mRNA_H-elongata_contig176305.4609.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig176305.4609.1
Unique NamemRNA_H-elongata_contig176305.4609.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig176305.4609.1 vs. uniprot
Match: D7FQ22_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ22_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 2.460e-23
Identity = 42/67 (62.69%), Postives = 51/67 (76.12%), Query Frame = 1
Query:   10 KIRFRCAEGHEWLSTPSNIAYKKTWCPTCADVSRSQRKRLNVAEMQHTASQFGGEFLSTEYLGAAVK 210
            KI FRC +GHEWL++PSN+ YK TWCP CA +   +RK+L +A+M  TA QFGG FLS EY GAAVK
Sbjct:  147 KIAFRCGDGHEWLTSPSNLVYKNTWCPKCAALRSVERKKLTLADMHQTARQFGGVFLSPEYKGAAVK 213          
BLAST of mRNA_H-elongata_contig176305.4609.1 vs. uniprot
Match: A0A6H5JCH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCH6_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 4.000e-23
Identity = 43/70 (61.43%), Postives = 52/70 (74.29%), Query Frame = 1
Query:    1 MHGKIRFRCAEGHEWLSTPSNIAYKKTWCPTCADVSRSQRKRLNVAEMQHTASQFGGEFLSTEYLGAAVK 210
            M  KI FRC +GHEWL++PSN+ YK TWCP CA +   +RK+L +A+M  TA QFGG FLS EY GAAVK
Sbjct:  321 MDEKIAFRCGDGHEWLTSPSNLVYKNTWCPKCAALRSVERKKLTLADMHQTARQFGGVFLSPEYKGAAVK 390          
BLAST of mRNA_H-elongata_contig176305.4609.1 vs. uniprot
Match: A0A1I1ZXD7_9DELT (Uncharacterized protein n=1 Tax=Nannocystis exedens TaxID=54 RepID=A0A1I1ZXD7_9DELT)

HSP 1 Score: 60.5 bits (145), Expect = 1.050e-9
Identity = 28/62 (45.16%), Postives = 38/62 (61.29%), Query Frame = 1
Query:   10 KIRFRCAEGHEWLSTPSNIAYKKTWCPTCADVSRSQRKRLNVAEMQHTASQFGGEFLSTEYL 195
            K+R+RCA+GHEWL    +I   + WCP CAD       RL +AEMQ  A+  GG  +S +Y+
Sbjct:   37 KLRWRCAQGHEWLRASGDILDDR-WCPRCADT------RLGIAEMQRMAAAHGGSCISKKYV 91          
BLAST of mRNA_H-elongata_contig176305.4609.1 vs. uniprot
Match: A0A2A9KJR9_9BURK (Putative zinc ribbon protein n=2 Tax=Collimonas sp. PA-H2 TaxID=1881062 RepID=A0A2A9KJR9_9BURK)

HSP 1 Score: 61.2 bits (147), Expect = 4.060e-9
Identity = 27/77 (35.06%), Postives = 48/77 (62.34%), Query Frame = 1
Query:   13 IRFRCAEGHEWLSTPSNIAYKKTWCPTCADVSRSQRKRLNVAEMQHTASQFGGEFLSTEYLGAAVKVRARSGCIFVW 243
            ++++CA+GH W+++PS++    +WCP C  + R  +K + +A+ +  A + GG+ LSTEYL  + K+  R     VW
Sbjct:   86 LKWKCADGHAWMASPSSVKNGNSWCPKC--LGRLPKKEM-LAQYRRIARERGGKLLSTEYLSNSDKLTWRCKYGHVW 159          
BLAST of mRNA_H-elongata_contig176305.4609.1 vs. uniprot
Match: A0A843YWN8_9BURK (Uncharacterized protein n=1 Tax=Glaciimonas soli TaxID=2590999 RepID=A0A843YWN8_9BURK)

HSP 1 Score: 60.1 bits (144), Expect = 8.610e-9
Identity = 29/64 (45.31%), Postives = 39/64 (60.94%), Query Frame = 1
Query:   10 KIRFRCAEGHEWLSTPSNIAYKKTWCPTCADVSRSQRKRLNVAEMQHTASQFGGEFLSTEYLGA 201
            ++R+RCA+GHEW S P N+   K WC  C D     +KRL +A MQ  A++  G  LST Y+ A
Sbjct:  179 RLRWRCAQGHEWESNPLNVV--KHWCAQCRD----DKKRLGIARMQAIAAERDGLCLSTVYVNA 236          
BLAST of mRNA_H-elongata_contig176305.4609.1 vs. uniprot
Match: A0A6S7A7B5_9BURK (Uncharacterized protein n=2 Tax=Achromobacter kerstersii TaxID=1353890 RepID=A0A6S7A7B5_9BURK)

HSP 1 Score: 59.7 bits (143), Expect = 1.430e-8
Identity = 28/68 (41.18%), Postives = 39/68 (57.35%), Query Frame = 1
Query:   10 KIRFRCAEGHEWLSTPSNIAYKKTWCPTCADVSRSQRKRLNVAEMQHTASQFGGEFLSTEYLGAAVKV 213
            + RFRC EGHEWL+T   I    +WC  CA+V+    KRL +    H A + GG+ LS+ Y+    K+
Sbjct:  231 RYRFRCTEGHEWLTTGGKILLG-SWCGVCANVN----KRLGIEAAHHAARERGGQCLSSSYVNTTKKL 293          
BLAST of mRNA_H-elongata_contig176305.4609.1 vs. uniprot
Match: A0A7S4V335_9DINO (Hypothetical protein (Fragment) n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4V335_9DINO)

HSP 1 Score: 59.3 bits (142), Expect = 1.900e-8
Identity = 29/61 (47.54%), Postives = 36/61 (59.02%), Query Frame = 1
Query:   10 KIRFRCAEGHEWLSTPSNIAYKKTWCPTCADVSRSQRKRLNVAEMQHTASQFGGEFLSTEY 192
            ++R+RCAEGHEW +T SNI  K TWCPTCA        RL +   +  A   GG  LS +Y
Sbjct:   33 RLRWRCAEGHEWEATLSNIKNKGTWCPTCA----VDGSRLTIEIARDAARARGGLCLSKQY 89          
BLAST of mRNA_H-elongata_contig176305.4609.1 vs. uniprot
Match: A0A7S4QLW3_9DINO (Hypothetical protein n=3 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4QLW3_9DINO)

HSP 1 Score: 59.3 bits (142), Expect = 2.050e-8
Identity = 29/61 (47.54%), Postives = 36/61 (59.02%), Query Frame = 1
Query:   10 KIRFRCAEGHEWLSTPSNIAYKKTWCPTCADVSRSQRKRLNVAEMQHTASQFGGEFLSTEY 192
            ++R+RCAEGHEW +T SNI  K TWCPTCA        RL +   +  A   GG  LS +Y
Sbjct:  110 RLRWRCAEGHEWEATLSNIKNKGTWCPTCA----VDGSRLTIEIARDAARARGGLCLSKQY 166          
BLAST of mRNA_H-elongata_contig176305.4609.1 vs. uniprot
Match: A0A2V5UAS9_9BACT (Uncharacterized protein n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A2V5UAS9_9BACT)

HSP 1 Score: 58.5 bits (140), Expect = 3.430e-8
Identity = 29/81 (35.80%), Postives = 42/81 (51.85%), Query Frame = 1
Query:    1 MHGKIRFRCAEGHEWLSTPSNIAYKKTWCPTCADVSRSQRKRLNVAEMQHTASQFGGEFLSTEYLGAAVKVRARSGCIFVW 243
            +  ++R+RCAEGHEW S  S +     WCP C      ++  L++ E+Q TA   GGE L+  YL    K+  R     +W
Sbjct:  211 VKSRLRWRCAEGHEWESQAS-VIIGGHWCPKCEQFRLGRKYALSLEEIQKTAKGRGGECLADNYLNTREKLIWRCAKGHLW 290          
BLAST of mRNA_H-elongata_contig176305.4609.1 vs. uniprot
Match: A0A2B0CZ13_BACTU (Uncharacterized protein n=3 Tax=Bacillus cereus group TaxID=86661 RepID=A0A2B0CZ13_BACTU)

HSP 1 Score: 56.6 bits (135), Expect = 1.830e-7
Identity = 29/79 (36.71%), Postives = 44/79 (55.70%), Query Frame = 1
Query:   10 KIRFRCAEGHEWLSTPSNIAYKKTWCPTCADVSRS-----------QRKRLNVAEMQHTASQFGGEFLSTEYLGAAVKV 213
            K+ +RCAEGH +     NI  +K WC  C  ++R+           ++ +  + +MQ+ A Q+GGE LSTEYLG   K+
Sbjct:  342 KLTWRCAEGHVFERNLKNIR-RKRWCSECKKMNRNIEPIEVENTSPKKLKFTIEDMQNFAKQYGGECLSTEYLGQRNKL 419          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig176305.4609.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQ22_ECTSI2.460e-2362.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JCH6_9PHAE4.000e-2361.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1I1ZXD7_9DELT1.050e-945.16Uncharacterized protein n=1 Tax=Nannocystis exeden... [more]
A0A2A9KJR9_9BURK4.060e-935.06Putative zinc ribbon protein n=2 Tax=Collimonas sp... [more]
A0A843YWN8_9BURK8.610e-945.31Uncharacterized protein n=1 Tax=Glaciimonas soli T... [more]
A0A6S7A7B5_9BURK1.430e-841.18Uncharacterized protein n=2 Tax=Achromobacter kers... [more]
A0A7S4V335_9DINO1.900e-847.54Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
A0A7S4QLW3_9DINO2.050e-847.54Hypothetical protein n=3 Tax=Alexandrium monilatum... [more]
A0A2V5UAS9_9BACT3.430e-835.80Uncharacterized protein n=1 Tax=Verrucomicrobia ba... [more]
A0A2B0CZ13_BACTU1.830e-736.71Uncharacterized protein n=3 Tax=Bacillus cereus gr... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig176305contigH-elongata_contig176305:391..1057 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score60.1
Seed ortholog evalue5.7e-07
Seed eggNOG ortholog391038.Bphy_7330
EggNOG free text desc.Hypothethical protein
EggNOG OGs1K7QY@119060,1RGTF@1224,2DC1Q@1,2VY4F@28216,2ZCH9@2
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_007770.1
COG Functional cat.S
Best tax levelBurkholderiaceae
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size246
Cds size246
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930020.8089337-CDS-H-elongata_contig176305:390..4681622930020.8089337-CDS-H-elongata_contig176305:390..468Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig176305 391..468 +
1691679249.1105855-CDS-H-elongata_contig176305:390..4681691679249.1105855-CDS-H-elongata_contig176305:390..468Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig176305 391..468 +
1622930020.8244364-CDS-H-elongata_contig176305:889..10571622930020.8244364-CDS-H-elongata_contig176305:889..1057Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig176305 890..1057 +
1691679249.1326141-CDS-H-elongata_contig176305:889..10571691679249.1326141-CDS-H-elongata_contig176305:889..1057Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig176305 890..1057 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig176305.4609.1prot_H-elongata_contig176305.4609.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig176305 391..1057 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig176305.4609.1

>prot_H-elongata_contig176305.4609.1 ID=prot_H-elongata_contig176305.4609.1|Name=mRNA_H-elongata_contig176305.4609.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=82bp
MHGKIRFRCAEGHEWLSTPSNIAYKKTWCPTCADVSRSQRKRLNVAEMQH
TASQFGGEFLSTEYLGAAVKVRARSGCIFVW*
back to top

mRNA from alignment at H-elongata_contig176305:391..1057+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig176305.4609.1 ID=mRNA_H-elongata_contig176305.4609.1|Name=mRNA_H-elongata_contig176305.4609.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=667bp|location=Sequence derived from alignment at H-elongata_contig176305:391..1057+ (Himanthalia elongata Himel1 dioecious)
ATGCACGGCAAGATCCGCTTCCGGTGCGCGGAGGGGCACGAGTGGCTCAG CACGCCGTCCAACATCGCCTATAAGAAGGTGTCCGCACTCTCACTAAAAT GTTTATTTTCGATTTTTTCGTGTTGTCCAGCATCACCCATTAGAAGGTTG CCCGTACTCTCACTGAATTATCTACTTTCGATTTTTTTCACGCCTAGTGG TAGGCGTTCTGTCGCTGGTGGAATTACACACAACAGGCAGGTTAGCTGAG GTAGCCAATCATTATAACCAGGGCGAAGCATTTCTCCGCCATAAACGTAG CTTAGCGGCACCTCGCGGAGTCGGGCCCGTTCTTTGGAGGCTCGGCGCGA AGTAGCGCGATCGCTGATCTCTTACGGACAAACCTCGCCTTCTCTCTCTT ACGGACAAATGGATTGCGCTTTGGCGATGCGTTTTGACGATGCGCATGTT GTTTTTTTCTTCACTTGTTTGTTTTGGGGGGCGAGGGCGGCGTGGACAGA CGTGGTGTCCGACCTGCGCGGACGTGAGTAGATCCCAGCGGAAGAGGCTT AACGTGGCAGAAATGCAGCACACCGCCAGTCAGTTCGGTGGCGAGTTCTT GAGCACCGAATACCTTGGGGCGGCCGTCAAGGTACGTGCGAGGTCAGGTT GCATTTTTGTGTGGTGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig176305:391..1057+

>mRNA_H-elongata_contig176305.4609.1 ID=mRNA_H-elongata_contig176305.4609.1|Name=mRNA_H-elongata_contig176305.4609.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=492bp|location=Sequence derived from alignment at H-elongata_contig176305:391..1057+ (Himanthalia elongata Himel1 dioecious)
ATGCACGGCAAGATCCGCTTCCGGTGCGCGGAGGGGCACGAGTGGCTCAG
CACGCCGTCCAACATCGCCTATAAGAAGATGCACGGCAAGATCCGCTTCC
GGTGCGCGGAGGGGCACGAGTGGCTCAGCACGCCGTCCAACATCGCCTAT
AAGAAGACGTGGTGTCCGACCTGCGCGGACGTGAGTAGATCCCAGCGGAA
GAGGCTTAACGTGGCAGAAATGCAGCACACCGCCAGTCAGTTCGGTGGCG
AGTTCTTGAGCACCGAATACCTTGGGGCGGCCGTCAAGGTACGTGCGAGG
TCAGGTTGCATTTTTGTGTGGTGAACGTGGTGTCCGACCTGCGCGGACGT
GAGTAGATCCCAGCGGAAGAGGCTTAACGTGGCAGAAATGCAGCACACCG
CCAGTCAGTTCGGTGGCGAGTTCTTGAGCACCGAATACCTTGGGGCGGCC
GTCAAGGTACGTGCGAGGTCAGGTTGCATTTTTGTGTGGTGA
back to top