prot_H-elongata_contig17599.4593.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig17599.4593.1
Unique Nameprot_H-elongata_contig17599.4593.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length48
Homology
BLAST of mRNA_H-elongata_contig17599.4593.1 vs. uniprot
Match: A0A6H5JVC8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVC8_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 1.500e-6
Identity = 23/44 (52.27%), Postives = 31/44 (70.45%), Query Frame = 0
Query:    1 MVMKLLKSLYGLRQCPTNWRGTVHEHLAEIGFISLKLNPCVYIY 44
            +VMKL KSLYGL+Q P N+     + + EIGF +L  +PCVY+Y
Sbjct:  136 LVMKLKKSLYGLKQSPRNFGNAFAKGIKEIGFTALLSDPCVYVY 179          
BLAST of mRNA_H-elongata_contig17599.4593.1 vs. uniprot
Match: A0A2P4XQH3_9STRA (Integrase catalytic core protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XQH3_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 1.940e-6
Identity = 21/40 (52.50%), Postives = 29/40 (72.50%), Query Frame = 0
Query:    3 MKLLKSLYGLRQCPTNWRGTVHEHLAEIGFISLKLNPCVY 42
            ++LLKSLYGL+Q    W   +H +L E+GFI  KL+PC+Y
Sbjct:   15 LRLLKSLYGLKQSGKLWNDEIHNYLLELGFIRSKLDPCLY 54          
BLAST of mRNA_H-elongata_contig17599.4593.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 1.960e-6
Identity = 23/44 (52.27%), Postives = 31/44 (70.45%), Query Frame = 0
Query:    1 MVMKLLKSLYGLRQCPTNWRGTVHEHLAEIGFISLKLNPCVYIY 44
            +VMKL KSLYGL+Q P N+     + + EIGF +L  +PCVY+Y
Sbjct: 1032 LVMKLKKSLYGLKQSPRNFGNAFAKGIKEIGFTALLSDPCVYVY 1075          
BLAST of mRNA_H-elongata_contig17599.4593.1 vs. uniprot
Match: A0A2P4X4H2_9STRA (Integrase catalytic core protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X4H2_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 4.060e-6
Identity = 20/40 (50.00%), Postives = 29/40 (72.50%), Query Frame = 0
Query:    3 MKLLKSLYGLRQCPTNWRGTVHEHLAEIGFISLKLNPCVY 42
            ++LLKSLYGL+Q    W   +H +L E+GF+  KL+PC+Y
Sbjct:  123 LRLLKSLYGLKQSGKLWNDEIHNYLLELGFMRSKLDPCLY 162          
BLAST of mRNA_H-elongata_contig17599.4593.1 vs. uniprot
Match: A0A6H5KFG1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFG1_9PHAE)

HSP 1 Score: 50.1 bits (118), Expect = 8.490e-6
Identity = 23/44 (52.27%), Postives = 30/44 (68.18%), Query Frame = 0
Query:    1 MVMKLLKSLYGLRQCPTNWRGTVHEHLAEIGFISLKLNPCVYIY 44
            +VMKL KSLYGL+Q P N+     +   EIGF +L  +PCVY+Y
Sbjct:   48 LVMKLKKSLYGLKQSPRNFGNAFAKGNKEIGFTALLSDPCVYVY 91          
BLAST of mRNA_H-elongata_contig17599.4593.1 vs. uniprot
Match: A0A6H5L4S3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4S3_9PHAE)

HSP 1 Score: 49.3 bits (116), Expect = 9.170e-6
Identity = 22/44 (50.00%), Postives = 31/44 (70.45%), Query Frame = 0
Query:    1 MVMKLLKSLYGLRQCPTNWRGTVHEHLAEIGFISLKLNPCVYIY 44
            +VMKL KSLYGL+Q P N+   V + + +IGF +L  +PCV +Y
Sbjct:   35 LVMKLKKSLYGLKQSPRNFGNAVAKGIKDIGFTALLSDPCVCVY 78          
BLAST of mRNA_H-elongata_contig17599.4593.1 vs. uniprot
Match: A0A6G0WHK2_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WHK2_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 1.260e-5
Identity = 21/47 (44.68%), Postives = 30/47 (63.83%), Query Frame = 0
Query:    2 VMKLLKSLYGLRQCPTNWRGTVHEHLAEIGFISLKLNPCVYIYSENE 48
            V+KL KSLYGL+Q P  W  T+   +  IGF+  K + C+YI  ++E
Sbjct:  190 VLKLKKSLYGLKQAPRLWNQTIDGFMLSIGFVKSKADHCIYIKRQDE 236          
BLAST of mRNA_H-elongata_contig17599.4593.1 vs. uniprot
Match: A0A6G0WGW1_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WGW1_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 1.750e-5
Identity = 20/46 (43.48%), Postives = 30/46 (65.22%), Query Frame = 0
Query:    3 MKLLKSLYGLRQCPTNWRGTVHEHLAEIGFISLKLNPCVYIYSENE 48
            +K+LKSLYGLRQ P  W   + + L   GF++   +PC+YIY+  +
Sbjct:  165 LKVLKSLYGLRQSPRCWNTLLDKTLKTFGFVAAPSDPCLYIYNSGD 210          
BLAST of mRNA_H-elongata_contig17599.4593.1 vs. uniprot
Match: A0A6G0WTV0_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WTV0_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 3.290e-5
Identity = 20/46 (43.48%), Postives = 30/46 (65.22%), Query Frame = 0
Query:    3 MKLLKSLYGLRQCPTNWRGTVHEHLAEIGFISLKLNPCVYIYSENE 48
            +KLLKSLYGLRQ P  W   + + L   GF++   +PC+YI++  +
Sbjct:  703 LKLLKSLYGLRQSPRCWNTLLDKTLKTFGFVAAPSDPCLYIHNSGD 748          
BLAST of mRNA_H-elongata_contig17599.4593.1 vs. uniprot
Match: A0A6G0WM98_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WM98_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 4.490e-5
Identity = 20/47 (42.55%), Postives = 27/47 (57.45%), Query Frame = 0
Query:    2 VMKLLKSLYGLRQCPTNWRGTVHEHLAEIGFISLKLNPCVYIYSENE 48
            ++KL KSLYGLRQ P  W   +   L + GF     +PC+Y+Y   E
Sbjct:  443 ILKLKKSLYGLRQSPRCWNSLLDSTLKQFGFKPAASDPCIYVYGHME 489          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17599.4593.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5JVC8_9PHAE1.500e-652.27Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2P4XQH3_9STRA1.940e-652.50Integrase catalytic core protein n=1 Tax=Phytophth... [more]
A0A6H5KY84_9PHAE1.960e-652.27Integrase catalytic domain-containing protein n=1 ... [more]
A0A2P4X4H2_9STRA4.060e-650.00Integrase catalytic core protein n=1 Tax=Phytophth... [more]
A0A6H5KFG1_9PHAE8.490e-652.27Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L4S3_9PHAE9.170e-650.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6G0WHK2_9STRA1.260e-544.68Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6G0WGW1_9STRA1.750e-543.48Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6G0WTV0_9STRA3.290e-543.48Integrase catalytic domain-containing protein n=1 ... [more]
A0A6G0WM98_9STRA4.490e-542.55Reverse transcriptase Ty1/copia-type domain-contai... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 2..45
e-value: 7.6E-7
score: 29.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17599contigH-elongata_contig17599:1774..1917 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17599.4593.1mRNA_H-elongata_contig17599.4593.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig17599 1774..1917 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig17599.4593.1 ID=prot_H-elongata_contig17599.4593.1|Name=mRNA_H-elongata_contig17599.4593.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=48bp
MVMKLLKSLYGLRQCPTNWRGTVHEHLAEIGFISLKLNPCVYIYSENE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2