mRNA_H-elongata_contig17599.4593.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig17599.4593.1 vs. uniprot
Match: A0A6H5JVC8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVC8_9PHAE) HSP 1 Score: 52.0 bits (123), Expect = 1.500e-6 Identity = 23/44 (52.27%), Postives = 31/44 (70.45%), Query Frame = 1
Query: 1 MVMKLLKSLYGLRQCPTNWRGTVHEHLAEIGFISLKLNPCVYIY 132
+VMKL KSLYGL+Q P N+ + + EIGF +L +PCVY+Y
Sbjct: 136 LVMKLKKSLYGLKQSPRNFGNAFAKGIKEIGFTALLSDPCVYVY 179
BLAST of mRNA_H-elongata_contig17599.4593.1 vs. uniprot
Match: A0A2P4XQH3_9STRA (Integrase catalytic core protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XQH3_9STRA) HSP 1 Score: 52.0 bits (123), Expect = 1.940e-6 Identity = 21/40 (52.50%), Postives = 29/40 (72.50%), Query Frame = 1
Query: 7 MKLLKSLYGLRQCPTNWRGTVHEHLAEIGFISLKLNPCVY 126
++LLKSLYGL+Q W +H +L E+GFI KL+PC+Y
Sbjct: 15 LRLLKSLYGLKQSGKLWNDEIHNYLLELGFIRSKLDPCLY 54
BLAST of mRNA_H-elongata_contig17599.4593.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE) HSP 1 Score: 52.0 bits (123), Expect = 1.960e-6 Identity = 23/44 (52.27%), Postives = 31/44 (70.45%), Query Frame = 1
Query: 1 MVMKLLKSLYGLRQCPTNWRGTVHEHLAEIGFISLKLNPCVYIY 132
+VMKL KSLYGL+Q P N+ + + EIGF +L +PCVY+Y
Sbjct: 1032 LVMKLKKSLYGLKQSPRNFGNAFAKGIKEIGFTALLSDPCVYVY 1075
BLAST of mRNA_H-elongata_contig17599.4593.1 vs. uniprot
Match: A0A2P4X4H2_9STRA (Integrase catalytic core protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X4H2_9STRA) HSP 1 Score: 50.8 bits (120), Expect = 4.060e-6 Identity = 20/40 (50.00%), Postives = 29/40 (72.50%), Query Frame = 1
Query: 7 MKLLKSLYGLRQCPTNWRGTVHEHLAEIGFISLKLNPCVY 126
++LLKSLYGL+Q W +H +L E+GF+ KL+PC+Y
Sbjct: 123 LRLLKSLYGLKQSGKLWNDEIHNYLLELGFMRSKLDPCLY 162
BLAST of mRNA_H-elongata_contig17599.4593.1 vs. uniprot
Match: A0A6H5KFG1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFG1_9PHAE) HSP 1 Score: 50.1 bits (118), Expect = 8.490e-6 Identity = 23/44 (52.27%), Postives = 30/44 (68.18%), Query Frame = 1
Query: 1 MVMKLLKSLYGLRQCPTNWRGTVHEHLAEIGFISLKLNPCVYIY 132
+VMKL KSLYGL+Q P N+ + EIGF +L +PCVY+Y
Sbjct: 48 LVMKLKKSLYGLKQSPRNFGNAFAKGNKEIGFTALLSDPCVYVY 91
BLAST of mRNA_H-elongata_contig17599.4593.1 vs. uniprot
Match: A0A6H5L4S3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4S3_9PHAE) HSP 1 Score: 49.3 bits (116), Expect = 9.170e-6 Identity = 22/44 (50.00%), Postives = 31/44 (70.45%), Query Frame = 1
Query: 1 MVMKLLKSLYGLRQCPTNWRGTVHEHLAEIGFISLKLNPCVYIY 132
+VMKL KSLYGL+Q P N+ V + + +IGF +L +PCV +Y
Sbjct: 35 LVMKLKKSLYGLKQSPRNFGNAVAKGIKDIGFTALLSDPCVCVY 78
BLAST of mRNA_H-elongata_contig17599.4593.1 vs. uniprot
Match: A0A6G0WGW1_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WGW1_9STRA) HSP 1 Score: 49.3 bits (116), Expect = 1.750e-5 Identity = 20/46 (43.48%), Postives = 30/46 (65.22%), Query Frame = 1
Query: 7 MKLLKSLYGLRQCPTNWRGTVHEHLAEIGFISLKLNPCVYIYSENE 144
+K+LKSLYGLRQ P W + + L GF++ +PC+YIY+ +
Sbjct: 165 LKVLKSLYGLRQSPRCWNTLLDKTLKTFGFVAAPSDPCLYIYNSGD 210
BLAST of mRNA_H-elongata_contig17599.4593.1 vs. uniprot
Match: A0A6G0WTV0_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WTV0_9STRA) HSP 1 Score: 48.5 bits (114), Expect = 3.290e-5 Identity = 20/46 (43.48%), Postives = 30/46 (65.22%), Query Frame = 1
Query: 7 MKLLKSLYGLRQCPTNWRGTVHEHLAEIGFISLKLNPCVYIYSENE 144
+KLLKSLYGLRQ P W + + L GF++ +PC+YI++ +
Sbjct: 703 LKLLKSLYGLRQSPRCWNTLLDKTLKTFGFVAAPSDPCLYIHNSGD 748
BLAST of mRNA_H-elongata_contig17599.4593.1 vs. uniprot
Match: A0A6G0WM98_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WM98_9STRA) HSP 1 Score: 48.1 bits (113), Expect = 4.490e-5 Identity = 20/47 (42.55%), Postives = 27/47 (57.45%), Query Frame = 1
Query: 4 VMKLLKSLYGLRQCPTNWRGTVHEHLAEIGFISLKLNPCVYIYSENE 144
++KL KSLYGLRQ P W + L + GF +PC+Y+Y E
Sbjct: 443 ILKLKKSLYGLRQSPRCWNSLLDSTLKQFGFKPAASDPCIYVYGHME 489 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17599.4593.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig17599.4593.1 >prot_H-elongata_contig17599.4593.1 ID=prot_H-elongata_contig17599.4593.1|Name=mRNA_H-elongata_contig17599.4593.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=48bp MVMKLLKSLYGLRQCPTNWRGTVHEHLAEIGFISLKLNPCVYIYSENEback to top mRNA from alignment at H-elongata_contig17599:1774..1917- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig17599.4593.1 ID=mRNA_H-elongata_contig17599.4593.1|Name=mRNA_H-elongata_contig17599.4593.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=144bp|location=Sequence derived from alignment at H-elongata_contig17599:1774..1917- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig17599:1774..1917- >mRNA_H-elongata_contig17599.4593.1 ID=mRNA_H-elongata_contig17599.4593.1|Name=mRNA_H-elongata_contig17599.4593.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=288bp|location=Sequence derived from alignment at H-elongata_contig17599:1774..1917- (Himanthalia elongata Himel1 dioecious)back to top |