mRNA_H-elongata_contig176305.4609.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig176305.4609.1 vs. uniprot
Match: D7FQ22_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ22_ECTSI) HSP 1 Score: 99.8 bits (247), Expect = 2.460e-23 Identity = 42/67 (62.69%), Postives = 51/67 (76.12%), Query Frame = 1
Query: 10 KIRFRCAEGHEWLSTPSNIAYKKTWCPTCADVSRSQRKRLNVAEMQHTASQFGGEFLSTEYLGAAVK 210
KI FRC +GHEWL++PSN+ YK TWCP CA + +RK+L +A+M TA QFGG FLS EY GAAVK
Sbjct: 147 KIAFRCGDGHEWLTSPSNLVYKNTWCPKCAALRSVERKKLTLADMHQTARQFGGVFLSPEYKGAAVK 213
BLAST of mRNA_H-elongata_contig176305.4609.1 vs. uniprot
Match: A0A6H5JCH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCH6_9PHAE) HSP 1 Score: 100 bits (250), Expect = 4.000e-23 Identity = 43/70 (61.43%), Postives = 52/70 (74.29%), Query Frame = 1
Query: 1 MHGKIRFRCAEGHEWLSTPSNIAYKKTWCPTCADVSRSQRKRLNVAEMQHTASQFGGEFLSTEYLGAAVK 210
M KI FRC +GHEWL++PSN+ YK TWCP CA + +RK+L +A+M TA QFGG FLS EY GAAVK
Sbjct: 321 MDEKIAFRCGDGHEWLTSPSNLVYKNTWCPKCAALRSVERKKLTLADMHQTARQFGGVFLSPEYKGAAVK 390
BLAST of mRNA_H-elongata_contig176305.4609.1 vs. uniprot
Match: A0A1I1ZXD7_9DELT (Uncharacterized protein n=1 Tax=Nannocystis exedens TaxID=54 RepID=A0A1I1ZXD7_9DELT) HSP 1 Score: 60.5 bits (145), Expect = 1.050e-9 Identity = 28/62 (45.16%), Postives = 38/62 (61.29%), Query Frame = 1
Query: 10 KIRFRCAEGHEWLSTPSNIAYKKTWCPTCADVSRSQRKRLNVAEMQHTASQFGGEFLSTEYL 195
K+R+RCA+GHEWL +I + WCP CAD RL +AEMQ A+ GG +S +Y+
Sbjct: 37 KLRWRCAQGHEWLRASGDILDDR-WCPRCADT------RLGIAEMQRMAAAHGGSCISKKYV 91
BLAST of mRNA_H-elongata_contig176305.4609.1 vs. uniprot
Match: A0A2A9KJR9_9BURK (Putative zinc ribbon protein n=2 Tax=Collimonas sp. PA-H2 TaxID=1881062 RepID=A0A2A9KJR9_9BURK) HSP 1 Score: 61.2 bits (147), Expect = 4.060e-9 Identity = 27/77 (35.06%), Postives = 48/77 (62.34%), Query Frame = 1
Query: 13 IRFRCAEGHEWLSTPSNIAYKKTWCPTCADVSRSQRKRLNVAEMQHTASQFGGEFLSTEYLGAAVKVRARSGCIFVW 243
++++CA+GH W+++PS++ +WCP C + R +K + +A+ + A + GG+ LSTEYL + K+ R VW
Sbjct: 86 LKWKCADGHAWMASPSSVKNGNSWCPKC--LGRLPKKEM-LAQYRRIARERGGKLLSTEYLSNSDKLTWRCKYGHVW 159
BLAST of mRNA_H-elongata_contig176305.4609.1 vs. uniprot
Match: A0A843YWN8_9BURK (Uncharacterized protein n=1 Tax=Glaciimonas soli TaxID=2590999 RepID=A0A843YWN8_9BURK) HSP 1 Score: 60.1 bits (144), Expect = 8.610e-9 Identity = 29/64 (45.31%), Postives = 39/64 (60.94%), Query Frame = 1
Query: 10 KIRFRCAEGHEWLSTPSNIAYKKTWCPTCADVSRSQRKRLNVAEMQHTASQFGGEFLSTEYLGA 201
++R+RCA+GHEW S P N+ K WC C D +KRL +A MQ A++ G LST Y+ A
Sbjct: 179 RLRWRCAQGHEWESNPLNVV--KHWCAQCRD----DKKRLGIARMQAIAAERDGLCLSTVYVNA 236
BLAST of mRNA_H-elongata_contig176305.4609.1 vs. uniprot
Match: A0A6S7A7B5_9BURK (Uncharacterized protein n=2 Tax=Achromobacter kerstersii TaxID=1353890 RepID=A0A6S7A7B5_9BURK) HSP 1 Score: 59.7 bits (143), Expect = 1.430e-8 Identity = 28/68 (41.18%), Postives = 39/68 (57.35%), Query Frame = 1
Query: 10 KIRFRCAEGHEWLSTPSNIAYKKTWCPTCADVSRSQRKRLNVAEMQHTASQFGGEFLSTEYLGAAVKV 213
+ RFRC EGHEWL+T I +WC CA+V+ KRL + H A + GG+ LS+ Y+ K+
Sbjct: 231 RYRFRCTEGHEWLTTGGKILLG-SWCGVCANVN----KRLGIEAAHHAARERGGQCLSSSYVNTTKKL 293
BLAST of mRNA_H-elongata_contig176305.4609.1 vs. uniprot
Match: A0A7S4V335_9DINO (Hypothetical protein (Fragment) n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4V335_9DINO) HSP 1 Score: 59.3 bits (142), Expect = 1.900e-8 Identity = 29/61 (47.54%), Postives = 36/61 (59.02%), Query Frame = 1
Query: 10 KIRFRCAEGHEWLSTPSNIAYKKTWCPTCADVSRSQRKRLNVAEMQHTASQFGGEFLSTEY 192
++R+RCAEGHEW +T SNI K TWCPTCA RL + + A GG LS +Y
Sbjct: 33 RLRWRCAEGHEWEATLSNIKNKGTWCPTCA----VDGSRLTIEIARDAARARGGLCLSKQY 89
BLAST of mRNA_H-elongata_contig176305.4609.1 vs. uniprot
Match: A0A7S4QLW3_9DINO (Hypothetical protein n=3 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4QLW3_9DINO) HSP 1 Score: 59.3 bits (142), Expect = 2.050e-8 Identity = 29/61 (47.54%), Postives = 36/61 (59.02%), Query Frame = 1
Query: 10 KIRFRCAEGHEWLSTPSNIAYKKTWCPTCADVSRSQRKRLNVAEMQHTASQFGGEFLSTEY 192
++R+RCAEGHEW +T SNI K TWCPTCA RL + + A GG LS +Y
Sbjct: 110 RLRWRCAEGHEWEATLSNIKNKGTWCPTCA----VDGSRLTIEIARDAARARGGLCLSKQY 166
BLAST of mRNA_H-elongata_contig176305.4609.1 vs. uniprot
Match: A0A2V5UAS9_9BACT (Uncharacterized protein n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A2V5UAS9_9BACT) HSP 1 Score: 58.5 bits (140), Expect = 3.430e-8 Identity = 29/81 (35.80%), Postives = 42/81 (51.85%), Query Frame = 1
Query: 1 MHGKIRFRCAEGHEWLSTPSNIAYKKTWCPTCADVSRSQRKRLNVAEMQHTASQFGGEFLSTEYLGAAVKVRARSGCIFVW 243
+ ++R+RCAEGHEW S S + WCP C ++ L++ E+Q TA GGE L+ YL K+ R +W
Sbjct: 211 VKSRLRWRCAEGHEWESQAS-VIIGGHWCPKCEQFRLGRKYALSLEEIQKTAKGRGGECLADNYLNTREKLIWRCAKGHLW 290
BLAST of mRNA_H-elongata_contig176305.4609.1 vs. uniprot
Match: A0A2B0CZ13_BACTU (Uncharacterized protein n=3 Tax=Bacillus cereus group TaxID=86661 RepID=A0A2B0CZ13_BACTU) HSP 1 Score: 56.6 bits (135), Expect = 1.830e-7 Identity = 29/79 (36.71%), Postives = 44/79 (55.70%), Query Frame = 1
Query: 10 KIRFRCAEGHEWLSTPSNIAYKKTWCPTCADVSRS-----------QRKRLNVAEMQHTASQFGGEFLSTEYLGAAVKV 213
K+ +RCAEGH + NI +K WC C ++R+ ++ + + +MQ+ A Q+GGE LSTEYLG K+
Sbjct: 342 KLTWRCAEGHVFERNLKNIR-RKRWCSECKKMNRNIEPIEVENTSPKKLKFTIEDMQNFAKQYGGECLSTEYLGQRNKL 419 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig176305.4609.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig176305.4609.1 >prot_H-elongata_contig176305.4609.1 ID=prot_H-elongata_contig176305.4609.1|Name=mRNA_H-elongata_contig176305.4609.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=82bp MHGKIRFRCAEGHEWLSTPSNIAYKKTWCPTCADVSRSQRKRLNVAEMQHback to top mRNA from alignment at H-elongata_contig176305:391..1057+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig176305.4609.1 ID=mRNA_H-elongata_contig176305.4609.1|Name=mRNA_H-elongata_contig176305.4609.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=667bp|location=Sequence derived from alignment at H-elongata_contig176305:391..1057+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig176305:391..1057+ >mRNA_H-elongata_contig176305.4609.1 ID=mRNA_H-elongata_contig176305.4609.1|Name=mRNA_H-elongata_contig176305.4609.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=492bp|location=Sequence derived from alignment at H-elongata_contig176305:391..1057+ (Himanthalia elongata Himel1 dioecious)back to top |