mRNA_H-elongata_contig17640.4613.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig17640.4613.1 vs. uniprot
Match: A0A6H5L9S0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9S0_9PHAE) HSP 1 Score: 194 bits (493), Expect = 1.170e-57 Identity = 96/127 (75.59%), Postives = 108/127 (85.04%), Query Frame = 1
Query: 67 FFTIDVDPRRVRFAHSKIKPVFSGCGRTIEQTLKEIREGETKPSDLPVITVVVGPDDP-----ESGEACLFSLNNRRLFVFKACREEGLLGNDGLIRVRARALKPHERDRYTLDRCSLQAKFLFAPK 432
F +DVDPR VR+AHSKIKP FSGCGRTIEQTL EIREG+T+PSDLP+ITV++ P DP + + C FSLNNRRLFVFKACREEGLLG GL+RVRARALK HER+RYT+DRCSLQAKFLFAPK
Sbjct: 20 FSMLDVDPRHVRYAHSKIKPHFSGCGRTIEQTLGEIREGKTRPSDLPMITVLLRPPDPVVDGEQQQQQCFFSLNNRRLFVFKACREEGLLGPSGLVRVRARALKAHERERYTVDRCSLQAKFLFAPK 146
BLAST of mRNA_H-elongata_contig17640.4613.1 vs. uniprot
Match: A0A835ZB41_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB41_9STRA) HSP 1 Score: 150 bits (380), Expect = 2.140e-43 Identity = 76/139 (54.68%), Postives = 95/139 (68.35%), Query Frame = 1
Query: 4 GKGKKXXXXXXXXXXXXXAAEFFTIDVDPRRVRFAHSKIKPVFSGCGRTIEQTLKEIREGETKPSDLPVITVVVGPDDPESGEACLFSLNNRRLFVFKACREEGLLGNDGLIRVRARALKPHERDRYTLDRCSLQAKFL 420
G G K A F +D+DP R+RFAHSKI+PVFSGCGR+++ TL+EIR G TK +DLPVITV+ GP E G + FSLNNRRL+VFKAC+ EGLLG +G ++VR R K HE +RYTL+RCS A +
Sbjct: 23 GAGSKGKGSSSTGKPRLSATTFVHMDIDPDRIRFAHSKIRPVFSGCGRSLQTTLEEIRSGATKITDLPVITVIEGPS--EHGSSWYFSLNNRRLWVFKACKREGLLGGEGTVKVRVRGPKDHELERYTLERCSNTATLM 159
BLAST of mRNA_H-elongata_contig17640.4613.1 vs. uniprot
Match: A9UYH0_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9UYH0_MONBE) HSP 1 Score: 152 bits (383), Expect = 2.150e-43 Identity = 75/126 (59.52%), Postives = 96/126 (76.19%), Query Frame = 1
Query: 58 AAEFFTIDVDPRRVRFAHSKIKPVFSGCGRTIEQTLKEIREGETKPSDLPVITVVVGPDDPESGEACLFSLNNRRLFVFKACREEGLLGNDGLIRVRARALKPHERDRYTLDRCSLQAKFLFAPKA 435
A+ F T DVDPR++RFAH++IKP+FSGCGRT+ QTL+E+R+G TK +D+P +TV+V PDD + A +SLNNRRL+VFK REEG+L I VR R +KPHE RYT D C+LQAKFLF +A
Sbjct: 57 ASGFTTADVDPRQIRFAHARIKPMFSGCGRTLAQTLEELRDGTTKVTDIPTVTVMVRPDDDPTLPAWYYSLNNRRLYVFKQLREEGILDT---IPVRVRGMKPHEVARYTPDNCALQAKFLFKERA 179
BLAST of mRNA_H-elongata_contig17640.4613.1 vs. uniprot
Match: A0A7S2A608_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A608_TRICV) HSP 1 Score: 138 bits (347), Expect = 2.220e-38 Identity = 69/117 (58.97%), Postives = 88/117 (75.21%), Query Frame = 1
Query: 73 TIDVDPRRVRFAHSKIKPVFSGCGRTIEQTLKEIREGETKPSDLPVITVVVGPDDPESGEACLFSLNNRRLFVFKACREEGLLGNDGLIRVRARALKPH-ERDRYTLDRCSLQAKFL 420
TI VDPRR+RF +S+I+P FSGCGR+++ TL+ IR GE P DLP I V+VGP+ + FSLNNRRL+V K CREEGLLG D LIRVR R K ER+RY+++RC+L+AKF+
Sbjct: 11 TIRVDPRRIRFQYSRIRPHFSGCGRSVQGTLESIRNGEIGPGDLPPIQVLVGPEAEDGSGRWYFSLNNRRLWVLKRCREEGLLGGDNLIRVRVRDPKSAAERERYSVERCALEAKFI 127
BLAST of mRNA_H-elongata_contig17640.4613.1 vs. uniprot
Match: B8LD96_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LD96_THAPS) HSP 1 Score: 119 bits (298), Expect = 1.690e-30 Identity = 62/119 (52.10%), Postives = 83/119 (69.75%), Query Frame = 1
Query: 76 IDVDPRRVRFAHSKIKPVFSGCGRTIEQTLKEIREGETKPSDLPVITVVVGPDDPESGEACLFSLNNRRLFVFKACREEGLLGN---DGLIRVRARALKPH-ERDRYTLDRCSLQAKFL 420
I +DP RVRF HS+I+P FSGCGR++ +TL EIR G+ KP+DLP I V++GP+ + FSLNNRRL+V K C +EGLL N + I VR R K E +RY++D C+L+AKF+
Sbjct: 41 IHIDPSRVRFQHSRIRPHFSGCGRSVVETLDEIRRGDLKPADLPPIQVLIGPEGNDGLGPWYFSLNNRRLWVLKQCYKEGLLNNSTYNNTIPVRVRLPKSDAELERYSVDNCALEAKFM 159
BLAST of mRNA_H-elongata_contig17640.4613.1 vs. uniprot
Match: A0A7S4SSK4_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4SSK4_9STRA) HSP 1 Score: 114 bits (286), Expect = 1.080e-28 Identity = 56/119 (47.06%), Postives = 80/119 (67.23%), Query Frame = 1
Query: 82 VDPRRVRFAHSKIKPVFSGCGRTIEQTLKEIREGETKPSDLPVITVVVGPDDPESGEACL---FSLNNRRLFVFKACREEGLLGNDGLIRVRARALKPH---ERDRYTLDRCSLQAKFL 420
VDP+ +RF HS+I+P FSGCGR++ T+++IR G+ P+DLP I V+VG + FSLNNRRL++FK CREEGLL + + R++ R P E RYT++ C+L+AKF+
Sbjct: 29 VDPKLIRFQHSRIRPYFSGCGRSVSDTMEQIRNGDVSPNDLPTIQVIVGQXXXXXXXXXMPWYFSLNNRRLWIFKKCREEGLLQHPHVNRIKVRIKVPKSQTELQRYTVENCALEAKFI 147
BLAST of mRNA_H-elongata_contig17640.4613.1 vs. uniprot
Match: K0SIP0_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SIP0_THAOC) HSP 1 Score: 115 bits (287), Expect = 9.370e-28 Identity = 63/119 (52.94%), Postives = 79/119 (66.39%), Query Frame = 1
Query: 76 IDVDPRRVRFAHSKIKPVFSGCGRTIEQTLKEIREGETKPSDLPVITVVVGPDDPESGEACLFSLNNRRLFVFKACREEGLLGND---GLIRVRARALKPH-ERDRYTLDRCSLQAKFL 420
I V P RVR+ HS+I+P FSGCGR++ TL EIR G +PS LP I V+VGPD + FSLNNRRL+V K C EGLL N+ +I+VR R K ER+RY++ CSL AKF+
Sbjct: 172 IQVCPTRVRYQHSRIRPHFSGCGRSVVGTLDEIRGGRLEPSALPPIQVLVGPDGDDGMGPWYFSLNNRRLWVLKQCHREGLLDNERYGNMIQVRVRVPKSDSERERYSVKNCSLDAKFM 290
BLAST of mRNA_H-elongata_contig17640.4613.1 vs. uniprot
Match: A0A1E7FEU0_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FEU0_9STRA) HSP 1 Score: 105 bits (263), Expect = 4.920e-25 Identity = 67/146 (45.89%), Postives = 86/146 (58.90%), Query Frame = 1
Query: 58 AAEFFTID------VDPRRVRFAHSKIKPVFSGCGRTIEQTLKEIREGETKPSDLPVITVVVGP-DDPESGEACLFSLNNRRLFVFKACREEGLLGNDG-LIRVRARALKPH-ERDRYTLDRCSLQAKFLFA-PKASNSSNSSLAA 465
AAE ID VDP R RF HSKI+PVFSGCGR + Q L++I+ G+T DLP I V+VG D E G FSLNNRRL++ K R G L G ++VR R K ER+RY++ C+L AK + P+ S++AA
Sbjct: 20 AAEAEAIDSNGFILVDPARCRFQHSKIRPVFSGCGRDVTQVLEDIKSGKTDLQDLPPIQVLVGDYSDDEDGSIWYFSLNNRRLWILKQLRAGGYLEKQGNKVKVRVRRPKSQSERERYSIANCALNAKIMVEKPRKKKEKTSAVAA 165
BLAST of mRNA_H-elongata_contig17640.4613.1 vs. uniprot
Match: A0A7S3HIR4_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HIR4_9STRA) HSP 1 Score: 98.6 bits (244), Expect = 3.570e-22 Identity = 56/126 (44.44%), Postives = 78/126 (61.90%), Query Frame = 1
Query: 73 TIDVDPRRVRFAHSKIKPVFSGCGRTIEQTLKEIREGETKPSDLPVITVVVGPDDPESGEACLFSLNNRRLFVFKACREEGLLGNDGLIRVRARALKPHERDRYTLDRCSLQAKFLFAPKASNSSN 450
TI++DP +RF H++I+P F+GCG+ IE T+KEI +G T DLP+ITV+ GE FSLNNRRL+ K + GLL + AL E+ RYT RC+LQAK + +A++SS+
Sbjct: 19 TIEIDPSVIRFTHARIRPYFTGCGKKIEDTIKEITDGVTTVEDLPLITVI-----ENDGE--YFSLNNRRLYTIKHVQSLGLLKKPTITAFIKPALD-REKTRYTAQRCALQAKIMLEREAADSSD 136
BLAST of mRNA_H-elongata_contig17640.4613.1 vs. uniprot
Match: A0A6B2LQW6_9EUKA (Uncharacterized protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LQW6_9EUKA) HSP 1 Score: 91.3 bits (225), Expect = 8.050e-21 Identity = 51/108 (47.22%), Postives = 69/108 (63.89%), Query Frame = 1
Query: 97 VRFAHSKIKPVFSGCGRTIEQTLKEIREGETKPSDLPVITVVVGPDDPESGEACLFSLNNRRLFVFKACREEGLLGNDGLIRVRARALKPHERDRYTLDRCSLQAKFL 420
+RF HSKIKP+FS GRT+E TL EI EG+ KP +LP I V + + FS+NNRRL+VFK CR+ GLL R+R +++R+T +RC+L AKF+
Sbjct: 2 IRFTHSKIKPIFSD-GRTVEGTLSEISEGKLKPENLPKIVV------HKQDDKTYFSMNNRRLWVFKECRKRGLLEKVP-ERIRPMPTNKRQKNRFTTERCALNAKFM 101 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17640.4613.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig17640.4613.1 >prot_H-elongata_contig17640.4613.1 ID=prot_H-elongata_contig17640.4613.1|Name=mRNA_H-elongata_contig17640.4613.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=157bp MGKGKKGKKGGSSGSGGGGAAEFFTIDVDPRRVRFAHSKIKPVFSGCGRTback to top mRNA from alignment at H-elongata_contig17640:1210..2190- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig17640.4613.1 ID=mRNA_H-elongata_contig17640.4613.1|Name=mRNA_H-elongata_contig17640.4613.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=981bp|location=Sequence derived from alignment at H-elongata_contig17640:1210..2190- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig17640:1210..2190- >mRNA_H-elongata_contig17640.4613.1 ID=mRNA_H-elongata_contig17640.4613.1|Name=mRNA_H-elongata_contig17640.4613.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=942bp|location=Sequence derived from alignment at H-elongata_contig17640:1210..2190- (Himanthalia elongata Himel1 dioecious)back to top |