mRNA_H-elongata_contig17601.4596.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17601.4596.1
Unique NamemRNA_H-elongata_contig17601.4596.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig17601.4596.1 vs. uniprot
Match: A0A6H5JDH3_9PHAE (SMC_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDH3_9PHAE)

HSP 1 Score: 284 bits (727), Expect = 1.190e-88
Identity = 159/248 (64.11%), Postives = 184/248 (74.19%), Query Frame = 1
Query:    1 KILSSELRALRRRSGEKDRRSGGPAVD---------------TGAVDEVTFRQRQAKVGVLKQQLQSVLEGTRQLEAGVIACEGRMHEANEVCYAVVRAELRTLFGALCRNKSADLVLEGTKFEEGLRLVVRN------EPAGATTPPVAPAATTEVGRSPQELSGGQQALLGLAFVLALASYQAPPLCLLDEVDAALDETNQAAAARLLAMRFKEAQAFCVSHHSDFHRQSDKIIAVEICDGVSRVR 681
            K+LS+ELR LR +SG+  +                        G+VDEVT  +R+AKVG+LKQQL+SVLEGTRQLEAGV+ACEGRMHEANE CYA VR ELR+LFGALC NKSADLV+ G K E+G+RLVVRN        A  TT   + A    V R+PQELSGGQQALLGLA VLAL+SYQAPPLCLLDEVDAALDETNQAAAARL+A+ F+E QA CVSHH+DFHRQS   +AVE+ DGVSRV+
Sbjct:  437 KLLSTELRGLRHQSGQHQQHXXXXXXXXXXXXXXXXXXXXXVAGSVDEVTVSKRRAKVGMLKQQLRSVLEGTRQLEAGVVACEGRMHEANEACYASVRGELRSLFGALCHNKSADLVMAGPKLEDGIRLVVRNGNTQAVAAATITTTTPSSAVPAVVERAPQELSGGQQALLGLALVLALSSYQAPPLCLLDEVDAALDETNQAAAARLVALTFREGQALCVSHHADFHRQSGHCVAVEMRDGVSRVQ 684          
BLAST of mRNA_H-elongata_contig17601.4596.1 vs. uniprot
Match: D7FQC9_ECTSI (SMC_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQC9_ECTSI)

HSP 1 Score: 279 bits (714), Expect = 1.190e-83
Identity = 160/258 (62.02%), Postives = 184/258 (71.32%), Query Frame = 1
Query:    1 KILSSELRALRRRSGEKDRRSGGPA------------------VDTGAVDEVTFRQRQAKVGVLKQQLQSVLEGTRQLEAGVIACEGRMHEANEVCYAVVRAELRTLFGALCRNKSADLVLEGTKFEEGLRLVVRNEPAGATTPPVAP-------------AATTEVGRSPQELSGGQQALLGLAFVLALASYQAPPLCLLDEVDAALDETNQAAAARLLAMRFKEAQAFCVSHHSDFHRQSDKIIAVEICDGVSRVR 681
            K+LS+ELR LRR+SG++ +                        V  G+VDEVT  +R+AKVG+LKQQL+SVLEGTRQLEAGV+ACEGRMHEANE CYA VR ELR+LFGALCRNKSADLV+ G K E+GLRLVVRN    A                    A    V R+PQELSGGQQALLGLA VLAL+SYQAPPLCLLDEVDAALDETNQAAAARL+A+ F+E QA CVSHH+DFHRQS   + VE+ DGVSRV+
Sbjct:  908 KLLSTELRGLRRQSGQRQQXXXXXXXXXXXXXXXXXXXXXXXXVVAGSVDEVTVTKRRAKVGMLKQQLRSVLEGTRQLEAGVVACEGRMHEANEACYASVRGELRSLFGALCRNKSADLVMAGPKLEDGLRLVVRNGNTQAXXXXXXXXXXXXXXXXXXXXAVAGVVERAPQELSGGQQALLGLALVLALSSYQAPPLCLLDEVDAALDETNQAAAARLVALTFREGQALCVSHHADFHRQSGHCVPVEMRDGVSRVQ 1165          
BLAST of mRNA_H-elongata_contig17601.4596.1 vs. uniprot
Match: A0A836CK59_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK59_9STRA)

HSP 1 Score: 130 bits (327), Expect = 4.690e-31
Identity = 95/241 (39.42%), Postives = 121/241 (50.21%), Query Frame = 1
Query:   46 EKDRRSGGPAVDTGAVDEVTFRQRQAKVGVLKQQLQSVLEGTRQLEAGVIACEGRMHEANEVCYAVVRAELRTLFGALCRNKSADLVLEGTKFEEGLRLVVRNEPAGATTPPVAPAATTEV------------------------------GRSPQELSGGQQALLGLAFVLALASYQAPPLCLLDEVDAALDETNQAAAARLLAMRFKEAQAFCVSHHSDFHRQSDKIIAVEICDGVSRV 678
            +K RR+ G A+  G VD    R R++ V  LKQQL  V E    LE G I  +G M  AN  CYA VR E R L  AL   K+ADL+ +  +    L   V N  + ++    APAA  +                                +S +ELSGGQQ+LLGLAFV AL++Y A PL LLDEVDAALD  NQ   A LL   F+ AQ  CVSHH+     + + + V +  G SR+
Sbjct: 1063 KKLRRAAG-ALGAG-VDATQVRLRRSTVETLKQQLNMVREAMSHLEGGAILIQGHMEAANAACYAAVRGEFRRLLSALMPTKAADLLRDAARH--ALAFTVTNLTSSSSAQRDAPAAVHDAMDISDDEXXXXXXXXXXXXXXXXXXXXXXXXKSARELSGGQQSLLGLAFVFALSAYHAAPLYLLDEVDAALDAANQRRVAALLPRAFRGAQVLCVSHHAATQALATRRVRVAMEKGSSRI 1299          
BLAST of mRNA_H-elongata_contig17601.4596.1 vs. uniprot
Match: F0WC70_9STRA (Chromosome segregation protein Smc putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WC70_9STRA)

HSP 1 Score: 105 bits (263), Expect = 7.850e-23
Identity = 62/178 (34.83%), Postives = 93/178 (52.25%), Query Frame = 1
Query:   79 DTGAVDEVTFRQRQAKVGVLKQQLQSVLEGTRQLEAGVIACEGRMHEANEVCYAVVRAELRTLFGALCRNKSADLVLEGTKFEEGLRLVVRNEPAGATTPPVAPAATTEVGRSPQELSGGQQALLGLAFVLALASYQAPPLCLLDEVDAALDETNQAAAARLLAMRFKEAQAFCVSHH 612
            D+  V   +  Q+Q  +   + Q   +L   R LE GV + + +    N++ +  +    + +F     +K A + L G K E G+   V+++ +  T             +S +E+SGGQ ALLG++++ ALAS  A PLC+LDE+DAALDE NQA  A L A  F   Q  CVSHH
Sbjct:  303 DSPVVSNGSLMQKQQALSEFESQAAKILIAVRNLEEGVRSTDEKTTRVNQLAFESIARRFQQIFEQAIPSKRAIMALRGEKVELGIEFRVQDQSSNLT-------------KSTKEMSGGQLALLGMSYIFALASCSASPLCILDEIDAALDEQNQAIIASLAASNFSSIQVICVSHH 467          
BLAST of mRNA_H-elongata_contig17601.4596.1 vs. uniprot
Match: A0A024GMI1_9STRA (SMC_N domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GMI1_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 1.510e-16
Identity = 64/210 (30.48%), Postives = 98/210 (46.67%), Query Frame = 1
Query:   79 DTGAVDEVTFRQRQAKVGVLKQQLQSVLEGTRQLEAGVIACEGRMHEANEVCYAVVRAELRTLFGALCRNKSADLVLEGTKFE----------EGLRLVVRNEPAGATTPPVAPAATTEVGRSPQELSGGQQALLGLAFVLALASYQAPPLCLLDEVDAALDETNQAAAARLLAMRFKEAQAFCVSHHSDFHRQSDKIIAVEICDGVSRV 678
            D+  V   +F Q+Q  +   + Q   V      LE G+   + +    N++ +  +    + +F     +K A L L   K E          E LR++ +               +  + ++   LSGGQ ALLG++++ ALAS  A PLC+LDE+DAALDE NQ   A L A  F+  Q  CVSHH   H ++ ++I V   D  S +
Sbjct: 1104 DSPIVSNGSFMQKQKALSEFQTQAAKVAIAVTNLEDGIRTTDEQTTWVNQLAFKSIANRFQHIFEQAIPSKRAFLELSDEKVEVSVEDWMDTHETLRILFKFGVEFKVQD-----RSHSLIKATNTLSGGQLALLGMSYIFALASCSAIPLCILDEIDAALDEQNQENVAALAASNFRSIQVICVSHHKAMHNKAQQLIQVRKKDTTSAI 1308          
BLAST of mRNA_H-elongata_contig17601.4596.1 vs. uniprot
Match: A0A3C0FAG6_9FIRM (Chromosome partition protein Smc n=1 Tax=Clostridiales bacterium UBA8153 TaxID=2060924 RepID=A0A3C0FAG6_9FIRM)

HSP 1 Score: 81.6 bits (200), Expect = 3.580e-14
Identity = 73/216 (33.80%), Postives = 97/216 (44.91%), Query Frame = 1
Query:   49 KDRRSGGPAVDTGAVDEVTFRQRQAKVGVLKQQLQSVLEGTRQLEAGVIACEGRMHEANEVCYAVVRAELRTLFGALCRNKSADLVLE--GTKFEEGLRLVVRNEPAGATTPPVAPAATTEVGRSPQELS---GGQQALLGLAFVLALASYQAPPLCLLDEVDAALDETNQAAAARLLAMRFKEAQAFCVSHHSDFHRQSDKIIAVEICD-GVSRV 678
            K R +   AV+ GA+DE  FR+   +   L  Q   V    R L   +   +G+M          VR+  R LF  L    SADL L   G   E G+ + V+        PP         GR P  LS   GG++AL   AF+ A+ S    PLC+LDEV+A LDETN A    LL       Q   V+HH      +D +  V + + GVSR+
Sbjct:  994 KGRLAAFGAVNLGAIDE--FRRVSERRDFLSAQRADVESACRDLRRVIQETDGQMESMFRATLTAVRSSFRQLFRRLFGGGSADLTLSDPGRPLESGVEIAVQ--------PP---------GRRPHNLSLLSGGEKALTASAFLFAMLSVNPSPLCVLDEVEATLDETNAARFVSLLRDFTSRTQFIIVTHHKVTMEAADVLYGVTMEENGVSRL 1190          
BLAST of mRNA_H-elongata_contig17601.4596.1 vs. uniprot
Match: A0A7C4JIT1_9BACT (Chromosome segregation protein SMC n=1 Tax=Candidatus Acetothermia bacterium TaxID=2053493 RepID=A0A7C4JIT1_9BACT)

HSP 1 Score: 73.6 bits (179), Expect = 1.700e-11
Identity = 69/225 (30.67%), Postives = 108/225 (48.00%), Query Frame = 1
Query:    4 ILSSELRALRRRSGEKDRRSGGPAVDTGAVDEVTFRQRQAKVGVLKQQLQSVLEGTRQLEAGVIACEGRMHEANEVCYAVVRAELRTLFGALCRNKSADLVLEGTKFEEGLRLVVRNEPAGATTPPVAPAATTEVGRSPQELSGGQQALLGLAFVLALASYQAPPLCLLDEVDAALDETNQAAAARLLAMRFKEAQAFCVSHHSDFHRQSDKIIAVEICDGVSRV 678
            +L + LR +     E++  + GP V+  A++E  + Q  A++  +K ++Q++ +   ++E  +   E +  E        V A+L  LF  L     A L L       G  L+++    G               R    LSGG++AL+ +AFVLALA+ +  P  LLDEVDAALD  N    ARLL    + +Q   VSH+ +  R +D+I  V +  G S V
Sbjct:  324 VLQARLRQI-----ERELAALGP-VNLRAIEE--YEQALAELQEIKTRVQTLEKEKEEIERFIAEVERKKREKFVETMEAVSAQLNQLFVRLFGGGEARLSL-AEPGNLGSDLLIQVRLPGKEL------------RVLDALSGGEKALVAIAFVLALAAGKPAPFYLLDEVDAALDRANSERLARLLKEFAQTSQVIVVSHNEELVRHADRIYGVVLRGGASEV 527          
BLAST of mRNA_H-elongata_contig17601.4596.1 vs. uniprot
Match: A0A7V0JVR2_9BACT (SMC_N domain-containing protein n=1 Tax=Candidatus Acetothermia bacterium TaxID=2053493 RepID=A0A7V0JVR2_9BACT)

HSP 1 Score: 72.4 bits (176), Expect = 2.320e-11
Identity = 56/172 (32.56%), Postives = 80/172 (46.51%), Query Frame = 1
Query:  172 RQLEAGVIACEGRMHEANEVCYAVVRAELRTLFGALCRNKSADLVLEGT-KFEEGLRLVVRNEPAGATTPPVAPAATTEVGRSPQELSGGQQALLGLAFVLALASYQAPPLCLLDEVDAALDETNQAAAARLLAMRFKEAQAFCVSHHSDFHRQSDKIIAVEICDGVSRVRA 684
            R++E  +   EG+     +     V AEL  +F  L     A L LE       GLR+ VR                         LSGG++AL+ +AFVLAL++ +  P  +LDE DAALD  N    A LL    +++Q   VSH+ +  R +D++  V +  G SRV A
Sbjct:  155 REIEEFIAEVEGKKRRRFQETLEAVSAELDRIFKVLFGGGEAKLSLESPGDLSSGLRIQVRLPGKELVLL--------------DALSGGERALVAIAFVLALSAGRPAPFYILDEADAALDRPNSERLAGLLREIARDSQVIVVSHNEELVRHADRVYGVTLRAGASRVLA 312          
BLAST of mRNA_H-elongata_contig17601.4596.1 vs. uniprot
Match: A0A7C4H4S5_9BACT (SMC_N domain-containing protein n=1 Tax=Candidatus Acetothermia bacterium TaxID=2053493 RepID=A0A7C4H4S5_9BACT)

HSP 1 Score: 69.7 bits (169), Expect = 5.030e-11
Identity = 62/197 (31.47%), Postives = 94/197 (47.72%), Query Frame = 1
Query:   88 AVDEVTFRQRQAKVGVLKQQLQSVLEGTRQLEAGVIACEGRMHEANEVCYAVVRAELRTLFGALCRNKSADLVLEGTKFEEGLRLVVRNEPAGATTPPVAPAATTEVGRSPQELSGGQQALLGLAFVLALASYQAPPLCLLDEVDAALDETNQAAAARLLAMRFKEAQAFCVSHHSDFHRQSDKIIAVEICDGVSRV 678
            A++E  + Q  A++  +K ++Q++ +   ++E  +   E +  E        V A+L  LF  L     A L L       G  L+++    G               R    LSGG++AL+ +AFVLALA+ +  P  LLDEVDAALD  N    ARLL    + +Q   VSH+ +  R +D+I  V +  G S V
Sbjct:    8 AIEE--YEQALAELQEIKTRVQTLEKEKEEIERFIAEVERKKREKFVETMEAVSAQLNHLFVRLFGGGEARLSL-AEPGNLGSDLLIQVRLPGKEL------------RVLDALSGGEKALVAIAFVLALAAGKPAPFYLLDEVDAALDRANSERLARLLKEFAQTSQVIVVSHNEELVRHADRIYGVVLRGGASEV 189          
BLAST of mRNA_H-elongata_contig17601.4596.1 vs. uniprot
Match: A0A1P8JW63_9BURK (Chromosome partition protein Smc n=1 Tax=Rhodoferax koreense TaxID=1842727 RepID=A0A1P8JW63_9BURK)

HSP 1 Score: 72.4 bits (176), Expect = 5.120e-11
Identity = 60/206 (29.13%), Postives = 98/206 (47.57%), Query Frame = 1
Query:   73 AVDTGAVDEVTFRQRQAKVGVLKQQLQSVLEGTRQLEAGVIACEGRMHEANEVCYAVVRAELRTLFGALCRNKSADLVLEGTKF-EEGLRLVVRNEPAGATTPPVAPAATTEVGRSPQELSGGQQALLGLAFVLALASYQAPPLCLLDEVDAALDETNQAAAARLLAMRFKEAQAFCVSHHSDFHRQSDKIIAVEICD-GVSRVRA 684
            AV+  A+DE+T  + + +   L  Q   ++E    LE  +   +G   E     +  V A    +F  L    +A LV+ G +  + G+++V   +P G     +              LSGG++AL  +A V A+      P CLLDEVDA LD+ N    A+L+A   K+ Q   +SH+      ++++I V + + GVSR+ A
Sbjct:  973 AVNLAALDELTVARERKQF--LDAQTADLVEAMTTLEDAIRKIDGETRELLSGTFNTVNAHFGKMFPELFGGGNARLVITGDEILDSGVQVVA--QPPGKKNQTI------------HLLSGGEKALTAIALVFAIFQLNPAPFCLLDEVDAPLDDANTERYAKLVASMSKQTQFLFISHNKIAMEMAEQLIGVTMQEQGVSRIVA 1162          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17601.4596.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JDH3_9PHAE1.190e-8864.11SMC_N domain-containing protein n=1 Tax=Ectocarpus... [more]
D7FQC9_ECTSI1.190e-8362.02SMC_N domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A836CK59_9STRA4.690e-3139.42P-loop containing nucleoside triphosphate hydrolas... [more]
F0WC70_9STRA7.850e-2334.83Chromosome segregation protein Smc putative n=1 Ta... [more]
A0A024GMI1_9STRA1.510e-1630.48SMC_N domain-containing protein n=1 Tax=Albugo can... [more]
A0A3C0FAG6_9FIRM3.580e-1433.80Chromosome partition protein Smc n=1 Tax=Clostridi... [more]
A0A7C4JIT1_9BACT1.700e-1130.67Chromosome segregation protein SMC n=1 Tax=Candida... [more]
A0A7V0JVR2_9BACT2.320e-1132.56SMC_N domain-containing protein n=1 Tax=Candidatus... [more]
A0A7C4H4S5_9BACT5.030e-1131.47SMC_N domain-containing protein n=1 Tax=Candidatus... [more]
A0A1P8JW63_9BURK5.120e-1129.13Chromosome partition protein Smc n=1 Tax=Rhodofera... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17601contigH-elongata_contig17601:5614..7240 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score284.6
Seed ortholog evalue4e-74
Seed eggNOG ortholog2880.D7FQC9
KEGG koko:K06674
KEGG Pathwayko04111,map04111
GOsGO:0000070,GO:0000217,GO:0000228,GO:0000278,GO:0000280,GO:0000793,GO:0000794,GO:0000798,GO:0000819,GO:0003674,GO:0003676,GO:0003677,GO:0003680,GO:0003690,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0008150,GO:0008152,GO:0008278,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022402,GO:0030892,GO:0031974,GO:0031981,GO:0032991,GO:0033554,GO:0034641,GO:0034990,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0046483,GO:0048285,GO:0050896,GO:0051276,GO:0051716,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0098813,GO:0140014,GO:1901360,GO:1901363,GO:1903047,GO:1990837
EggNOG free text desc.chromosome condensation
EggNOG OGsCOG1196@1,KOG0933@2759
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Hectar predicted targeting categoryother localisation
Exons5
Model size687
Cds size687
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17601.4596.1prot_H-elongata_contig17601.4596.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17601 5614..7240 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930019.8312526-CDS-H-elongata_contig17601:5613..57541622930019.8312526-CDS-H-elongata_contig17601:5613..5754Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17601 5614..5754 -
1691679248.6970978-CDS-H-elongata_contig17601:5613..57541691679248.6970978-CDS-H-elongata_contig17601:5613..5754Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17601 5614..5754 -
1622930019.8409653-CDS-H-elongata_contig17601:5931..61561622930019.8409653-CDS-H-elongata_contig17601:5931..6156Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17601 5932..6156 -
1691679248.7122676-CDS-H-elongata_contig17601:5931..61561691679248.7122676-CDS-H-elongata_contig17601:5931..6156Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17601 5932..6156 -
1622930019.8564088-CDS-H-elongata_contig17601:6518..66341622930019.8564088-CDS-H-elongata_contig17601:6518..6634Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17601 6519..6634 -
1691679248.723292-CDS-H-elongata_contig17601:6518..66341691679248.723292-CDS-H-elongata_contig17601:6518..6634Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17601 6519..6634 -
1622930019.8662817-CDS-H-elongata_contig17601:6868..69471622930019.8662817-CDS-H-elongata_contig17601:6868..6947Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17601 6869..6947 -
1691679248.7310479-CDS-H-elongata_contig17601:6868..69471691679248.7310479-CDS-H-elongata_contig17601:6868..6947Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17601 6869..6947 -
1622930019.8784184-CDS-H-elongata_contig17601:7114..72401622930019.8784184-CDS-H-elongata_contig17601:7114..7240Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17601 7115..7240 -
1691679248.7387779-CDS-H-elongata_contig17601:7114..72401691679248.7387779-CDS-H-elongata_contig17601:7114..7240Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17601 7115..7240 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17601.4596.1

>prot_H-elongata_contig17601.4596.1 ID=prot_H-elongata_contig17601.4596.1|Name=mRNA_H-elongata_contig17601.4596.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=229bp
KILSSELRALRRRSGEKDRRSGGPAVDTGAVDEVTFRQRQAKVGVLKQQL
QSVLEGTRQLEAGVIACEGRMHEANEVCYAVVRAELRTLFGALCRNKSAD
LVLEGTKFEEGLRLVVRNEPAGATTPPVAPAATTEVGRSPQELSGGQQAL
LGLAFVLALASYQAPPLCLLDEVDAALDETNQAAAARLLAMRFKEAQAFC
VSHHSDFHRQSDKIIAVEICDGVSRVRA*
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mRNA from alignment at H-elongata_contig17601:5614..7240-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17601.4596.1 ID=mRNA_H-elongata_contig17601.4596.1|Name=mRNA_H-elongata_contig17601.4596.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1627bp|location=Sequence derived from alignment at H-elongata_contig17601:5614..7240- (Himanthalia elongata Himel1 dioecious)
AAGATACTGTCCTCCGAGCTCCGGGCTCTCCGTCGTCGGTCCGGGGAGAA GGATCGACGGAGCGGAGGACCCGCGGTGGACACCGGGGCCGTAGACGAGG TCACCTTCCGTCAAAGGCAGGCCAAGGTCTGTCAGTCGAGACGCCTGGGT TGGATACCCTCCCCGCCTTTGTCCGCTGTGTTGACCCGTACGCGACTGGG TGCCTCGCCGGACAGTGAGTTGTAGACGTCTGCCGCGGCGACTCTCCATT CAAATGCAGTACATTGCTTTGGTCTCTGTTTCTTCAACAACAGGTCGGTG TCCTGAAGCAGCAGCTGCAGAGCGTCCTGGAGGGCACGCGGCAGCTGGAG GCCGGGGTGATCGCCTGCGAGGGTGAACGGCTACCATCCATTCTTACCTT TCTCGTGCACTCGCCTATTATTGGTCCTCTTCTTCAATGCCACGTTTTTA AAAGGCTTGTAGAGTCGAGCATCGCAATTTTTTCACAAGTTGACGTGTCT CCTCCTTTTTTCACGTACTTCTTATCGACGAGATCGATGGTTTTCCCGGG ATCCAGGCGTGTCGCGCCGTAAGACCGTTTCCAACGTACGCGCTTGCGGT TCACAGGGCGTATGCACGAGGCGAACGAGGTTTGCTACGCGGTCGTTCGC GCGGAACTGAGGACCCTGTTCGGCGCCCTGTGTAGGAACAAGAGCGCCGA TCTCGTCTTGGAGGGGACAAAGGTGCGTGCAGTCTCTTGCGGTGGTTGTT CCGATGGTGTGCGCAGAACTGCCGCGCCATTGGTTTGGCCCGCTGCCGTA GACATCGAGACGAACCCCTTGCAGGGTTGGGGGGGGAGGAATTTGTCAGA AAAAAAACGAGTGATATCCCAGTTCATTTCGGGCGCGATGCATGCGGCGC ATTCACAACTTAAAAGGGGCGAACACAGTTTTCTACCCTCTTGTCGAATC CCTCGCCTCCGATCTGCACACCGGGTGAAGTGTTACGCTACAATTAAAAC CCCTCTAGCTCGCGACTGCTGGACGCACGATATGCCTTTCCTCCGTTGGA TTCATGCTTCTCTCGGGCTATCCTGTCTTGACAGTTTGAAGAAGGCCTTC GCCTGGTCGTCAGGAATGAACCCGCCGGAGCAACAACGCCTCCCGTTGCG CCAGCCGCAACCACCGAGGTCGGGCGCTCCCCGCAGGAGCTCAGTGGAGG GCAGCAAGCCCTGCTCGGGCTGGCATTCGTGCTCGCGCTGGCATCGTACC AGGCGCCACCCCTTTGCCTTCTGGACGAGGTCGACGCTGCCCTCGACGAG ACAAACCAGGTACTGTACTAACCATTTAATTCCGCATACTGTATTTCCAA GTCCATGCCGGAGGGAAACGATTAGCACTTTCCCGAGCTCGACAAAAAAA CGCCCCGAGACTGAAAGCCCGTGGAACGAAGGGAAGCTCACCTGATTGTT TGTTTCGCCGATCCAATTCGTTCTGTTTATCCACAGGCAGCGGCAGCTCG CCTGCTGGCGATGAGGTTCAAGGAGGCTCAGGCGTTTTGTGTGTCGCACC ATAGCGACTTCCATCGCCAGAGCGACAAGATTATTGCAGTCGAGATTTGC GATGGGGTTTCTCGAGTACGGGCGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig17601:5614..7240-

>mRNA_H-elongata_contig17601.4596.1 ID=mRNA_H-elongata_contig17601.4596.1|Name=mRNA_H-elongata_contig17601.4596.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1374bp|location=Sequence derived from alignment at H-elongata_contig17601:5614..7240- (Himanthalia elongata Himel1 dioecious)
AAGATACTGTCCTCCGAGCTCCGGGCTCTCCGTCGTCGGTCCGGGGAGAA
GGATCGACGGAGCGGAGGACCCGCGGTGGACACCGGGGCCGTAGACGAGG
TCACCTTCCGTCAAAGGCAGGCCAAGAAGATACTGTCCTCCGAGCTCCGG
GCTCTCCGTCGTCGGTCCGGGGAGAAGGATCGACGGAGCGGAGGACCCGC
GGTGGACACCGGGGCCGTAGACGAGGTCACCTTCCGTCAAAGGCAGGCCA
AGGTCGGTGTCCTGAAGCAGCAGCTGCAGAGCGTCCTGGAGGGCACGCGG
CAGCTGGAGGCCGGGGTGATCGCCTGCGAGGGTCGGTGTCCTGAAGCAGC
AGCTGCAGAGCGTCCTGGAGGGCACGCGGCAGCTGGAGGCCGGGGTGATC
GCCTGCGAGGGGCGTATGCACGAGGCGAACGAGGTTTGCTACGCGGTCGT
TCGCGCGGAACTGAGGACCCTGTTCGGCGCCCTGTGTAGGAACAAGAGCG
CCGATCTCGTCTTGGAGGGGACAAAGGGCGTATGCACGAGGCGAACGAGG
TTTGCTACGCGGTCGTTCGCGCGGAACTGAGGACCCTGTTCGGCGCCCTG
TGTAGGAACAAGAGCGCCGATCTCGTCTTGGAGGGGACAAAGTTTGAAGA
AGGCCTTCGCCTGGTCGTCAGGAATGAACCCGCCGGAGCAACAACGCCTC
CCGTTGCGCCAGCCGCAACCACCGAGGTCGGGCGCTCCCCGCAGGAGCTC
AGTGGAGGGCAGCAAGCCCTGCTCGGGCTGGCATTCGTGCTCGCGCTGGC
ATCGTACCAGGCGCCACCCCTTTGCCTTCTGGACGAGGTCGACGCTGCCC
TCGACGAGACAAACCAGTTTGAAGAAGGCCTTCGCCTGGTCGTCAGGAAT
GAACCCGCCGGAGCAACAACGCCTCCCGTTGCGCCAGCCGCAACCACCGA
GGTCGGGCGCTCCCCGCAGGAGCTCAGTGGAGGGCAGCAAGCCCTGCTCG
GGCTGGCATTCGTGCTCGCGCTGGCATCGTACCAGGCGCCACCCCTTTGC
CTTCTGGACGAGGTCGACGCTGCCCTCGACGAGACAAACCAGGCAGCGGC
AGCTCGCCTGCTGGCGATGAGGTTCAAGGAGGCTCAGGCGTTTTGTGTGT
CGCACCATAGCGACTTCCATCGCCAGAGCGACAAGATTATTGCAGTCGAG
ATTTGCGATGGGGTTTCTCGAGTACGGGCGTAAGCAGCGGCAGCTCGCCT
GCTGGCGATGAGGTTCAAGGAGGCTCAGGCGTTTTGTGTGTCGCACCATA
GCGACTTCCATCGCCAGAGCGACAAGATTATTGCAGTCGAGATTTGCGAT
GGGGTTTCTCGAGTACGGGCGTAA
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