU) HSP 1 Score: 73.9 bits (180), Expect = 1.710e-11 Identity = 44/169 (26.04%), Postives = 85/169 (50.30%), Query Frame = 2
Query: 86 QEVEVLGLAAAMVLSKCRKIATFDELLERVLFVGKATVSSLLYFVGAAYMVSYLAIWAALSLLVQRPRFPHPREVSSLTGGEFQSMVRSSTQAPGPPVAWLVMFHADWCSASSNIQPMFGALARRFSGKNRRFALVDVVSYPDVAENLNINTGGTSKQLPTLALFVGGR 592
+EVE+L +A+V+ K R+ T ++ + + K L + + + YL++ A + + P + P + + ++ ++ V W+V F+A+W S + P+F L+ +++ RF VD+ Y +V++ ++T +KQLPT+ALF GGR
Sbjct: 64 REVEILMFLSAIVMMKNRRAITLEQHIGNLFLFSKVANVILFFRLDIRLGILYLSLCVAFVMTCKPPLYMGPEYIKYFSDKTIDEELQRDSR-----VTWIVEFYANWSSDCQSFAPVFADLSLKYNCAGLRFGKVDIGRYGEVSQT--VSTSPLAKQLPTVALFQGGR 225
BLAST of mRNA_H-elongata_contig17658.4622.1 vs. uniprot
Match: UPI00103FA335 (thioredoxin-related transmembrane protein 2 homolog n=1 Tax=Ostrinia furnacalis TaxID=93504 RepID=UPI00103FA335) HSP 1 Score: 71.2 bits (173), Expect = 9.930e-11 Identity = 52/171 (30.41%), Postives = 75/171 (43.86%), Query Frame = 2
Query: 83 SQEVEVLGLAAAMVLSKCRKIA--TFDELLERVLFVGKATVSSLLYFVGAAYMVSYLAIWAALSLLVQRPRFPHPREVSSLTGGEFQSMVRSSTQAPGPPVAWLVMFHADWCSASSNIQPMFGALARRFSGKNRRFALVDVVSYPDVAENLNINTGGTSKQLPTLALFVGG 589
S+E E+L +V+ + RK T L K L + Y + Y A+ SLL+ P + P + G QS+ + G W+V +A W A N P+F L+ +S N +F VD+ YPD A + G TS+QLPT+ LFV G
Sbjct: 48 SRETEILFFLIIVVMLRTRKAGSVTMVNYLSSSFVYTKIANLILWLYADIRYGLPYGALIILTSLLLPEPTYMGPEHIIYFRG--TQSLDEELKRNKG--TTWVVCLYAAWHPACVNFAPVFAELSASYSLDNFKFGKVDIGRYPDAAAKYRVQDGPTSRQLPTVLLFVDG 214
BLAST of mRNA_H-elongata_contig17658.4622.1 vs. uniprot
Match: A0A7R9WE99_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WE99_9STRA) HSP 1 Score: 68.9 bits (167), Expect = 1.450e-10 Identity = 47/132 (35.61%), Postives = 66/132 (50.00%), Query Frame = 2
Query: 227 AYMVSYLAIWAALSLLVQRPR---FPHPREVSSLTGGEFQSMVRSST--QAPGPPVAW-----LVMFHADWCSASSNIQPMFGALARRFSGKNRRFALVDVVSYPDVAENLNINTGGTSKQLPTLALFVGGR 592
A + LA +AA+SLLV PR + V+ L F + VR +T PG A +V+FH W P+ L++ + RRF VD+ YP+V L I+T +SKQLPT+ LF GG+
Sbjct: 22 AAFAALLAAYAAISLLVPPPRCYGYVEGGRVTPLNPRSFAAEVRKATTDSQPGRKTASCLTDDVVLFHVPWSDDCRYFYPILADLSKEHLKEERRFWSVDLNVYPEVGAELRIDTSTSSKQLPTVVLFHGGK 153
BLAST of mRNA_H-elongata_contig17658.4622.1 vs. uniprot
Match: UPI001864A035 (thioredoxin-related transmembrane protein 2-B-like n=1 Tax=Megalops cyprinoides TaxID=118141 RepID=UPI001864A035) HSP 1 Score: 67.8 bits (164), Expect = 2.320e-9 Identity = 40/169 (23.67%), Postives = 79/169 (46.75%), Query Frame = 2
Query: 86 QEVEVLGLAAAMVLSKCRKIATFDELLERVLFVGKATVSSLLYFVGAAYMVSYLAIWAALSLLVQRPRFPHPREVSSLTGGEFQSMVRSSTQAPGPPVAWLVMFHADWCSASSNIQPMFGALARRFSGKNRRFALVDVVSYPDVAENLNINTGGTSKQLPTLALFVGGR 592
+EVE+L +A+V+ K R+ T ++ + + K + L + + + YL + + + P + P + + + + ++ V W+V F A+W + ++ L+ +++ +F VDV Y +V ++T +KQLPTLALF GG+
Sbjct: 64 REVEILMFLSAIVMMKNRRAITVEQHVGNIFLFSKVANAILFFRLDIRMGLLYLTMCIVFLMTCKPPLYMGPEYIKYFSDKTIEEELERDSR-----VTWIVEFFANWSPECQSFASVYADLSLKYNCAGLKFGKVDVGRYGEVTNKYKVSTSPLTKQLPTLALFQGGK 227 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17658.4622.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig17658.4622.1 >prot_H-elongata_contig17658.4622.1 ID=prot_H-elongata_contig17658.4622.1|Name=mRNA_H-elongata_contig17658.4622.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=198bp MVLSYGVLRCYFISSPRLTTKQTWTGFSQEVEVLGLAAAMVLSKCRKIATback to top mRNA from alignment at H-elongata_contig17658:1639..4072- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig17658.4622.1 ID=mRNA_H-elongata_contig17658.4622.1|Name=mRNA_H-elongata_contig17658.4622.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2434bp|location=Sequence derived from alignment at H-elongata_contig17658:1639..4072- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig17658:1639..4072- >mRNA_H-elongata_contig17658.4622.1 ID=mRNA_H-elongata_contig17658.4622.1|Name=mRNA_H-elongata_contig17658.4622.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1188bp|location=Sequence derived from alignment at H-elongata_contig17658:1639..4072- (Himanthalia elongata Himel1 dioecious)back to top |