mRNA_H-elongata_contig17529.4568.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17529.4568.1
Unique NamemRNA_H-elongata_contig17529.4568.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig17529.4568.1 vs. uniprot
Match: D8LEX3_ECTSI (PRA1 family protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEX3_ECTSI)

HSP 1 Score: 234 bits (597), Expect = 1.010e-74
Identity = 123/201 (61.19%), Postives = 149/201 (74.13%), Query Frame = 3 
Query:   69 EPELRRRPIASEGREAESSWANVEERGDPKDVVSAVLSELGAQLQAFLGELRLGEIKPWGDFFARFKAPKTWDTKVLDERFTTNFLHYRGNYSLIAAILIVVGIVTHPVVLVALLSCALLVTFLFPVGDHPRIVRAWGRTLNRSERLMTVVIGVACILFLSGAWYILIFYGGLTVFLCMVHAIFRPRTISSKAGRVAAEAQ 671
            EP+LRRRP+ S  R +     NV  +     V  AVLSELGA ++ F   LRL E+K WG+FFARFKAP+ W+TKVLDER TTNFLHYRGNYS++AA L+VVGI+++P VL+ALL CALL+TFLFP G+  R VR   RTL R ERL   VIG +CIL L+GAWYIL+FYGG  V LC++H +FRPR+I SK  R AAEAQ
Sbjct:    3 EPQLRRRPVGSGSRGSAPPRPNVANQNQA--VALAVLSELGAMMELFFKGLRLKEMKGWGEFFARFKAPRAWNTKVLDERLTTNFLHYRGNYSVVAAGLLVVGIISNPYVLLALLCCALLLTFLFPTGEPRRAVRVGDRTLERQERLAAAVIGASCILGLTGAWYILLFYGGAGVLLCLLHGVFRPRSIGSKTSRAAAEAQ 201
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BLAST of mRNA_H-elongata_contig17529.4568.1 vs. uniprot
Match: A0A835Z7M0_9STRA (PRA1 family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7M0_9STRA)

HSP 1 Score: 118 bits (296), Expect = 2.680e-29
Identity = 71/175 (40.57%), Postives = 101/175 (57.71%), Query Frame = 3 
Query:  150 DPKDVVSAVLSELGAQLQAFLGELRLGEIKPWGDFFARFKAPKTWDTKVLDERFTTNFLHYRGNYSLIAAILIVVGIVTHP-VVLVALLSCALLVTFLFPVGDHPRIVRAWGRTLNRSERLMTVVIGVACILFLSGAWYILIFYGGLTVFLCMVHAIFRPRTISSKAGRVAAEAQ 671
            DP   +   L  + ++LQ+    L    ++PWG+FF +FK P+ W  +VLDER TTN LHYRGNY  +    I+V IV+ P ++LVA  S ALLV FLFP     R V   GR ++  ER    ++ +  +L  +GA   L++  GL    C+ HA+FRPR + SK  R+  EA+
Sbjct:   23 DPGSGIMGELQSIASELQS----LSWRNMRPWGEFFEQFKPPRAWTKEVLDERITTNMLHYRGNYCFVVFGSILVFIVSSPALLLVAAASLALLV-FLFPTETSGRAVVVSGRAVSAPERRFIAIVLILTLLATTGAAATLLYASGLAAATCLAHAVFRPRNLKSKFNRLQEEAR 192
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BLAST of mRNA_H-elongata_contig17529.4568.1 vs. uniprot
Match: A0A482SWI0_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SWI0_9ARCH)

HSP 1 Score: 81.6 bits (200), Expect = 2.810e-15
Identity = 49/142 (34.51%), Postives = 86/142 (60.56%), Query Frame = 3 
Query:  231 EIKPWGDFFARFKAPKTWDTKVLDERFTTNFLHYRGNYSLIAAILIVVGIVTHPVVLVALLSCALLVTFLFPVGDHPRIVRAWGRTLNRSERLMTVVIGVACILFLSGAWYILIFYGGLTVFLCMVHAIFRPRTISSKAGRV 656
            E+KPW +FFA FK P+ +D++ L++R TTNFLHYR NY  I+  ++++ I+T+PV++++ ++   + T++  V   P I+  +       + L   +   A ILF +G    L +     + +C +H + RPR++SSKA R+
Sbjct:   32 EMKPWSEFFATFKPPQ-FDSRHLEQRITTNFLHYRSNYLAISLGILILQILTNPVIILSSVAIFGICTYVLQVHRKPFIIGDFSFDGVGKQYLCAGL--SAIILFATGTVVKLCWCLFYIILVCGIHMLLRPRSVSSKANRM 170
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BLAST of mRNA_H-elongata_contig17529.4568.1 vs. uniprot
Match: A0A316UJP3_9BASI (PRA1 family protein n=1 Tax=Jaminaea rosea TaxID=1569628 RepID=A0A316UJP3_9BASI)

HSP 1 Score: 52.8 bits (125), Expect = 4.130e-5
Identity = 45/168 (26.79%), Postives = 77/168 (45.83%), Query Frame = 3 
Query:  165 VSAVLSELGAQLQAFLGELRLGEIKPWGDFFARFKAPKTWDTKVLDERFTTNFLHYRGNYSLIAAILIVVGIVTHPVVLVALLSCALLVTFLFPVGDHPRIVRAWGRTLNRSERLMT--------VVIGVACILFLSGAWYILIFYGGLTVFLCMVHAIFRPRTISSK 644
            + + +  L   L+    + RL  ++P G+FF   +  +  D     +R T N  H+  NY ++  +L V G++T P++LVA+          F VG    + R     L   E ++T        VV+GV  + F S  + +L +  G + FL + HA F    +SS+
Sbjct:    5 ILSTMMTLPQTLKGIFTKERLSSLRPIGEFFDYQRISRPQDLNEATQRITYNTRHFSANYLVLIGLLAVYGLLTSPLLLVAIA---------FLVGSFAAVNRFAPEPLQVGEHVVTQKSLYTGVVVVGVILLWFAS-PFGLLFWLIGSSAFLVLGHAAFIEPPVSSE 162
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BLAST of mRNA_H-elongata_contig17529.4568.1 vs. uniprot
Match: A0A061H9N2_9BASI (PRA1 family protein n=2 Tax=Pseudozyma flocculosa TaxID=84751 RepID=A0A061H9N2_9BASI)

HSP 1 Score: 52.4 bits (124), Expect = 5.510e-5
Identity = 44/153 (28.76%), Postives = 73/153 (47.71%), Query Frame = 3 
Query:  210 LGELRLGEIKPWGDFFARFKAPKTWDTKVLDERFTTNFLHYRGNYSLIAAILIVVGIVTHPVVLVALLSCALLVTFLFPVGDHPRIVRAWGRTLNRSERLMT--------VVIGVACILFLSGAWYILIFYGGLTVFLCMVHAIFRPRTISSK 644
            L + RL  ++P G+FF   +  +  DT    +R T N  H+ GNY+++ A L V G++T P++LVA+          F VG    I R     +   E ++T         VIG+  +L+ +    +  +  G + FL + HA F    +SS+
Sbjct:   18 LRQERLSSLRPLGEFFDHQRISRPQDTNEAFQRITYNTRHFSGNYAVVIACLAVYGLLTSPILLVAIF---------FLVGGFWAINRFAPEPMQVGEHVVTQKSLYTGLFVIGLP-LLWWASPVALFFWLVGSSAFLVLGHAAFIEPPVSSE 160
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17529.4568.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LEX3_ECTSI1.010e-7461.19PRA1 family protein n=2 Tax=Ectocarpus TaxID=2879 ... [more]
A0A835Z7M0_9STRA2.680e-2940.57PRA1 family protein n=1 Tax=Tribonema minus TaxID=... [more]
A0A482SWI0_9ARCH2.810e-1534.51Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A316UJP3_9BASI4.130e-526.79PRA1 family protein n=1 Tax=Jaminaea rosea TaxID=1... [more]
A0A061H9N2_9BASI5.510e-528.76PRA1 family protein n=2 Tax=Pseudozyma flocculosa ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17529contigH-elongata_contig17529:4359..6365 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score63.5
Seed ortholog evalue1.3e-07
Seed eggNOG ortholog29730.Gorai.004G234300.1
KEGG koko:K20359
KEGG TC9.A.49.1
EggNOG free text desc.PRA1 family protein
EggNOG OGs388G9@33090,3GPHV@35493,KOG3142@1,KOG3142@2759
COG Functional cat.U
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPrenylated rab acceptor PRA1
Ec32 orthologEc-21_005900.1
Exons5
Model size671
Cds size612
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17529.4568.1prot_H-elongata_contig17529.4568.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17529 4418..6365 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930016.7198696-UTR-H-elongata_contig17529:4358..44171622930016.7198696-UTR-H-elongata_contig17529:4358..4417Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17529 4359..4417 +
1691679247.3105836-UTR-H-elongata_contig17529:4358..44171691679247.3105836-UTR-H-elongata_contig17529:4358..4417Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17529 4359..4417 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930016.7364557-CDS-H-elongata_contig17529:4417..45811622930016.7364557-CDS-H-elongata_contig17529:4417..4581Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17529 4418..4581 +
1691679247.3218591-CDS-H-elongata_contig17529:4417..45811691679247.3218591-CDS-H-elongata_contig17529:4417..4581Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17529 4418..4581 +
1622930016.7556574-CDS-H-elongata_contig17529:4931..50131622930016.7556574-CDS-H-elongata_contig17529:4931..5013Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17529 4932..5013 +
1691679247.331352-CDS-H-elongata_contig17529:4931..50131691679247.331352-CDS-H-elongata_contig17529:4931..5013Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17529 4932..5013 +
1622930016.7709954-CDS-H-elongata_contig17529:5314..53881622930016.7709954-CDS-H-elongata_contig17529:5314..5388Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17529 5315..5388 +
1691679247.3512106-CDS-H-elongata_contig17529:5314..53881691679247.3512106-CDS-H-elongata_contig17529:5314..5388Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17529 5315..5388 +
1622930016.7843533-CDS-H-elongata_contig17529:5667..58131622930016.7843533-CDS-H-elongata_contig17529:5667..5813Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17529 5668..5813 +
1691679247.370249-CDS-H-elongata_contig17529:5667..58131691679247.370249-CDS-H-elongata_contig17529:5667..5813Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17529 5668..5813 +
1622930016.803455-CDS-H-elongata_contig17529:6219..63651622930016.803455-CDS-H-elongata_contig17529:6219..6365Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17529 6220..6365 +
1691679247.3783882-CDS-H-elongata_contig17529:6219..63651691679247.3783882-CDS-H-elongata_contig17529:6219..6365Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17529 6220..6365 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17529.4568.1

>prot_H-elongata_contig17529.4568.1 ID=prot_H-elongata_contig17529.4568.1|Name=mRNA_H-elongata_contig17529.4568.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=204bp
MTREPELRRRPIASEGREAESSWANVEERGDPKDVVSAVLSELGAQLQAF
LGELRLGEIKPWGDFFARFKAPKTWDTKVLDERFTTNFLHYRGNYSLIAA
ILIVVGIVTHPVVLVALLSCALLVTFLFPVGDHPRIVRAWGRTLNRSERL
MTVVIGVACILFLSGAWYILIFYGGLTVFLCMVHAIFRPRTISSKAGRVA
AEAQ
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mRNA from alignment at H-elongata_contig17529:4359..6365+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17529.4568.1 ID=mRNA_H-elongata_contig17529.4568.1|Name=mRNA_H-elongata_contig17529.4568.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2007bp|location=Sequence derived from alignment at H-elongata_contig17529:4359..6365+ (Himanthalia elongata Himel1 dioecious)
TTCAACACTACGAATTGTCGATCTTCTCTCTTGCACGGGTCCGTTGAAGT
ACAGCGAATATGACAAGGGAACCGGAACTAAGGAGACGTCCAATCGCCAG
TGAGGGGCGTGAAGCCGAATCATCGTGGGCTAATGTTGAGGAACGAGGAG
ATCCCAAGGACGTTGTCTCCGCCGTGTTGTCTGAGCTGGGTGCTCAGCTG
CAGGCCTTCCTTGGCGAGCTTAGGTATGGTGAGCCGGATGGCAACCATGG
CTACAATTAGAAGCATGCAGAACGCAGGTGCTTGGAACGATGTGGAATTT
ATTTCGAGACGACCGTTCGCTATTTAATGTGAGAGAACGTGGTCATCGAC
TGACGTTCGAAGGGTTTGAATGAGTTTTTGTTTTCTAGAAAAAATGCCCA
GAAGACTCTAGAACAGTCATCAACCGAGACCCTTTTCTAACCTTCCGATG
CAGCCGACATAATTTCCAAGAAAAAAACACGACTATACCAGCTTACCACG
CTTTACCCATTTTTTGATGTGCTGAATTATTCTCGTGATGGTCGTCCTCA
ACGGTCTGATGTGGCTCGACCAGACTCGGCGAGATCAAGCCTTGGGGCGA
CTTCTTCGCTCGATTCAAGGCCCCCAAAACGTGGGACACCAAGGTCCTTG
ACGAGGTGAAAAGTGAAAACTGAAACCGCACGATTCCTTTGGTGCGGAAT
TCCGCTGCACAAGCCGAAGACATAACCTCAAAATGAACCGTCTCTCTATG
TTGCACTCGGCAGTAGCTATGCTCTACTGTCTAAATCTCTTGAGCTTTAT
GCCTTCGAGGATGATCAATAGATTGATCTGGCCGCACCTTGATCTGGCCG
CACCAACGCAGCCACGGTTTGGTGCGTGCGATGCGAGTCGGCTCGATTTT
TCTTTCCAACTGCTCCTGCCTATCGCCTACTTGCACCCTCCCGCGTTTTT
CGCCAGAGGTTCACCACCAACTTCCTCCACTACCGGGGCAACTATAGCTT
GATCGCTGCGATCTTGATCGTCGTGGGCATGTGAGCGACTACGCAAGCGA
GACGCACAGCTCGTGATTGGTTCAAGCAATAGCGAAAATATCCGTCAGGG
GTCTCGCGCTGCTGCCTCTCGCAAGCACGAGTCTGTGTCGCCAAAACGAC
AAACCTCTAGGCATGTACTTGTACGAACGCAGATTACCTCCTCGTGACTC
GTGTTGAGAACAACCGGTCCATGCTATGCACTCGTAGTTCTTGTTTAATT
TTTCTCACTATCCTCAACCTTCTTTATTCGATTCCGCTGCATGCGCCATG
CTGCACCAGCGTGACGCATCCGGTCGTGTTGGTTGCGTTGCTGAGCTGCG
CTCTGCTCGTGACGTTCCTATTTCCCGTCGGCGACCACCCTCGCATCGTC
CGGGCATGGGGACGCACCCTGAACCGCTCGGAACGATTGATGACAGTCGT
GATCGGTAGGTGGTGTACCCGCAGCCACCAATCACGAAGTACTATAGCCA
CGCGTTCGTCAATCGCGTTTGTCCTTCGGTAACACCCGGTATAGTTTGAT
GCTGCATTTATATTGGGGGTGCCTAGCGTCCGGGTTCTCGTTTTGCCTCT
ACTGTTCTGAAGGAATGGCGAAGTAGGTATCGGTGCTCTTGGCGCACGGC
GCCCCTCGTTACTGGCTGTGACACTGCAGTGACTGAACCGCCTTGGTGCC
GTGGACGTCGCGGACGTGAACCAAGCGGGCTTTTCGGAGACTCGGTAGCT
CGTGCTCCGTTTGCTGACCCTTAGAAAATCTGCCAAGCTTTCTTGCTCTT
CGTAGTACACTGCTCCTCGCGATCAATCTCGCTGCCGCCGCCGCTGCTGA
AATTTCCTTAGGCGTTGCTTGCATCCTTTTTCTGAGCGGAGCCTGGTACA
TTCTAATCTTCTACGGGGGGTTGACAGTATTCCTGTGCATGGTTCATGCG
ATTTTTCGGCCGCGGACGATCAGCAGCAAGGCCGGTCGGGTAGCGGCAGA
AGCGCAG
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Coding sequence (CDS) from alignment at H-elongata_contig17529:4359..6365+

>mRNA_H-elongata_contig17529.4568.1 ID=mRNA_H-elongata_contig17529.4568.1|Name=mRNA_H-elongata_contig17529.4568.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1224bp|location=Sequence derived from alignment at H-elongata_contig17529:4359..6365+ (Himanthalia elongata Himel1 dioecious)
ATGACAAGGGAACCGGAACTAAGGAGACGTCCAATCGCCAGTGAGGGGCG
TGAAGCCGAATCATCGTGGGCTAATGTTGAGGAACGAGGAGATCCCAAGG
ACGTTGTCTCCGCCGTGTTGTCTGAGCTGGGTGCTCAGCTGCAGGCCTTC
CTTGGCGAGCTTAGATGACAAGGGAACCGGAACTAAGGAGACGTCCAATC
GCCAGTGAGGGGCGTGAAGCCGAATCATCGTGGGCTAATGTTGAGGAACG
AGGAGATCCCAAGGACGTTGTCTCCGCCGTGTTGTCTGAGCTGGGTGCTC
AGCTGCAGGCCTTCCTTGGCGAGCTTAGACTCGGCGAGATCAAGCCTTGG
GGCGACTTCTTCGCTCGATTCAAGGCCCCCAAAACGTGGGACACCAAGGT
CCTTGACGAGACTCGGCGAGATCAAGCCTTGGGGCGACTTCTTCGCTCGA
TTCAAGGCCCCCAAAACGTGGGACACCAAGGTCCTTGACGAGAGGTTCAC
CACCAACTTCCTCCACTACCGGGGCAACTATAGCTTGATCGCTGCGATCT
TGATCGTCGTGGGCATAGGTTCACCACCAACTTCCTCCACTACCGGGGCA
ACTATAGCTTGATCGCTGCGATCTTGATCGTCGTGGGCATCGTGACGCAT
CCGGTCGTGTTGGTTGCGTTGCTGAGCTGCGCTCTGCTCGTGACGTTCCT
ATTTCCCGTCGGCGACCACCCTCGCATCGTCCGGGCATGGGGACGCACCC
TGAACCGCTCGGAACGATTGATGACAGTCGTGATCGCGTGACGCATCCGG
TCGTGTTGGTTGCGTTGCTGAGCTGCGCTCTGCTCGTGACGTTCCTATTT
CCCGTCGGCGACCACCCTCGCATCGTCCGGGCATGGGGACGCACCCTGAA
CCGCTCGGAACGATTGATGACAGTCGTGATCGGCGTTGCTTGCATCCTTT
TTCTGAGCGGAGCCTGGTACATTCTAATCTTCTACGGGGGGTTGACAGTA
TTCCTGTGCATGGTTCATGCGATTTTTCGGCCGCGGACGATCAGCAGCAA
GGCCGGTCGGGTAGCGGCAGAAGCGCAGGCGTTGCTTGCATCCTTTTTCT
GAGCGGAGCCTGGTACATTCTAATCTTCTACGGGGGGTTGACAGTATTCC
TGTGCATGGTTCATGCGATTTTTCGGCCGCGGACGATCAGCAGCAAGGCC
GGTCGGGTAGCGGCAGAAGCGCAG
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