prot_H-elongata_contig17529.4568.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig17529.4568.1
Unique Nameprot_H-elongata_contig17529.4568.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length204
Homology
BLAST of mRNA_H-elongata_contig17529.4568.1 vs. uniprot
Match: D8LEX3_ECTSI (PRA1 family protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEX3_ECTSI)

HSP 1 Score: 233 bits (595), Expect = 9.960e-75
Identity = 123/201 (61.19%), Postives = 149/201 (74.13%), Query Frame = 0
Query:    4 EPELRRRPIASEGREAESSWANVEERGDPKDVVSAVLSELGAQLQAFLGELRLGEIKPWGDFFARFKAPKTWDTKVLDERFTTNFLHYRGNYSLIAAILIVVGIVTHPVVLVALLSCALLVTFLFPVGDHPRIVRAWGRTLNRSERLMTVVIGVACILFLSGAWYILIFYGGLTVFLCMVHAIFRPRTISSKAGRVAAEAQ 204
            EP+LRRRP+ S  R +     NV  +     V  AVLSELGA ++ F   LRL E+K WG+FFARFKAP+ W+TKVLDER TTNFLHYRGNYS++AA L+VVGI+++P VL+ALL CALL+TFLFP G+  R VR   RTL R ERL   VIG +CIL L+GAWYIL+FYGG  V LC++H +FRPR+I SK  R AAEAQ
Sbjct:    3 EPQLRRRPVGSGSRGSAPPRPNVANQNQA--VALAVLSELGAMMELFFKGLRLKEMKGWGEFFARFKAPRAWNTKVLDERLTTNFLHYRGNYSVVAAGLLVVGIISNPYVLLALLCCALLLTFLFPTGEPRRAVRVGDRTLERQERLAAAVIGASCILGLTGAWYILLFYGGAGVLLCLLHGVFRPRSIGSKTSRAAAEAQ 201          
BLAST of mRNA_H-elongata_contig17529.4568.1 vs. uniprot
Match: A0A835Z7M0_9STRA (PRA1 family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7M0_9STRA)

HSP 1 Score: 118 bits (296), Expect = 1.510e-29
Identity = 71/175 (40.57%), Postives = 101/175 (57.71%), Query Frame = 0
Query:   31 DPKDVVSAVLSELGAQLQAFLGELRLGEIKPWGDFFARFKAPKTWDTKVLDERFTTNFLHYRGNYSLIAAILIVVGIVTHP-VVLVALLSCALLVTFLFPVGDHPRIVRAWGRTLNRSERLMTVVIGVACILFLSGAWYILIFYGGLTVFLCMVHAIFRPRTISSKAGRVAAEAQ 204
            DP   +   L  + ++LQ+    L    ++PWG+FF +FK P+ W  +VLDER TTN LHYRGNY  +    I+V IV+ P ++LVA  S ALLV FLFP     R V   GR ++  ER    ++ +  +L  +GA   L++  GL    C+ HA+FRPR + SK  R+  EA+
Sbjct:   23 DPGSGIMGELQSIASELQS----LSWRNMRPWGEFFEQFKPPRAWTKEVLDERITTNMLHYRGNYCFVVFGSILVFIVSSPALLLVAAASLALLV-FLFPTETSGRAVVVSGRAVSAPERRFIAIVLILTLLATTGAAATLLYASGLAAATCLAHAVFRPRNLKSKFNRLQEEAR 192          
BLAST of mRNA_H-elongata_contig17529.4568.1 vs. uniprot
Match: A0A482SWI0_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SWI0_9ARCH)

HSP 1 Score: 81.6 bits (200), Expect = 1.790e-15
Identity = 49/142 (34.51%), Postives = 86/142 (60.56%), Query Frame = 0
Query:   58 EIKPWGDFFARFKAPKTWDTKVLDERFTTNFLHYRGNYSLIAAILIVVGIVTHPVVLVALLSCALLVTFLFPVGDHPRIVRAWGRTLNRSERLMTVVIGVACILFLSGAWYILIFYGGLTVFLCMVHAIFRPRTISSKAGRV 199
            E+KPW +FFA FK P+ +D++ L++R TTNFLHYR NY  I+  ++++ I+T+PV++++ ++   + T++  V   P I+  +       + L   +   A ILF +G    L +     + +C +H + RPR++SSKA R+
Sbjct:   32 EMKPWSEFFATFKPPQ-FDSRHLEQRITTNFLHYRSNYLAISLGILILQILTNPVIILSSVAIFGICTYVLQVHRKPFIIGDFSFDGVGKQYLCAGL--SAIILFATGTVVKLCWCLFYIILVCGIHMLLRPRSVSSKANRM 170          
BLAST of mRNA_H-elongata_contig17529.4568.1 vs. uniprot
Match: A0A316UJP3_9BASI (PRA1 family protein n=1 Tax=Jaminaea rosea TaxID=1569628 RepID=A0A316UJP3_9BASI)

HSP 1 Score: 52.8 bits (125), Expect = 3.180e-5
Identity = 45/168 (26.79%), Postives = 77/168 (45.83%), Query Frame = 0
Query:   36 VSAVLSELGAQLQAFLGELRLGEIKPWGDFFARFKAPKTWDTKVLDERFTTNFLHYRGNYSLIAAILIVVGIVTHPVVLVALLSCALLVTFLFPVGDHPRIVRAWGRTLNRSERLMT--------VVIGVACILFLSGAWYILIFYGGLTVFLCMVHAIFRPRTISSK 195
            + + +  L   L+    + RL  ++P G+FF   +  +  D     +R T N  H+  NY ++  +L V G++T P++LVA+          F VG    + R     L   E ++T        VV+GV  + F S  + +L +  G + FL + HA F    +SS+
Sbjct:    5 ILSTMMTLPQTLKGIFTKERLSSLRPIGEFFDYQRISRPQDLNEATQRITYNTRHFSANYLVLIGLLAVYGLLTSPLLLVAIA---------FLVGSFAAVNRFAPEPLQVGEHVVTQKSLYTGVVVVGVILLWFAS-PFGLLFWLIGSSAFLVLGHAAFIEPPVSSE 162          
BLAST of mRNA_H-elongata_contig17529.4568.1 vs. uniprot
Match: A0A061H9N2_9BASI (PRA1 family protein n=2 Tax=Pseudozyma flocculosa TaxID=84751 RepID=A0A061H9N2_9BASI)

HSP 1 Score: 52.4 bits (124), Expect = 4.250e-5
Identity = 44/153 (28.76%), Postives = 73/153 (47.71%), Query Frame = 0
Query:   51 LGELRLGEIKPWGDFFARFKAPKTWDTKVLDERFTTNFLHYRGNYSLIAAILIVVGIVTHPVVLVALLSCALLVTFLFPVGDHPRIVRAWGRTLNRSERLMT--------VVIGVACILFLSGAWYILIFYGGLTVFLCMVHAIFRPRTISSK 195
            L + RL  ++P G+FF   +  +  DT    +R T N  H+ GNY+++ A L V G++T P++LVA+          F VG    I R     +   E ++T         VIG+  +L+ +    +  +  G + FL + HA F    +SS+
Sbjct:   18 LRQERLSSLRPLGEFFDHQRISRPQDTNEAFQRITYNTRHFSGNYAVVIACLAVYGLLTSPILLVAIF---------FLVGGFWAINRFAPEPMQVGEHVVTQKSLYTGLFVIGLP-LLWWASPVALFFWLVGSSAFLVLGHAAFIEPPVSSE 160          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17529.4568.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LEX3_ECTSI9.960e-7561.19PRA1 family protein n=2 Tax=Ectocarpus TaxID=2879 ... [more]
A0A835Z7M0_9STRA1.510e-2940.57PRA1 family protein n=1 Tax=Tribonema minus TaxID=... [more]
A0A482SWI0_9ARCH1.790e-1534.51Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A316UJP3_9BASI3.180e-526.79PRA1 family protein n=1 Tax=Jaminaea rosea TaxID=1... [more]
A0A061H9N2_9BASI4.250e-528.76PRA1 family protein n=2 Tax=Pseudozyma flocculosa ... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004895Prenylated rab acceptor PRA1PFAMPF03208PRA1coord: 56..194
e-value: 6.1E-30
score: 103.7
IPR004895Prenylated rab acceptor PRA1PANTHERPTHR19317PRENYLATED RAB ACCEPTOR 1-RELATEDcoord: 55..189
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 97..130
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 150..183
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 131..149
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 184..204
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..96
NoneNo IPR availableTMHMMTMhelixcoord: 88..107
NoneNo IPR availableTMHMMTMhelixcoord: 112..131
NoneNo IPR availableTMHMMTMhelixcoord: 152..174

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17529contigH-elongata_contig17529:4418..6365 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17529.4568.1mRNA_H-elongata_contig17529.4568.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig17529 4359..6365 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig17529.4568.1 ID=prot_H-elongata_contig17529.4568.1|Name=mRNA_H-elongata_contig17529.4568.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=204bp
MTREPELRRRPIASEGREAESSWANVEERGDPKDVVSAVLSELGAQLQAF
LGELRLGEIKPWGDFFARFKAPKTWDTKVLDERFTTNFLHYRGNYSLIAA
ILIVVGIVTHPVVLVALLSCALLVTFLFPVGDHPRIVRAWGRTLNRSERL
MTVVIGVACILFLSGAWYILIFYGGLTVFLCMVHAIFRPRTISSKAGRVA
AEAQ
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004895Prenylated_rab_accept_PRA1