mRNA_H-elongata_contig176051.4598.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig176051.4598.1
Unique NamemRNA_H-elongata_contig176051.4598.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig176051.4598.1 vs. uniprot
Match: A0A6H5K6D4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6D4_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 2.000e-32
Identity = 63/78 (80.77%), Postives = 66/78 (84.62%), Query Frame = 1
Query:    1 RQP-GFARIVVTCEMLRSILGPEVYESDVAARVAVPGMCTGLAWTPTGGELLFIECTSMPGGGVVKLTGKLGAVRPSS 231
            RQP  F RIVVTCEMLR +LGPE+YES+VAARVA PG CTGLAWTPTGGELLFIECTSMPG G VKLTGKLG V   S
Sbjct:  753 RQPLAFPRIVVTCEMLRGVLGPELYESEVAARVATPGTCTGLAWTPTGGELLFIECTSMPGTGAVKLTGKLGEVMQES 830          
BLAST of mRNA_H-elongata_contig176051.4598.1 vs. uniprot
Match: D8LGC2_ECTSI (Lon protease homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGC2_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 6.930e-32
Identity = 62/78 (79.49%), Postives = 66/78 (84.62%), Query Frame = 1
Query:    1 RQP-GFARIVVTCEMLRSILGPEVYESDVAARVAVPGMCTGLAWTPTGGELLFIECTSMPGGGVVKLTGKLGAVRPSS 231
            R+P  F RIVVTCEMLR +LGPE+YES+VAARVA PG CTGLAWTPTGGELLFIECTSMPG G VKLTGKLG V   S
Sbjct:  811 RRPLAFPRIVVTCEMLRGVLGPELYESEVAARVATPGTCTGLAWTPTGGELLFIECTSMPGTGAVKLTGKLGEVMQES 888          
BLAST of mRNA_H-elongata_contig176051.4598.1 vs. uniprot
Match: A0A7V2SXP3_9DELT (Endopeptidase La n=1 Tax=Dissulfuribacter thermophilus TaxID=1156395 RepID=A0A7V2SXP3_9DELT)

HSP 1 Score: 85.5 bits (210), Expect = 3.370e-18
Identity = 44/71 (61.97%), Postives = 49/71 (69.01%), Query Frame = 1
Query:   19 RIVVTCEMLRSILGPEVYESDVAARVAVPGMCTGLAWTPTGGELLFIECTSMPGGGVVKLTGKLGAVRPSS 231
            +I VT   LR  LGP  YE +VA RV VPG+ TGLAWTPTGGE+LFIE T M G G + LTGKLG V   S
Sbjct:   96 KIEVTISNLREFLGPPKYELEVAERVRVPGVVTGLAWTPTGGEILFIEATKMEGSGKLILTGKLGDVMKES 166          
BLAST of mRNA_H-elongata_contig176051.4598.1 vs. uniprot
Match: A0A0R3DNE6_9BRAD (Lon protease n=5 Tax=Bradyrhizobium TaxID=374 RepID=A0A0R3DNE6_9BRAD)

HSP 1 Score: 86.3 bits (212), Expect = 5.700e-18
Identity = 41/71 (57.75%), Postives = 53/71 (74.65%), Query Frame = 1
Query:   19 RIVVTCEMLRSILGPEVYESDVAARVAVPGMCTGLAWTPTGGELLFIECTSMPGGGVVKLTGKLGAVRPSS 231
            R+V+    L+SILGP+ YE + A R +VPG+ TGLAWTP GGE+LF+E TS+PG G + LTG+LGAV   S
Sbjct:  579 RVVIAVADLQSILGPKRYEPETAMRTSVPGVATGLAWTPAGGEILFVEATSIPGRGNLILTGQLGAVMKES 649          
BLAST of mRNA_H-elongata_contig176051.4598.1 vs. uniprot
Match: A0A7C3KW54_9BACT (Endopeptidase La (Fragment) n=1 Tax=bacterium TaxID=1869227 RepID=A0A7C3KW54_9BACT)

HSP 1 Score: 85.1 bits (209), Expect = 1.440e-17
Identity = 40/76 (52.63%), Postives = 53/76 (69.74%), Query Frame = 1
Query:    4 QPGFARIVVTCEMLRSILGPEVYESDVAARVAVPGMCTGLAWTPTGGELLFIECTSMPGGGVVKLTGKLGAVRPSS 231
            + G  R V+T E +RSILGP  +ES++A R + PG+ TG+AWTP GG++LF+E T MPG G + LTG LG V   S
Sbjct:  530 EAGTERRVITAEGVRSILGPRRFESEIAMRTSTPGVATGMAWTPAGGDILFVEATRMPGKGNLILTGHLGDVMKES 605          
BLAST of mRNA_H-elongata_contig176051.4598.1 vs. uniprot
Match: UPI0018962689 (endopeptidase La n=4 Tax=Methylobacter TaxID=429 RepID=UPI0018962689)

HSP 1 Score: 84.7 bits (208), Expect = 1.980e-17
Identity = 40/72 (55.56%), Postives = 53/72 (73.61%), Query Frame = 1
Query:   16 ARIVVTCEMLRSILGPEVYESDVAARVAVPGMCTGLAWTPTGGELLFIECTSMPGGGVVKLTGKLGAVRPSS 231
            A+ V+  E + +ILGP  +ESDVA R++VPG+ TGLAWTP GG++LFIE T +PG G + LTG+LG V   S
Sbjct:  597 AQEVIDAEQIPAILGPRKFESDVAMRISVPGVATGLAWTPVGGDILFIEATRIPGTGKLILTGQLGEVMKES 668          
BLAST of mRNA_H-elongata_contig176051.4598.1 vs. uniprot
Match: A0A3M9XJ18_9HYPH (Lon protease n=2 Tax=Methylocystis hirsuta TaxID=369798 RepID=A0A3M9XJ18_9HYPH)

HSP 1 Score: 84.7 bits (208), Expect = 1.980e-17
Identity = 39/68 (57.35%), Postives = 51/68 (75.00%), Query Frame = 1
Query:   28 VTCEMLRSILGPEVYESDVAARVAVPGMCTGLAWTPTGGELLFIECTSMPGGGVVKLTGKLGAVRPSS 231
            +TCE L +ILGP  +ES++A R +VPG+ TGLAWTP GG++LFIE T +PG G + LTG+LG V   S
Sbjct:  589 ITCEHLAAILGPPQFESELAMRTSVPGVATGLAWTPVGGDILFIEATRIPGSGKLILTGQLGEVMRES 656          
BLAST of mRNA_H-elongata_contig176051.4598.1 vs. uniprot
Match: A0A2S6N1U7_9HYPH (Endopeptidase La (Fragment) n=1 Tax=Rhodoblastus sphagnicola TaxID=333368 RepID=A0A2S6N1U7_9HYPH)

HSP 1 Score: 82.4 bits (202), Expect = 2.170e-17
Identity = 40/74 (54.05%), Postives = 50/74 (67.57%), Query Frame = 1
Query:   10 GFARIVVTCEMLRSILGPEVYESDVAARVAVPGMCTGLAWTPTGGELLFIECTSMPGGGVVKLTGKLGAVRPSS 231
            G   + +TC+ L  ILG   YES+VA R +VPG+ TGLAWTP GG++LFIE T  PG G + LTG+LG V   S
Sbjct:   38 GVETVHITCDKLTKILGQPRYESEVAMRTSVPGVATGLAWTPVGGDILFIEATLTPGAGRLILTGQLGDVMRES 111          
BLAST of mRNA_H-elongata_contig176051.4598.1 vs. uniprot
Match: A0A1V5IK49_9EURY (Lon protease n=1 Tax=Euryarchaeota archaeon ADurb.BinA087 TaxID=1852879 RepID=A0A1V5IK49_9EURY)

HSP 1 Score: 84.0 bits (206), Expect = 3.700e-17
Identity = 44/69 (63.77%), Postives = 49/69 (71.01%), Query Frame = 1
Query:   25 VVTCEMLRSILGPEVYESDVAARVAVPGMCTGLAWTPTGGELLFIECTSMPGGGVVKLTGKLGAVRPSS 231
            VVT EML  ILG EV   + A  VAVPG+ TGLAWTP GGE+LFIE TSMPG G + LTG+LG V   S
Sbjct:  569 VVTAEMLDPILGREVVRQETARNVAVPGVVTGLAWTPVGGEILFIEGTSMPGKGNLTLTGQLGDVMKES 637          
BLAST of mRNA_H-elongata_contig176051.4598.1 vs. uniprot
Match: A0A7C9VNL8_9BRAD (Lon protease n=4 Tax=Bradyrhizobiaceae TaxID=41294 RepID=A0A7C9VNL8_9BRAD)

HSP 1 Score: 84.0 bits (206), Expect = 3.700e-17
Identity = 37/71 (52.11%), Postives = 54/71 (76.06%), Query Frame = 1
Query:   19 RIVVTCEMLRSILGPEVYESDVAARVAVPGMCTGLAWTPTGGELLFIECTSMPGGGVVKLTGKLGAVRPSS 231
            R+++T   L++ILGP+ +E ++A R +VPG+ TGLAWTP GG++LF+E TS+PG G + LTG+LG V   S
Sbjct:  579 RVIITVTDLQTILGPKRFEQEIAMRTSVPGVATGLAWTPAGGDILFVEATSIPGRGKLILTGQLGEVMKES 649          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig176051.4598.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K6D4_9PHAE2.000e-3280.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LGC2_ECTSI6.930e-3279.49Lon protease homolog n=1 Tax=Ectocarpus siliculosu... [more]
A0A7V2SXP3_9DELT3.370e-1861.97Endopeptidase La n=1 Tax=Dissulfuribacter thermoph... [more]
A0A0R3DNE6_9BRAD5.700e-1857.75Lon protease n=5 Tax=Bradyrhizobium TaxID=374 RepI... [more]
A0A7C3KW54_9BACT1.440e-1752.63Endopeptidase La (Fragment) n=1 Tax=bacterium TaxI... [more]
UPI00189626891.980e-1755.56endopeptidase La n=4 Tax=Methylobacter TaxID=429 R... [more]
A0A3M9XJ18_9HYPH1.980e-1757.35Lon protease n=2 Tax=Methylocystis hirsuta TaxID=3... [more]
A0A2S6N1U7_9HYPH2.170e-1754.05Endopeptidase La (Fragment) n=1 Tax=Rhodoblastus s... [more]
A0A1V5IK49_9EURY3.700e-1763.77Lon protease n=1 Tax=Euryarchaeota archaeon ADurb.... [more]
A0A7C9VNL8_9BRAD3.700e-1752.11Lon protease n=4 Tax=Bradyrhizobiaceae TaxID=41294... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig176051contigH-elongata_contig176051:516..746 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score127.1
Seed ortholog evalue3.5e-27
Seed eggNOG ortholog2880.D8LGC2
Preferred nameLONP2
KEGG koko:K01338,ko:K08675
KEGG Pathwayko04112,map04112
GOsGO:0000002,GO:0002020,GO:0003674,GO:0003824,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005777,GO:0005782,GO:0005829,GO:0006139,GO:0006259,GO:0006508,GO:0006605,GO:0006625,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006950,GO:0006996,GO:0007005,GO:0007031,GO:0007275,GO:0008104,GO:0008150,GO:0008152,GO:0008233,GO:0009266,GO:0009408,GO:0009628,GO:0009791,GO:0009894,GO:0009987,GO:0010033,GO:0010467,GO:0010565,GO:0014070,GO:0015031,GO:0015833,GO:0015919,GO:0016043,GO:0016485,GO:0016558,GO:0016560,GO:0016787,GO:0017038,GO:0019216,GO:0019217,GO:0019222,GO:0019538,GO:0019899,GO:0022622,GO:0031323,GO:0031329,GO:0031907,GO:0031974,GO:0031998,GO:0032042,GO:0032501,GO:0032502,GO:0033036,GO:0033365,GO:0034613,GO:0034641,GO:0040007,GO:0042221,GO:0042579,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043574,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0044743,GO:0045184,GO:0046320,GO:0046483,GO:0046907,GO:0048364,GO:0048527,GO:0048528,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0050994,GO:0051179,GO:0051234,GO:0051604,GO:0051641,GO:0051649,GO:0055085,GO:0062012,GO:0065002,GO:0065007,GO:0070013,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071806,GO:0071840,GO:0072594,GO:0072662,GO:0072663,GO:0080090,GO:0090304,GO:0090696,GO:0099402,GO:0140096,GO:1901360,GO:1901564
EggNOG free text desc.ATP-dependent serine protease that mediates the selective degradation of misfolded, unassembled or oxidatively damaged polypeptides as well as certain short-lived regulatory proteins in the mitochondrial matrix. May also have a chaperone function in the assembly of inner membrane protein complexes. Participates in the regulation of mitochondrial gene expression and in the maintenance of the integrity of the mitochondrial genome. Binds to mitochondrial
EggNOG OGsCOG0466@1,KOG2004@2759
EC3.4.21.53
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko03029
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-06_002640.1
Exons1
Model size231
Cds size231
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930019.9909317-CDS-H-elongata_contig176051:515..7461622930019.9909317-CDS-H-elongata_contig176051:515..746Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig176051 516..746 -
1691679248.7604856-CDS-H-elongata_contig176051:515..7461691679248.7604856-CDS-H-elongata_contig176051:515..746Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig176051 516..746 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig176051.4598.1prot_H-elongata_contig176051.4598.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig176051 516..746 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig176051.4598.1

>prot_H-elongata_contig176051.4598.1 ID=prot_H-elongata_contig176051.4598.1|Name=mRNA_H-elongata_contig176051.4598.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=77bp
RQPGFARIVVTCEMLRSILGPEVYESDVAARVAVPGMCTGLAWTPTGGEL
LFIECTSMPGGGVVKLTGKLGAVRPSS
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mRNA from alignment at H-elongata_contig176051:516..746-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig176051.4598.1 ID=mRNA_H-elongata_contig176051.4598.1|Name=mRNA_H-elongata_contig176051.4598.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=231bp|location=Sequence derived from alignment at H-elongata_contig176051:516..746- (Himanthalia elongata Himel1 dioecious)
CGGCAGCCCGGGTTCGCTCGAATAGTGGTGACCTGCGAGATGCTGAGGTC GATACTGGGGCCCGAGGTGTACGAGAGCGATGTGGCGGCGAGGGTGGCCG TTCCGGGGATGTGCACGGGTCTCGCTTGGACCCCGACGGGAGGCGAGCTG CTCTTCATCGAGTGCACCAGCATGCCCGGCGGCGGAGTCGTGAAGCTCAC GGGGAAGCTCGGGGCGGTGAGACCATCTAGC
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Coding sequence (CDS) from alignment at H-elongata_contig176051:516..746-

>mRNA_H-elongata_contig176051.4598.1 ID=mRNA_H-elongata_contig176051.4598.1|Name=mRNA_H-elongata_contig176051.4598.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=462bp|location=Sequence derived from alignment at H-elongata_contig176051:516..746- (Himanthalia elongata Himel1 dioecious)
CGGCAGCCCGGGTTCGCTCGAATAGTGGTGACCTGCGAGATGCTGAGGTC
GATACTGGGGCCCGAGGTGTACGAGAGCGATGTGGCGGCGAGGGTGGCCG
TTCCGGGGATGTGCACGGGTCTCGCTTGGACCCCGACGGGAGGCGAGCTG
CTCTTCATCGAGTGCACCAGCATGCCCGGCGGCGGAGTCGTGAAGCTCAC
GGGGAAGCTCGGGGCGGTGAGACCATCTAGCCGGCAGCCCGGGTTCGCTC
GAATAGTGGTGACCTGCGAGATGCTGAGGTCGATACTGGGGCCCGAGGTG
TACGAGAGCGATGTGGCGGCGAGGGTGGCCGTTCCGGGGATGTGCACGGG
TCTCGCTTGGACCCCGACGGGAGGCGAGCTGCTCTTCATCGAGTGCACCA
GCATGCCCGGCGGCGGAGTCGTGAAGCTCACGGGGAAGCTCGGGGCGGTG
AGACCATCTAGC
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