mRNA_H-elongata_contig17640.4613.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17640.4613.1
Unique NamemRNA_H-elongata_contig17640.4613.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig17640.4613.1 vs. uniprot
Match: A0A6H5L9S0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9S0_9PHAE)

HSP 1 Score: 194 bits (493), Expect = 1.170e-57
Identity = 96/127 (75.59%), Postives = 108/127 (85.04%), Query Frame = 1
Query:   67 FFTIDVDPRRVRFAHSKIKPVFSGCGRTIEQTLKEIREGETKPSDLPVITVVVGPDDP-----ESGEACLFSLNNRRLFVFKACREEGLLGNDGLIRVRARALKPHERDRYTLDRCSLQAKFLFAPK 432
            F  +DVDPR VR+AHSKIKP FSGCGRTIEQTL EIREG+T+PSDLP+ITV++ P DP     +  + C FSLNNRRLFVFKACREEGLLG  GL+RVRARALK HER+RYT+DRCSLQAKFLFAPK
Sbjct:   20 FSMLDVDPRHVRYAHSKIKPHFSGCGRTIEQTLGEIREGKTRPSDLPMITVLLRPPDPVVDGEQQQQQCFFSLNNRRLFVFKACREEGLLGPSGLVRVRARALKAHERERYTVDRCSLQAKFLFAPK 146          
BLAST of mRNA_H-elongata_contig17640.4613.1 vs. uniprot
Match: A0A835ZB41_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB41_9STRA)

HSP 1 Score: 150 bits (380), Expect = 2.140e-43
Identity = 76/139 (54.68%), Postives = 95/139 (68.35%), Query Frame = 1
Query:    4 GKGKKXXXXXXXXXXXXXAAEFFTIDVDPRRVRFAHSKIKPVFSGCGRTIEQTLKEIREGETKPSDLPVITVVVGPDDPESGEACLFSLNNRRLFVFKACREEGLLGNDGLIRVRARALKPHERDRYTLDRCSLQAKFL 420
            G G K             A  F  +D+DP R+RFAHSKI+PVFSGCGR+++ TL+EIR G TK +DLPVITV+ GP   E G +  FSLNNRRL+VFKAC+ EGLLG +G ++VR R  K HE +RYTL+RCS  A  +
Sbjct:   23 GAGSKGKGSSSTGKPRLSATTFVHMDIDPDRIRFAHSKIRPVFSGCGRSLQTTLEEIRSGATKITDLPVITVIEGPS--EHGSSWYFSLNNRRLWVFKACKREGLLGGEGTVKVRVRGPKDHELERYTLERCSNTATLM 159          
BLAST of mRNA_H-elongata_contig17640.4613.1 vs. uniprot
Match: A9UYH0_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9UYH0_MONBE)

HSP 1 Score: 152 bits (383), Expect = 2.150e-43
Identity = 75/126 (59.52%), Postives = 96/126 (76.19%), Query Frame = 1
Query:   58 AAEFFTIDVDPRRVRFAHSKIKPVFSGCGRTIEQTLKEIREGETKPSDLPVITVVVGPDDPESGEACLFSLNNRRLFVFKACREEGLLGNDGLIRVRARALKPHERDRYTLDRCSLQAKFLFAPKA 435
            A+ F T DVDPR++RFAH++IKP+FSGCGRT+ QTL+E+R+G TK +D+P +TV+V PDD  +  A  +SLNNRRL+VFK  REEG+L     I VR R +KPHE  RYT D C+LQAKFLF  +A
Sbjct:   57 ASGFTTADVDPRQIRFAHARIKPMFSGCGRTLAQTLEELRDGTTKVTDIPTVTVMVRPDDDPTLPAWYYSLNNRRLYVFKQLREEGILDT---IPVRVRGMKPHEVARYTPDNCALQAKFLFKERA 179          
BLAST of mRNA_H-elongata_contig17640.4613.1 vs. uniprot
Match: A0A7S2A608_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A608_TRICV)

HSP 1 Score: 138 bits (347), Expect = 2.220e-38
Identity = 69/117 (58.97%), Postives = 88/117 (75.21%), Query Frame = 1
Query:   73 TIDVDPRRVRFAHSKIKPVFSGCGRTIEQTLKEIREGETKPSDLPVITVVVGPDDPESGEACLFSLNNRRLFVFKACREEGLLGNDGLIRVRARALKPH-ERDRYTLDRCSLQAKFL 420
            TI VDPRR+RF +S+I+P FSGCGR+++ TL+ IR GE  P DLP I V+VGP+  +      FSLNNRRL+V K CREEGLLG D LIRVR R  K   ER+RY+++RC+L+AKF+
Sbjct:   11 TIRVDPRRIRFQYSRIRPHFSGCGRSVQGTLESIRNGEIGPGDLPPIQVLVGPEAEDGSGRWYFSLNNRRLWVLKRCREEGLLGGDNLIRVRVRDPKSAAERERYSVERCALEAKFI 127          
BLAST of mRNA_H-elongata_contig17640.4613.1 vs. uniprot
Match: B8LD96_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LD96_THAPS)

HSP 1 Score: 119 bits (298), Expect = 1.690e-30
Identity = 62/119 (52.10%), Postives = 83/119 (69.75%), Query Frame = 1
Query:   76 IDVDPRRVRFAHSKIKPVFSGCGRTIEQTLKEIREGETKPSDLPVITVVVGPDDPESGEACLFSLNNRRLFVFKACREEGLLGN---DGLIRVRARALKPH-ERDRYTLDRCSLQAKFL 420
            I +DP RVRF HS+I+P FSGCGR++ +TL EIR G+ KP+DLP I V++GP+  +      FSLNNRRL+V K C +EGLL N   +  I VR R  K   E +RY++D C+L+AKF+
Sbjct:   41 IHIDPSRVRFQHSRIRPHFSGCGRSVVETLDEIRRGDLKPADLPPIQVLIGPEGNDGLGPWYFSLNNRRLWVLKQCYKEGLLNNSTYNNTIPVRVRLPKSDAELERYSVDNCALEAKFM 159          
BLAST of mRNA_H-elongata_contig17640.4613.1 vs. uniprot
Match: A0A7S4SSK4_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4SSK4_9STRA)

HSP 1 Score: 114 bits (286), Expect = 1.080e-28
Identity = 56/119 (47.06%), Postives = 80/119 (67.23%), Query Frame = 1
Query:   82 VDPRRVRFAHSKIKPVFSGCGRTIEQTLKEIREGETKPSDLPVITVVVGPDDPESGEACL---FSLNNRRLFVFKACREEGLLGNDGLIRVRARALKPH---ERDRYTLDRCSLQAKFL 420
            VDP+ +RF HS+I+P FSGCGR++  T+++IR G+  P+DLP I V+VG          +   FSLNNRRL++FK CREEGLL +  + R++ R   P    E  RYT++ C+L+AKF+
Sbjct:   29 VDPKLIRFQHSRIRPYFSGCGRSVSDTMEQIRNGDVSPNDLPTIQVIVGQXXXXXXXXXMPWYFSLNNRRLWIFKKCREEGLLQHPHVNRIKVRIKVPKSQTELQRYTVENCALEAKFI 147          
BLAST of mRNA_H-elongata_contig17640.4613.1 vs. uniprot
Match: K0SIP0_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SIP0_THAOC)

HSP 1 Score: 115 bits (287), Expect = 9.370e-28
Identity = 63/119 (52.94%), Postives = 79/119 (66.39%), Query Frame = 1
Query:   76 IDVDPRRVRFAHSKIKPVFSGCGRTIEQTLKEIREGETKPSDLPVITVVVGPDDPESGEACLFSLNNRRLFVFKACREEGLLGND---GLIRVRARALKPH-ERDRYTLDRCSLQAKFL 420
            I V P RVR+ HS+I+P FSGCGR++  TL EIR G  +PS LP I V+VGPD  +      FSLNNRRL+V K C  EGLL N+    +I+VR R  K   ER+RY++  CSL AKF+
Sbjct:  172 IQVCPTRVRYQHSRIRPHFSGCGRSVVGTLDEIRGGRLEPSALPPIQVLVGPDGDDGMGPWYFSLNNRRLWVLKQCHREGLLDNERYGNMIQVRVRVPKSDSERERYSVKNCSLDAKFM 290          
BLAST of mRNA_H-elongata_contig17640.4613.1 vs. uniprot
Match: A0A1E7FEU0_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FEU0_9STRA)

HSP 1 Score: 105 bits (263), Expect = 4.920e-25
Identity = 67/146 (45.89%), Postives = 86/146 (58.90%), Query Frame = 1
Query:   58 AAEFFTID------VDPRRVRFAHSKIKPVFSGCGRTIEQTLKEIREGETKPSDLPVITVVVGP-DDPESGEACLFSLNNRRLFVFKACREEGLLGNDG-LIRVRARALKPH-ERDRYTLDRCSLQAKFLFA-PKASNSSNSSLAA 465
            AAE   ID      VDP R RF HSKI+PVFSGCGR + Q L++I+ G+T   DLP I V+VG   D E G    FSLNNRRL++ K  R  G L   G  ++VR R  K   ER+RY++  C+L AK +   P+      S++AA
Sbjct:   20 AAEAEAIDSNGFILVDPARCRFQHSKIRPVFSGCGRDVTQVLEDIKSGKTDLQDLPPIQVLVGDYSDDEDGSIWYFSLNNRRLWILKQLRAGGYLEKQGNKVKVRVRRPKSQSERERYSIANCALNAKIMVEKPRKKKEKTSAVAA 165          
BLAST of mRNA_H-elongata_contig17640.4613.1 vs. uniprot
Match: A0A7S3HIR4_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HIR4_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 3.570e-22
Identity = 56/126 (44.44%), Postives = 78/126 (61.90%), Query Frame = 1
Query:   73 TIDVDPRRVRFAHSKIKPVFSGCGRTIEQTLKEIREGETKPSDLPVITVVVGPDDPESGEACLFSLNNRRLFVFKACREEGLLGNDGLIRVRARALKPHERDRYTLDRCSLQAKFLFAPKASNSSN 450
            TI++DP  +RF H++I+P F+GCG+ IE T+KEI +G T   DLP+ITV+        GE   FSLNNRRL+  K  +  GLL    +      AL   E+ RYT  RC+LQAK +   +A++SS+
Sbjct:   19 TIEIDPSVIRFTHARIRPYFTGCGKKIEDTIKEITDGVTTVEDLPLITVI-----ENDGE--YFSLNNRRLYTIKHVQSLGLLKKPTITAFIKPALD-REKTRYTAQRCALQAKIMLEREAADSSD 136          
BLAST of mRNA_H-elongata_contig17640.4613.1 vs. uniprot
Match: A0A6B2LQW6_9EUKA (Uncharacterized protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LQW6_9EUKA)

HSP 1 Score: 91.3 bits (225), Expect = 8.050e-21
Identity = 51/108 (47.22%), Postives = 69/108 (63.89%), Query Frame = 1
Query:   97 VRFAHSKIKPVFSGCGRTIEQTLKEIREGETKPSDLPVITVVVGPDDPESGEACLFSLNNRRLFVFKACREEGLLGNDGLIRVRARALKPHERDRYTLDRCSLQAKFL 420
            +RF HSKIKP+FS  GRT+E TL EI EG+ KP +LP I V       +  +   FS+NNRRL+VFK CR+ GLL      R+R       +++R+T +RC+L AKF+
Sbjct:    2 IRFTHSKIKPIFSD-GRTVEGTLSEISEGKLKPENLPKIVV------HKQDDKTYFSMNNRRLWVFKECRKRGLLEKVP-ERIRPMPTNKRQKNRFTTERCALNAKFM 101          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17640.4613.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L9S0_9PHAE1.170e-5775.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZB41_9STRA2.140e-4354.68Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A9UYH0_MONBE2.150e-4359.52Predicted protein n=1 Tax=Monosiga brevicollis Tax... [more]
A0A7S2A608_TRICV2.220e-3858.97Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
B8LD96_THAPS1.690e-3052.10Predicted protein n=1 Tax=Thalassiosira pseudonana... [more]
A0A7S4SSK4_9STRA1.080e-2847.06Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
K0SIP0_THAOC9.370e-2852.94Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
A0A1E7FEU0_9STRA4.920e-2545.89Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
A0A7S3HIR4_9STRA3.570e-2244.44Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A6B2LQW6_9EUKA8.050e-2147.22Uncharacterized protein n=1 Tax=Arcella intermedia... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17640contigH-elongata_contig17640:1210..2190 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score152.9
Seed ortholog evalue1.2e-34
Seed eggNOG ortholog81824.XP_001745489.1
EggNOG OGs2BYVT@1,2SB3T@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-07_006350.2
Exons2
Model size471
Cds size471
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930021.1384075-CDS-H-elongata_contig17640:1209..13831622930021.1384075-CDS-H-elongata_contig17640:1209..1383Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17640 1210..1383 -
1691679249.2937455-CDS-H-elongata_contig17640:1209..13831691679249.2937455-CDS-H-elongata_contig17640:1209..1383Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17640 1210..1383 -
1622930021.1539865-CDS-H-elongata_contig17640:1893..21901622930021.1539865-CDS-H-elongata_contig17640:1893..2190Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17640 1894..2190 -
1691679249.3061757-CDS-H-elongata_contig17640:1893..21901691679249.3061757-CDS-H-elongata_contig17640:1893..2190Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17640 1894..2190 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17640.4613.1prot_H-elongata_contig17640.4613.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17640 1210..2190 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17640.4613.1

>prot_H-elongata_contig17640.4613.1 ID=prot_H-elongata_contig17640.4613.1|Name=mRNA_H-elongata_contig17640.4613.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=157bp
MGKGKKGKKGGSSGSGGGGAAEFFTIDVDPRRVRFAHSKIKPVFSGCGRT
IEQTLKEIREGETKPSDLPVITVVVGPDDPESGEACLFSLNNRRLFVFKA
CREEGLLGNDGLIRVRARALKPHERDRYTLDRCSLQAKFLFAPKASNSSN
SSLAAGG
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mRNA from alignment at H-elongata_contig17640:1210..2190-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17640.4613.1 ID=mRNA_H-elongata_contig17640.4613.1|Name=mRNA_H-elongata_contig17640.4613.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=981bp|location=Sequence derived from alignment at H-elongata_contig17640:1210..2190- (Himanthalia elongata Himel1 dioecious)
ATGGGAAAAGGAAAAAAAGGAAAGAAAGGAGGCTCCTCCGGAAGTGGCGG AGGAGGCGCGGCTGAGTTCTTCACGATTGACGTCGACCCGAGACGCGTGC GCTTCGCGCACAGCAAGATAAAGCCTGTCTTCTCCGGTTGCGGCCGCACC ATCGAGCAGACGCTAAAGGAGATACGGGAGGGCGAGACAAAGCCCTCAGA CCTTCCTGTGATCACCGTCGTGGTTGGCCCGGATGATCCTGAGAGCGGTG AAGCGTGTTTATTTTCACTAAACAACCGCAGACTTTTCGTTTTCAAGGTA CTTAACTTGCACTGTACAATGGTATTATATAATCCTAGCTCATAATATCC CGCAGTTCATCGTATTACTTACTATCTCCTCTCCTAGAGTTTACTCTCTA GGCTCTGATTTGGTGTCCCCACGTGATGGCAGTGTAAGTGTAAGGGATAA TAATGGGATCCCCCATATTATGATACACTTGACCCGACGAACTTACTTTT GGAGAACACGATCAATCACATGTTAAGATTTTGTGGTCGAAGGTAGTAAT GTACACATTCGAACCGGACGATAGTTGGTCCCCTGGACTGCACCTCTGAC GGTGCGACGAAGGTAAAGATGTTTGAAGGGTTGGAATGAGTTCATTTTGT TTTTACGAATATTAGCCTAAAGCTAAAGAAAAACCTATAAATTCCCGTTT CCGAGACGTAAGGCCAAAATGGGGCCACCCTCGATCGGTTGCTAAAAGGA AATTTCCGCTCGCTTTTTCATATGCTTGTACGTTGTTTGCTTGTTGTGGG CGATCAGGCATGTCGAGAAGAAGGGTTGCTGGGGAATGACGGTTTGATCC GCGTGCGGGCACGAGCCCTGAAGCCGCACGAGCGCGATCGTTACACGCTG GACCGATGTTCACTTCAAGCCAAGTTCCTCTTCGCTCCGAAAGCGTCCAA TTCGAGCAACTCCTCCCTTGCTGCCGGAGGT
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Coding sequence (CDS) from alignment at H-elongata_contig17640:1210..2190-

>mRNA_H-elongata_contig17640.4613.1 ID=mRNA_H-elongata_contig17640.4613.1|Name=mRNA_H-elongata_contig17640.4613.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=942bp|location=Sequence derived from alignment at H-elongata_contig17640:1210..2190- (Himanthalia elongata Himel1 dioecious)
ATGGGAAAAGGAAAAAAAGGAAAGAAAGGAGGCTCCTCCGGAAGTGGCGG
AGGAGGCGCGGCTGAGTTCTTCACGATTGACGTCGACCCGAGACGCGTGC
GCTTCGCGCACAGCAAGATAAAGCCTGTCTTCTCCGGTTGCGGCCGCACC
ATCGAGCAGACGCTAAAGGAGATACGGGAGGGCGAGACAAAGCCCTCAGA
CCTTCCTGTGATCACCGTCGTGGTTGGCCCGGATGATCCTGAGAGCGGTG
AAGCGTGTTTATTTTCACTAAACAACCGCAGACTTTTCGTTTTCAAGATG
GGAAAAGGAAAAAAAGGAAAGAAAGGAGGCTCCTCCGGAAGTGGCGGAGG
AGGCGCGGCTGAGTTCTTCACGATTGACGTCGACCCGAGACGCGTGCGCT
TCGCGCACAGCAAGATAAAGCCTGTCTTCTCCGGTTGCGGCCGCACCATC
GAGCAGACGCTAAAGGAGATACGGGAGGGCGAGACAAAGCCCTCAGACCT
TCCTGTGATCACCGTCGTGGTTGGCCCGGATGATCCTGAGAGCGGTGAAG
CGTGTTTATTTTCACTAAACAACCGCAGACTTTTCGTTTTCAAGGCATGT
CGAGAAGAAGGGTTGCTGGGGAATGACGGTTTGATCCGCGTGCGGGCACG
AGCCCTGAAGCCGCACGAGCGCGATCGTTACACGCTGGACCGATGTTCAC
TTCAAGCCAAGTTCCTCTTCGCTCCGAAAGCGTCCAATTCGAGCAACTCC
TCCCTTGCTGCCGGAGGTGCATGTCGAGAAGAAGGGTTGCTGGGGAATGA
CGGTTTGATCCGCGTGCGGGCACGAGCCCTGAAGCCGCACGAGCGCGATC
GTTACACGCTGGACCGATGTTCACTTCAAGCCAAGTTCCTCTTCGCTCCG
AAAGCGTCCAATTCGAGCAACTCCTCCCTTGCTGCCGGAGGT
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