mRNA_H-elongata_contig176049.4597.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig176049.4597.1
Unique NamemRNA_H-elongata_contig176049.4597.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig176049.4597.1 vs. uniprot
Match: D7G3W1_ECTSI (MFS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3W1_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 1.010e-21
Identity = 47/59 (79.66%), Postives = 52/59 (88.14%), Query Frame = 1
Query:    7 RLEELGGSHVLCGLARLIMCLAEVPVFHTSGAMIRCMGVQGVIALAQTAYLIRFIYYSV 183
            RLEELGGSHVLCGLARLIMC+AEVP F+ SG +IR +GV+GVIAL Q AYL RFIYYSV
Sbjct:  316 RLEELGGSHVLCGLARLIMCIAEVPFFYLSGPLIRRVGVRGVIALTQVAYLTRFIYYSV 374          
BLAST of mRNA_H-elongata_contig176049.4597.1 vs. uniprot
Match: A0A6H5K6H4_9PHAE (MFS_1_like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6H4_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 1.080e-21
Identity = 47/59 (79.66%), Postives = 52/59 (88.14%), Query Frame = 1
Query:    7 RLEELGGSHVLCGLARLIMCLAEVPVFHTSGAMIRCMGVQGVIALAQTAYLIRFIYYSV 183
            RLEELGGSHVLCGLARLIMC+AEVP F+ SG +IR +GV+GVIAL Q AYL RFIYYSV
Sbjct:  371 RLEELGGSHVLCGLARLIMCIAEVPFFYLSGPLIRRVGVRGVIALTQVAYLTRFIYYSV 429          
BLAST of mRNA_H-elongata_contig176049.4597.1 vs. uniprot
Match: A0A6H5JEM5_9PHAE (MFS_1_like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEM5_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 2.160e-20
Identity = 50/77 (64.94%), Postives = 56/77 (72.73%), Query Frame = 1
Query:    7 RLEELGGSHVLCGLARLIMCLAEVPVFHTSGAMIRCMGVQGVIALAQTAYLIRFIYYSVGPPSSHFIKPEPSGVFHG 237
            RLEELGGS VLCGLARLIMC+AEVP F+ SG +IR  G +GVIALAQ AYL RF+YYSV       +   PS V HG
Sbjct:  320 RLEELGGSRVLCGLARLIMCMAEVPFFYLSGPLIRRAGARGVIALAQLAYLTRFVYYSVLREPWWVL---PSEVLHG 393          
BLAST of mRNA_H-elongata_contig176049.4597.1 vs. uniprot
Match: A0A6H5JI17_9PHAE (MFS_1_like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI17_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 3.270e-14
Identity = 33/58 (56.90%), Postives = 45/58 (77.59%), Query Frame = 1
Query:   10 LEELGGSHVLCGLARLIMCLAEVPVFHTSGAMIRCMGVQGVIALAQTAYLIRFIYYSV 183
            L+ELGGSHVL GLA ++MC  EVP F+ SG+ IR +G + V+AL+Q  Y++R +YYSV
Sbjct:  209 LDELGGSHVLLGLAGVVMCCGEVPFFYVSGSFIRKIGPRNVVALSQIGYIVRLVYYSV 266          
BLAST of mRNA_H-elongata_contig176049.4597.1 vs. uniprot
Match: D7G4M5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4M5_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 5.000e-14
Identity = 33/58 (56.90%), Postives = 45/58 (77.59%), Query Frame = 1
Query:   10 LEELGGSHVLCGLARLIMCLAEVPVFHTSGAMIRCMGVQGVIALAQTAYLIRFIYYSV 183
            L+ELGGSHVL GLA ++MC  EVP F+ SG+ IR +G + V+AL+Q  Y++R +YYSV
Sbjct:  268 LDELGGSHVLLGLAGVVMCCGEVPFFYVSGSFIRKIGPRNVVALSQIGYIVRLVYYSV 325          
BLAST of mRNA_H-elongata_contig176049.4597.1 vs. uniprot
Match: A0A8J9YL07_BRALA (MFSD6 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9YL07_BRALA)

HSP 1 Score: 61.2 bits (147), Expect = 6.030e-9
Identity = 33/84 (39.29%), Postives = 51/84 (60.71%), Query Frame = 1
Query:   10 LEELGGSHVLCGLARLIMCLAEVPVFHTSGAMIRCMGVQGVIALAQTAYLIRFIYYSVGPPSSHFIKPEPSGVFHGKVSLGRVF 261
            L++LGGS +L GLA +I C+AE+P+F  SG +I  +G + +  LA   Y IRF+ YS+ P     +  EP    HG ++ G ++
Sbjct:  240 LKDLGGSQLLLGLALMINCVAEIPIFFFSGKVIHTIGHKRIFQLALFCYFIRFMSYSLIPSPWWVLMIEP---LHG-ITFGAMY 319          
BLAST of mRNA_H-elongata_contig176049.4597.1 vs. uniprot
Match: A9VAW9_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9VAW9_MONBE)

HSP 1 Score: 57.4 bits (137), Expect = 1.370e-7
Identity = 24/57 (42.11%), Postives = 39/57 (68.42%), Query Frame = 1
Query:   10 LEELGGSHVLCGLARLIMCLAEVPVFHTSGAMIRCMGVQGVIALAQTAYLIRFIYYS 180
            +EELGG+  + G+AR +MC AEVP+F  SGA+   +G  G + +   A+++RF+ Y+
Sbjct:  284 IEELGGTKTIQGMARFVMCAAEVPMFWYSGAIFDRLGTTGCLVVTFCAFIVRFLIYA 340          
BLAST of mRNA_H-elongata_contig176049.4597.1 vs. uniprot
Match: A0A7S0QMW0_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QMW0_9CRYP)

HSP 1 Score: 55.1 bits (131), Expect = 3.090e-7
Identity = 25/57 (43.86%), Postives = 36/57 (63.16%), Query Frame = 1
Query:    7 RLEELGGSHVLCGLARLIMCLAEVPVFHTSGAMIRCMGVQGVIALAQTAYLIRFIYY 177
            RL+ELGG+ +L GL   + C  E PVFH S A+IR +G+ GV+ L  +   +R  +Y
Sbjct:   28 RLQELGGTTLLMGLTLAVNCAVEAPVFHFSAAVIRRLGLVGVLVLCLSLMAVRLAFY 84          
BLAST of mRNA_H-elongata_contig176049.4597.1 vs. uniprot
Match: A0A7S1N2X9_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1N2X9_9EUGL)

HSP 1 Score: 52.0 bits (123), Expect = 5.490e-6
Identity = 23/58 (39.66%), Postives = 39/58 (67.24%), Query Frame = 1
Query:   10 LEELGGSHVLCGLARLIMCLAEVPVFHTSGAMIRCMGVQGVIALAQTAYLIRFIYYSV 183
            L+ LGG+ +L GL+     L E+P+F  +GA+++ +GV G++ LA TAY  R + Y++
Sbjct:   10 LKALGGTSLLMGLSVTFTVLCEIPLFFFTGALMKRIGVSGLLTLAMTAYFTRLVGYTL 67          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig176049.4597.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7G3W1_ECTSI1.010e-2179.66MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K6H4_9PHAE1.080e-2179.66MFS_1_like domain-containing protein n=1 Tax=Ectoc... [more]
A0A6H5JEM5_9PHAE2.160e-2064.94MFS_1_like domain-containing protein n=1 Tax=Ectoc... [more]
A0A6H5JI17_9PHAE3.270e-1456.90MFS_1_like domain-containing protein n=1 Tax=Ectoc... [more]
D7G4M5_ECTSI5.000e-1456.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A8J9YL07_BRALA6.030e-939.29MFSD6 protein n=1 Tax=Branchiostoma lanceolatum Ta... [more]
A9VAW9_MONBE1.370e-742.11Predicted protein n=1 Tax=Monosiga brevicollis Tax... [more]
A0A7S0QMW0_9CRYP3.090e-743.86Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A7S1N2X9_9EUGL5.490e-639.66Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig176049contigH-elongata_contig176049:691..963 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.5
Seed ortholog evalue1.4e-17
Seed eggNOG ortholog2880.D7G3W1
KEGG koko:K11367
EggNOG free text desc.MFS_1 like family
EggNOG OGsKOG3762@1,KOG3762@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03021,ko03036
Hectar predicted targeting categoryother localisation
Exons1
Model size273
Cds size273
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930019.9447787-CDS-H-elongata_contig176049:690..9631622930019.9447787-CDS-H-elongata_contig176049:690..963Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig176049 691..963 +
1691679248.7502277-CDS-H-elongata_contig176049:690..9631691679248.7502277-CDS-H-elongata_contig176049:690..963Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig176049 691..963 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig176049.4597.1prot_H-elongata_contig176049.4597.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig176049 691..963 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig176049.4597.1

>prot_H-elongata_contig176049.4597.1 ID=prot_H-elongata_contig176049.4597.1|Name=mRNA_H-elongata_contig176049.4597.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=91bp
MSRLEELGGSHVLCGLARLIMCLAEVPVFHTSGAMIRCMGVQGVIALAQT
AYLIRFIYYSVGPPSSHFIKPEPSGVFHGKVSLGRVFMCL*
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mRNA from alignment at H-elongata_contig176049:691..963+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig176049.4597.1 ID=mRNA_H-elongata_contig176049.4597.1|Name=mRNA_H-elongata_contig176049.4597.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=273bp|location=Sequence derived from alignment at H-elongata_contig176049:691..963+ (Himanthalia elongata Himel1 dioecious)
ATGTCAAGGCTGGAAGAGCTTGGGGGTTCGCACGTATTGTGCGGATTAGC ACGACTTATCATGTGTCTGGCGGAGGTTCCAGTTTTCCACACCTCCGGAG CGATGATTCGGTGCATGGGAGTGCAGGGTGTCATCGCCTTGGCCCAGACG GCTTACCTTATTCGCTTCATATACTATTCGGTAGGTCCCCCGTCGAGTCA TTTTATCAAGCCAGAGCCTTCAGGGGTATTTCACGGCAAAGTATCTCTGG GGAGGGTGTTCATGTGTTTATGA
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Coding sequence (CDS) from alignment at H-elongata_contig176049:691..963+

>mRNA_H-elongata_contig176049.4597.1 ID=mRNA_H-elongata_contig176049.4597.1|Name=mRNA_H-elongata_contig176049.4597.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=546bp|location=Sequence derived from alignment at H-elongata_contig176049:691..963+ (Himanthalia elongata Himel1 dioecious)
ATGTCAAGGCTGGAAGAGCTTGGGGGTTCGCACGTATTGTGCGGATTAGC
ACGACTTATCATGTGTCTGGCGGAGGTTCCAGTTTTCCACACCTCCGGAG
CGATGATTCGGTGCATGGGAGTGCAGGGTGTCATCGCCTTGGCCCAGACG
GCTTACCTTATTCGCTTCATATACTATTCGGTAGGTCCCCCGTCGAGTCA
TTTTATCAAGCCAGAGCCTTCAGGGGTATTTCACGGCAAAGTATCTCTGG
GGAGGGTGTTCATGTGTTTATGAATGTCAAGGCTGGAAGAGCTTGGGGGT
TCGCACGTATTGTGCGGATTAGCACGACTTATCATGTGTCTGGCGGAGGT
TCCAGTTTTCCACACCTCCGGAGCGATGATTCGGTGCATGGGAGTGCAGG
GTGTCATCGCCTTGGCCCAGACGGCTTACCTTATTCGCTTCATATACTAT
TCGGTAGGTCCCCCGTCGAGTCATTTTATCAAGCCAGAGCCTTCAGGGGT
ATTTCACGGCAAAGTATCTCTGGGGAGGGTGTTCATGTGTTTATGA
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