mRNA_H-elongata_contig17529.4567.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17529.4567.1
Unique NamemRNA_H-elongata_contig17529.4567.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig17529.4567.1 vs. uniprot
Match: A0A6H5KE80_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE80_9PHAE)

HSP 1 Score: 341 bits (874), Expect = 6.070e-112
Identity = 174/200 (87.00%), Postives = 185/200 (92.50%), Query Frame = 2 
Query:  323 MSRRTSSLDSKSREVKVVLLGDTGVGKSSLVHRFVTNNFKPYSESTIGASFMSKMIMVDGAPMKFQIWDTAGQEKYHSLAPMYYRGAAAAIVVYDITKMHSFRTLKEWINELQAQGPQDIAIAIAGNKRDLESEREVESSVAKAYAEEIGAMFVETSAKMDTHVQDVFVELSKRLPKRQPAPHVAADTLNFDSGGGSSCC 922
            MSRR  S+DS+SREVKVVLLGDTGVGKSSLVHRFVTNNFKPYSESTIGASFMSKMIMVDG+PMKFQIWDTAGQEKYHSLAPMYYRGA AAIVVYDITKMHSFRTLKEWINELQAQGPQDIAIA+AGNKRDLES+REVESS+A+AYA+EIGAMFVETSAK  THVQD+FVELSKRLPKR+P P  +   LN DS G SS C
Sbjct:    1 MSRR-GSMDSRSREVKVVLLGDTGVGKSSLVHRFVTNNFKPYSESTIGASFMSKMIMVDGSPMKFQIWDTAGQEKYHSLAPMYYRGAGAAIVVYDITKMHSFRTLKEWINELQAQGPQDIAIAVAGNKRDLESQREVESSMAQAYADEIGAMFVETSAKDATHVQDMFVELSKRLPKREPLPPASGVDLNLDSSGASSSC 199
[Close]
BLAST of mRNA_H-elongata_contig17529.4567.1 vs. uniprot
Match: A0A7S2SUM8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SUM8_9STRA)

HSP 1 Score: 258 bits (659), Expect = 9.860e-80
Identity = 130/194 (67.01%), Postives = 162/194 (83.51%), Query Frame = 2 
Query:  347 DSKSREVKVVLLGDTGVGKSSLVHRFVTNNFKPYSESTIGASFMSKMIMVDGAPMKFQIWDTAGQEKYHSLAPMYYRGAAAAIVVYDITKMHSFRTLKEWINELQAQGPQDIAIAIAGNKRDLESEREVESSVAKAYAEEIGAMFVETSAKMDTHVQDVFVELSKRLPKRQPAPHVAADTLNFDSGGGSS--CC 922
            D ++REVKVVLLGDTGVGKSSLV RF+TN FK Y ESTIGASFMSK+IMVDG+P+KFQIWDTAGQEKYHSLAPMYY+GAAAAIVVYDITK  +F+TLK+W+ EL++QGP++I IA+AGNK DLESEREV+++ A++YA  IGA F+ETSAK   +V ++F  +SK+LP+++ A     + LN  +G GSS  CC
Sbjct:    6 DQRAREVKVVLLGDTGVGKSSLVLRFITNEFKQYQESTIGASFMSKLIMVDGSPIKFQIWDTAGQEKYHSLAPMYYKGAAAAIVVYDITKESTFQTLKDWVAELRSQGPENIVIAVAGNKSDLESEREVDTATAQSYAHSIGASFLETSAKTKANVDEIFSNISKQLPEQERAGQYH-NKLNLKAGKGSSGGCC 198
[Close]
BLAST of mRNA_H-elongata_contig17529.4567.1 vs. uniprot
Match: F0WNT1_9STRA (Rab5 family GTPase putative n=3 Tax=Albugo TaxID=65356 RepID=F0WNT1_9STRA)

HSP 1 Score: 257 bits (657), Expect = 1.960e-79
Identity = 133/194 (68.56%), Postives = 156/194 (80.41%), Query Frame = 2 
Query:  353 KSREVKVVLLGDTGVGKSSLVHRFVTNNFKPYSESTIGASFMSKMIMVDGAPMKFQIWDTAGQEKYHSLAPMYYRGAAAAIVVYDITKMHSFRTLKEWINELQAQGPQDIAIAIAGNKRDLESEREVESSVAKAYAEEIGAMFVETSAKMDTHVQDVFVELSKRLPKRQPAPHVAADTLNFDSGGG----SSCC 922
            K+REVKVVLLGDTGVGKSSLV RFVTNNF+PYSESTIGASFMSKMIMV+  P+K+QIWDTAGQEKYHSLAPMYYRGAAAAIVVYDIT+  S  TLK W+ EL+  GP++I IAIAGNK DLE +REV S+ AKAYA+EIGA+F+ETSAK DT+V D+F+ +SK+LP      +   + L  D  GG    + CC
Sbjct:    7 KAREVKVVLLGDTGVGKSSLVLRFVTNNFRPYSESTIGASFMSKMIMVENTPIKYQIWDTAGQEKYHSLAPMYYRGAAAAIVVYDITRKQSLATLKNWVKELKQLGPENIVIAIAGNKSDLEDKREVPSAQAKAYADEIGALFIETSAKEDTNVSDLFISISKQLPTAAAETNALPEIL--DPYGGVQQKNRCC 198
[Close]
BLAST of mRNA_H-elongata_contig17529.4567.1 vs. uniprot
Match: D8LEW7_ECTSI (Rab22, RAB family GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEW7_ECTSI)

HSP 1 Score: 253 bits (647), Expect = 7.470e-79
Identity = 127/135 (94.07%), Postives = 132/135 (97.78%), Query Frame = 2 
Query:  323 MSRRTSSLDSKSREVKVVLLGDTGVGKSSLVHRFVTNNFKPYSESTIGASFMSKMIMVDGAPMKFQIWDTAGQEKYHSLAPMYYRGAAAAIVVYDITKMHSFRTLKEWINELQAQGPQDIAIAIAGNKRDLESER 727
            MSRR  S+DS+SREVKVVLLGDTGVGKSSLVHRFVTNNFKPYSESTIGASFMSKMIMVDG+PMKFQIWDTAGQEKYHSLAPMYYRGA AAIVVYDITKMHSFRTLKEWINELQAQGPQDIAIA+AGNKRDLES+R
Sbjct:    1 MSRR-GSMDSRSREVKVVLLGDTGVGKSSLVHRFVTNNFKPYSESTIGASFMSKMIMVDGSPMKFQIWDTAGQEKYHSLAPMYYRGAGAAIVVYDITKMHSFRTLKEWINELQAQGPQDIAIAVAGNKRDLESQR 134
[Close]
BLAST of mRNA_H-elongata_contig17529.4567.1 vs. uniprot
Match: D0N0I0_PHYIT (Rab5 family GTPase, putative n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0N0I0_PHYIT)

HSP 1 Score: 255 bits (651), Expect = 1.640e-78
Identity = 130/195 (66.67%), Postives = 156/195 (80.00%), Query Frame = 2 
Query:  347 DSKSREVKVVLLGDTGVGKSSLVHRFVTNNFKPYSESTIGASFMSKMIMVDGAPMKFQIWDTAGQEKYHSLAPMYYRGAAAAIVVYDITKMHSFRTLKEWINELQAQGPQDIAIAIAGNKRDLESEREVESSVAKAYAEEIGAMFVETSAKMDTHVQDVFVELSKRLPKRQPAPHVAADTLNFDSGG---GSSCC 922
            +SK+REVKVVLLGDTGVGKSSLV RFVTNNF+PYSESTIGASFMSKMI+V+  P+K+QIWDTAGQEKYHSLAPMYYRGAAAAIVVYDIT+  S  TLK W+ EL+  GP +I IAIAGNK DLE +REV +S A+AYA EIGA+F+ETSAK DT+V D+F+++S+ LP      +   + ++   GG    S CC
Sbjct:    6 NSKAREVKVVLLGDTGVGKSSLVLRFVTNNFRPYSESTIGASFMSKMIVVNDTPIKYQIWDTAGQEKYHSLAPMYYRGAAAAIVVYDITRKQSLTTLKNWVKELKQLGPDNIVIAIAGNKSDLEEKREVPASQARAYAGEIGALFIETSAKEDTNVSDLFIQISQALPTASAESNALPEIVDPYGGGKKKSSGCC 200
[Close]
BLAST of mRNA_H-elongata_contig17529.4567.1 vs. uniprot
Match: K3X978_GLOUD (Uncharacterized protein n=22 Tax=Oomycota TaxID=4762 RepID=K3X978_GLOUD)

HSP 1 Score: 253 bits (646), Expect = 8.820e-78
Identity = 129/194 (66.49%), Postives = 154/194 (79.38%), Query Frame = 2 
Query:  350 SKSREVKVVLLGDTGVGKSSLVHRFVTNNFKPYSESTIGASFMSKMIMVDGAPMKFQIWDTAGQEKYHSLAPMYYRGAAAAIVVYDITKMHSFRTLKEWINELQAQGPQDIAIAIAGNKRDLESEREVESSVAKAYAEEIGAMFVETSAKMDTHVQDVFVELSKRLPKRQPAPHVAADTLNFDSGG---GSSCC 922
            SK+REVKVVLLGDTGVGKSSLV RFVTNNF+PYSESTIGASFMSKMI+V+  P+K+QIWDTAGQEKYHSLAPMYYRGAAAAIVVYDIT+  S  TLK W+ EL+  GP +I IAIAGNK DLE +REV +S A+AYAEEIGA+F+ETSAK D +V D+F+++S+ LP      +   + ++   GG      CC
Sbjct:    6 SKAREVKVVLLGDTGVGKSSLVLRFVTNNFRPYSESTIGASFMSKMIVVNDTPIKYQIWDTAGQEKYHSLAPMYYRGAAAAIVVYDITRKQSLTTLKNWVKELKQLGPDNIVIAIAGNKSDLEEKREVPASQARAYAEEIGALFIETSAKEDRNVSDLFIQISQALPTASNESNALPEIVDPYGGGKKKSGGCC 199
[Close]
BLAST of mRNA_H-elongata_contig17529.4567.1 vs. uniprot
Match: A0A067CI89_SAPPC (Uncharacterized protein n=7 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CI89_SAPPC)

HSP 1 Score: 245 bits (626), Expect = 7.800e-75
Identity = 126/193 (65.28%), Postives = 152/193 (78.76%), Query Frame = 2 
Query:  350 SKSREVKVVLLGDTGVGKSSLVHRFVTNNFKPYSESTIGASFMSKMIMVDGAPMKFQIWDTAGQEKYHSLAPMYYRGAAAAIVVYDITKMHSFRTLKEWINELQAQGPQDIAIAIAGNKRDLESEREVESSVAKAYAEEIGAMFVETSAKMDTHVQDVFVELSKRLPKRQPAPHVAADTLNFDSGGGSS--CC 922
            +K+REVKVVLLGDTGVGKSSLV RFVTNNF+PYSESTIGASFMSKM++V    +K+QIWDTAGQEKYHSLAPMYYRGAAAAIVVYDIT+  S +TLK W+ EL+  GP +I IAIAGNK DL+ +REV S  AKAYA+EIGA+F+ETSAK DT+V D+F  +S++LP      +   + ++   GG     CC
Sbjct:    5 TKAREVKVVLLGDTGVGKSSLVLRFVTNNFRPYSESTIGASFMSKMLLVGDQAIKYQIWDTAGQEKYHSLAPMYYRGAAAAIVVYDITRKQSLQTLKNWVKELKQLGPDNIVIAIAGNKSDLKDKREVSSETAKAYADEIGAVFIETSAKEDTNVSDLFKTISQQLPSPAGDNNALPEIVDPYGGGKKKGGCC 197
[Close]
BLAST of mRNA_H-elongata_contig17529.4567.1 vs. uniprot
Match: A0A7S1CIP5_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CIP5_9STRA)

HSP 1 Score: 244 bits (623), Expect = 3.490e-73
Identity = 119/167 (71.26%), Postives = 144/167 (86.23%), Query Frame = 2 
Query:  350 SKSREVKVVLLGDTGVGKSSLVHRFVTNNFKPYSESTIGASFMSKMIMVDGAPMKFQIWDTAGQEKYHSLAPMYYRGAAAAIVVYDITKMHSFRTLKEWINELQAQGPQDIAIAIAGNKRDLESEREVESSVAKAYAEEIGAMFVETSAKMDTHVQDVFVELSKRLP 850
            +++REVKVVLLGDTGVGKSSLV RFVTNNFKPYSESTIGASFM+KM+++D  P+K+QIWDTAGQEKYHSLAPMYYRGAAAAIVVYDIT+  SF TLK W+ EL+  GP+DI IAIAGNK DL  +REVE   A+ YA  IGA+++ETSAK D++V+ +FV+++ RLP
Sbjct:   87 AEAREVKVVLLGDTGVGKSSLVLRFVTNNFKPYSESTIGASFMAKMMIIDSTPIKYQIWDTAGQEKYHSLAPMYYRGAAAAIVVYDITRAASFATLKNWVRELKQLGPEDIVIAIAGNKSDLAPQREVEEEDAREYARSIGALYIETSAKTDSNVKQLFVDIAMRLP 253
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BLAST of mRNA_H-elongata_contig17529.4567.1 vs. uniprot
Match: A0A3R7AA57_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7AA57_9STRA)

HSP 1 Score: 247 bits (631), Expect = 5.860e-73
Identity = 128/202 (63.37%), Postives = 157/202 (77.72%), Query Frame = 2 
Query:  320 RMSRRTSSLDSKSREVKVVLLGDTGVGKSSLVHRFVTNNFKPYSESTIGASFMSKMIMVDGAPMKFQIWDTAGQEKYHSLAPMYYRGAAAAIVVYDITKMHSFRTLKEWINELQAQGPQDIAIAIAGNKRDLESEREVESSVAKAYAEEIGAMFVETSAKMDTHVQDVFVELSKRLPKRQPAPHVAADTLN-FDSGGGSSCC 922
            R++   S+  +K+REVKVVLLGDTGVGKSSLV RFVTNNF+PYSESTIGASFMSKM++V    +K+QIWDTAGQEKYHSLAPMYYRGAAAAIVVYDIT+  S  TLK W+ EL+  GP +I IAIAGNK DL+ +REV S+ AKAYA+EIGA+F+ETSAK DT+V D+F  +S++LP      H   + ++ + SG     C
Sbjct:  187 RLATNMSADGTKAREVKVVLLGDTGVGKSSLVLRFVTNNFRPYSESTIGASFMSKMLLVGDQAIKYQIWDTAGQEKYHSLAPMYYRGAAAAIVVYDITRKQSLVTLKNWVKELKQLGPDNIVIAIAGNKSDLDDKREVSSATAKAYADEIGAVFIETSAKEDTNVLDLFKTISQQLPSPAGDNHALPEIVDPYGSGKAKGGC 388
[Close]
BLAST of mRNA_H-elongata_contig17529.4567.1 vs. uniprot
Match: F0Y0I1_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y0I1_AURAN)

HSP 1 Score: 235 bits (600), Expect = 5.850e-71
Identity = 122/191 (63.87%), Postives = 143/191 (74.87%), Query Frame = 2 
Query:  350 SKSREVKVVLLGDTGVGKSSLVHRFVTNNFKPYSESTIGASFMSKMIMVDGAPMKFQIWDTAGQEKYHSLAPMYYRGAAAAIVVYDITKMHSFRTLKEWINELQAQGPQDIAIAIAGNKRDLESEREVESSVAKAYAEEIGAMFVETSAKMDTHVQDVFVELSKRLPKRQPAPHVAADTLNFDSGGGSSCC 922
            +++RE KVVLLGDTGVGKSSL  R+VTN FKPYSESTIGASFMSKMI+VDGAP K QIWDTAGQEKYHSLAPMYYRGAAAAI+V+DITK  S   LK W+ ELQ QGP+ +A+AIAGNK DL   R V +  AKA+A +IGA++ ETSAK DT+V  +F +L +R P    A    A  L  D+     CC
Sbjct:    6 TRTRECKVVLLGDTGVGKSSLAQRYVTNTFKPYSESTIGASFMSKMILVDGAPCKCQIWDTAGQEKYHSLAPMYYRGAAAAILVFDITKPASLDKLKAWVRELQTQGPERLALAIAGNKADLADRRAVPADDAKAFAADIGALYCETSAKDDTNVSQLFADLVRRAPAGGAARTDDAFDLGHDAAPRRGCC 196
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17529.4567.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KE80_9PHAE6.070e-11287.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2SUM8_9STRA9.860e-8067.01Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
F0WNT1_9STRA1.960e-7968.56Rab5 family GTPase putative n=3 Tax=Albugo TaxID=6... [more]
D8LEW7_ECTSI7.470e-7994.07Rab22, RAB family GTPase n=1 Tax=Ectocarpus silicu... [more]
D0N0I0_PHYIT1.640e-7866.67Rab5 family GTPase, putative n=2 Tax=Phytophthora ... [more]
K3X978_GLOUD8.820e-7866.49Uncharacterized protein n=22 Tax=Oomycota TaxID=47... [more]
A0A067CI89_SAPPC7.800e-7565.28Uncharacterized protein n=7 Tax=Saprolegniaceae Ta... [more]
A0A7S1CIP5_9STRA3.490e-7371.26Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A3R7AA57_9STRA5.860e-7363.37Uncharacterized protein n=4 Tax=Aphanomyces astaci... [more]
F0Y0I1_AURAN5.850e-7163.87Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17529contigH-elongata_contig17529:26..4242 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score259.2
Seed ortholog evalue1.6e-66
Seed eggNOG ortholog4792.ETI52048
Preferred nameRAB31
KEGG koko:K07891
KEGG Pathwayko04144,map04144
GOsGO:0000139,GO:0000166,GO:0001775,GO:0001882,GO:0001883,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005769,GO:0005794,GO:0005802,GO:0005829,GO:0005856,GO:0005886,GO:0006810,GO:0006887,GO:0006892,GO:0006893,GO:0006897,GO:0006898,GO:0006955,GO:0006996,GO:0007032,GO:0008104,GO:0008150,GO:0008152,GO:0009719,GO:0009725,GO:0009987,GO:0010008,GO:0010033,GO:0010243,GO:0010256,GO:0012505,GO:0012506,GO:0015031,GO:0015629,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019003,GO:0030139,GO:0030141,GO:0030659,GO:0030667,GO:0031090,GO:0031410,GO:0031623,GO:0031901,GO:0031982,GO:0031984,GO:0032535,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032588,GO:0032868,GO:0032869,GO:0032870,GO:0032940,GO:0033036,GO:0034613,GO:0035639,GO:0036094,GO:0036230,GO:0042119,GO:0042221,GO:0042886,GO:0043001,GO:0043112,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043299,GO:0043312,GO:0043434,GO:0044237,GO:0044260,GO:0044422,GO:0044424,GO:0044431,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045184,GO:0045321,GO:0045335,GO:0046903,GO:0048193,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051716,GO:0061951,GO:0065007,GO:0065008,GO:0070727,GO:0070887,GO:0071310,GO:0071375,GO:0071417,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072657,GO:0072659,GO:0090066,GO:0090150,GO:0090382,GO:0097159,GO:0097367,GO:0097494,GO:0097708,GO:0098588,GO:0098657,GO:0098791,GO:0098805,GO:0098876,GO:0099503,GO:1901265,GO:1901363,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1990778
EggNOG free text desc.Rab subfamily of small GTPases
EggNOG OGs3Q9EC@4776,KOG0092@1,KOG0092@2759
COG Functional cat.U
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04031,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRab22, RAB family GTPase
Ec32 orthologEc-21_005820.1
Exons5
Model size1718
Cds size603
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930016.5587711-UTR-H-elongata_contig17529:25..8181622930016.5587711-UTR-H-elongata_contig17529:25..818Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17529 26..818 -
1691679247.236674-UTR-H-elongata_contig17529:25..8181691679247.236674-UTR-H-elongata_contig17529:25..818Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17529 26..818 -
1622930016.6649034-UTR-H-elongata_contig17529:3920..42421622930016.6649034-UTR-H-elongata_contig17529:3920..4242Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17529 3921..4242 -
1691679247.3017037-UTR-H-elongata_contig17529:3920..42421691679247.3017037-UTR-H-elongata_contig17529:3920..4242Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17529 3921..4242 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930016.5744479-CDS-H-elongata_contig17529:818..10161622930016.5744479-CDS-H-elongata_contig17529:818..1016Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17529 819..1016 -
1691679247.2492216-CDS-H-elongata_contig17529:818..10161691679247.2492216-CDS-H-elongata_contig17529:818..1016Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17529 819..1016 -
1622930016.588015-CDS-H-elongata_contig17529:1301..15081622930016.588015-CDS-H-elongata_contig17529:1301..1508Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17529 1302..1508 -
1691679247.2634337-CDS-H-elongata_contig17529:1301..15081691679247.2634337-CDS-H-elongata_contig17529:1301..1508Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17529 1302..1508 -
1622930016.599654-CDS-H-elongata_contig17529:1898..19531622930016.599654-CDS-H-elongata_contig17529:1898..1953Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17529 1899..1953 -
1691679247.278632-CDS-H-elongata_contig17529:1898..19531691679247.278632-CDS-H-elongata_contig17529:1898..1953Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17529 1899..1953 -
1622930016.6316283-CDS-H-elongata_contig17529:2284..23571622930016.6316283-CDS-H-elongata_contig17529:2284..2357Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17529 2285..2357 -
1691679247.2863088-CDS-H-elongata_contig17529:2284..23571691679247.2863088-CDS-H-elongata_contig17529:2284..2357Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17529 2285..2357 -
1622930016.6462357-CDS-H-elongata_contig17529:3850..39201622930016.6462357-CDS-H-elongata_contig17529:3850..3920Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17529 3851..3920 -
1691679247.2937717-CDS-H-elongata_contig17529:3850..39201691679247.2937717-CDS-H-elongata_contig17529:3850..3920Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17529 3851..3920 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17529.4567.1prot_H-elongata_contig17529.4567.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17529 819..3920 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17529.4567.1

>prot_H-elongata_contig17529.4567.1 ID=prot_H-elongata_contig17529.4567.1|Name=mRNA_H-elongata_contig17529.4567.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=201bp
MSRRTSSLDSKSREVKVVLLGDTGVGKSSLVHRFVTNNFKPYSESTIGAS
FMSKMIMVDGAPMKFQIWDTAGQEKYHSLAPMYYRGAAAAIVVYDITKMH
SFRTLKEWINELQAQGPQDIAIAIAGNKRDLESEREVESSVAKAYAEEIG
AMFVETSAKMDTHVQDVFVELSKRLPKRQPAPHVAADTLNFDSGGGSSCC
*
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mRNA from alignment at H-elongata_contig17529:26..4242-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17529.4567.1 ID=mRNA_H-elongata_contig17529.4567.1|Name=mRNA_H-elongata_contig17529.4567.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4217bp|location=Sequence derived from alignment at H-elongata_contig17529:26..4242- (Himanthalia elongata Himel1 dioecious)
AGTGTTGACGCTCATCTTGAGGTCCCAATCAGCCTTTGACATATCCAATC
ACGCCCAGTATCGAGAGACAAGCGTGTAGAGTGAAACGAGTTGTTCTACC
TTGAAATTTATCCACGGATCGTTTCCCTACGCCTCACGGGGGCGAAGAAA
TAGGAGCAAGCGGCCCAAACTTGAAATTCTCTCTTCTGAGCTCGCCTTCC
TTTTTCAGTCCGAAGCCGGACGCGGAGGTCTACCGTACTCCTGTAAACTG
GTCTATATATCAGCGCTTCAGACGCACGTGGGAGCTCTACCGGTTGGAGG
TCACTCCTTACTGACCGAGAGGATGAGTCGAAGGACATCGTCCCTAGATT
CAAAGTCTCGAGAAGTGAAGGTTGTTCTTCTTGGGGATACAGGTACAGTA
CAGTAGTATACTAAAAACTACAAGGAGGCGCGGAAGCTTCTTCTGAATAT
GTCGATAAGAACCTCGAAGTAGAGCCGGTCTGTACCGTCTGTTGTTGTTG
TTGTTGTTGATCACACATTTAGCAGAAGATCAACCGGATTTGGTTGCCTT
CTGGTCGTGGTCAGCTAAACAGGCAAAATATTTTCCCCCTGTTCAGCGTG
TGGGTAATTTCATATTTTCGCGAGTACTATTCTGAAGAGAGGAATTATAT
GGTAGACAGTTGGAGCCCTTCTAAACCAACCCGTCTAGTGCATGGTACGA
TCCTCTTTAGGGGGGTTTGCCAGCTTCTACTACAGTATTAATTATTAATA
AGTTTTCCAAGGACGGTATTTATTTACCTTATATTTTTACCTAACATTTT
GGTTGCTGTGGTGTTGAATGAGTTGGTTGGGCCCAGATCGGGTACAGTAC
TAGGAAGAACATAACATGCCCACACACAGTAATGTCGAGGTTTTCATCCT
CCGTGCGTATCGATCGAAAGCTAAATTCACGGTAGTACGCTACCATACGC
AGATGGGGAACCGACATGAGACCCTAGAAAGCATTCATATCCTTAATCGC
GCTAGGTGACACCCTGAATGTAGGTAGTTCACGGGCTACAGTAGCTCTGG
TGTCATAGTCGCATCGCCGTAACCCTTTTAAGATAATATAAAACGCTGTA
GATCCGCCGTTAAGTACAAAAGCAGTGGCACTGCGATCGACATCGGACAC
GTTTCGCGAGTTGTCCTTGGGGAGCATTTACGCACACAATCGCTGCAATG
GTGCAGGCAGGCTCAAGGTCTCGCGCCTCTCTATCCCGAACATGAGCACA
TACCCCGAAACGAAGTGGAATATCGAATCGAATAAAAAAAATCCCGAGGA
GCGTGAGGGAGCTGGGCGTTCAGCGCCGTCGTAGCGCTCATAATGCCACT
GCGGTATAGTAATCCGATGATACCATCCAATGCTGCTCACTGCCGCAAAT
CCCATTCCCCGCAATAGCAAGGACGCTTCTATTTATTAACTTCAGAGCCT
GCAACAGTTTCGATGCGACACCGGGAACTGAAGGTTGCCAACGGTCGCTC
GGCTCTGTTGGAAGTCAATTGAGCCGATCAACCCGCAAGGCCACTTGTTG
TTTACAATGGCTTCTCGCACGGGGAAAACCCCAAACGAAGCCAAGTCGTA
TTTAATGCATACATGACCACAGCCACGCACAGAAATACATCTTTCGTAAA
AGGTAGCAAGATTACTTACGGTCCAATCAGACGAAGTTTGATACGCGATA
AGAGCCATCGGGATAGAGGAAAGGAGGGACCCCTTTATGCGCGAAGTCCT
CGAGTCGCACCGGGATCTATCTAGGCTGAAAAGGGTGCAGCTCGGAGCGT
ATCCCCATCGCCCTATCTTAGCCAAACGATTACAATTGCGTCCCTTTGAT
TTTGCTCCGACTTGCTTCCTCGAACAACGCGTCAGGCGTCGGCAAGTCCA
GCCTGGTACATCGATTTGTCACTAACAACTTCAAGCCCTACAGCGAAAGC
ACCATCGGGTACGTTCCCACACTTTTCCCCCCGTTGCATTTTTTTCGTAG
TGGTGTATCTATATCACAGATAAGATGACAACAAAAATCTTGTCGCGGTG
ATCTGTGTATCAATACACGCGGTGGCTCGCTAGATTACTAATAGCAAAAG
GCTTTGGATCCCGAATTCCTGACGACGTCGTATTTTTTTCTCGGCACTTG
GCCTAATCCGACCGAGCATGCAAGGTGGTAAGGTTCGGGCGAAGGTCTTC
CCGTTCAAGCAAGAATCACGTCCCCGTCTCTTCTCTCTGTAAGCCCTCTA
TCCCCTGACTCCGCTGCCTTTGTCTCAACACGCTCGCAGCGCTTCCTTCA
TGTCGAAGATGATAATGGTGGATGGCGCGCCAATGAAGTTCCAGGTGAGC
CCTGTGCTTAGTATAATTCAATGTTTCGTCAGGCTGCTCTGCGCTTGCGA
GTGTCGAGGACGATAATTTGCTTGTAACATTTCCTCCCATTAAGTACTGC
GCGTTATCGCTTGTGAACCGCTCGCTTTCCTCGAATGTACAGGGCCATTG
TCGGCTTTCTTGAGTAAGGGTGATCAAATATATGTTAATTGCTGTATATA
TACTGAAACGCTGATCATTGGGTTCGAATCCACACTGGCAAGCATTTAAG
GTGTAAGATGTCTTCGCTAACGATCGGATTAGTTCACGAGCAGGAGTCCT
ATATACCAATGTGTTGAGGTACGCTGGAGAGGGTGTGAGTCGCCTCTTTT
CGCCGAAACCCCGCCCCATACGCGAACGCGCTAGATCTGGGACACCGCGG
GACAGGAGAAGTATCACAGCCTGGCTCCAATGTACTACAGAGGGGCGGCA
GCGGCGATCGTGGTTTACGACATCACGAAGATGCACTCGTTCCGCACGCT
GAAGGAGTGGATTAACGAGCTGCAGGCACAGGGGCCGCAAGACATTGCGA
TCGCAATCGCCGGCAACAAGCGCGATTTGGAATCGGAACGAGTAAGGCCG
CCCCTTCGTTTTGGTTCAGTCACTGCGCCGCGCAGCCCGTTCTTTCTATT
TCCACTGTGACTACTCCATTTTATATGCCATGCCACTGGAGATGGACACG
ACCACAGCGCGTTCGTTTAAGTGCGACAACCGGAGCAAGCGCGGATTGGG
ATCCCCGTTCCCCGCACGGTTAAACGCCTCGCACTTTACCTTGAGACCTT
CCGGCTTTCGTTGCTTTCCTTTCACCATGCATGCGTGATTCCCCCGCCCC
CCTCCCCCCCCCCATTCGCGCTGCAGGAGGTAGAGTCTTCCGTGGCTAAG
GCGTACGCAGAGGAAATCGGAGCGATGTTCGTGGAGACGAGCGCGAAGAT
GGACACGCACGTACAGGACGTGTTTGTCGAGCTCAGCAAACGCCTCCCGA
AGAGACAGCCCGCCCCGCACGTCGCTGCGGACACGCTGAATTTTGACTCC
GGCGGCGGTTCATCGTGTTGTTGACCTGACCTCGCGTGGGGATTGTGATT
CTTTCAGGGAGCGGGGGTTCCCTACCAATAATGTATTGTCTTCGTTCCTC
GGTTACCGCCGTTGCAAAGCCCACGGTTATAAATTATTCGTTGGTGACGT
GGTCCCAACACACTTTCAAGGTGTTTGTCCTGGAAGGCTTTTTGCCGGCA
CGCACTCGAGAGTGCCCTGGCTAGATAGTGGTGGCGGTATATTCTCGTGG
AAAAGGCGCAGCGGGCCCGTGGTCCCGATCGAAAATATCTTCGATTGTAC
GGTAGCTCTAGCATCCTTTTAATTATATTAGCCCTAGCCCCTTTGTGCAG
CGTGTTCTACCCAGGCCGTCGGTGCTAGAGCGGTCGGAACTGCTGCATGT
ATATACAATAGTACTATTTTTTTTTGTCACCGAAGTCAAAGTAAAATAAT
ATTGTTGGTACACCGAGGTGGTTCTGAGCAATGAATACTCTTGGAAGTCG
CATTTTCAGCGTCGTGGACTCCGCATGTGACAAGCCAAGCTCGGTTGCAC
GTATTCCGCCTCGTCCGTCTATGTACCCCTCGACGATGCGAGTCGCTCCT
GCACCGTTTCGATCATCCTGCACGTATTCCTATCTTGACATGTGCCTGAT
TACCCTTCACCTTCCTGATGCCGACTTCGTGTTTTCGTTGTGACGAGGAG
TAAATTGGTTATCCCCGTACCATAAAAAAATCTCTGGTGGATAAGCTTAG
CTCAAAATTTTCAAATGTCCGTTTCTTTGCTGGGGCTGGGGATTGTTAAA
GGTGGATATCAACCACC
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Coding sequence (CDS) from alignment at H-elongata_contig17529:26..4242-

>mRNA_H-elongata_contig17529.4567.1 ID=mRNA_H-elongata_contig17529.4567.1|Name=mRNA_H-elongata_contig17529.4567.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1206bp|location=Sequence derived from alignment at H-elongata_contig17529:26..4242- (Himanthalia elongata Himel1 dioecious)
ATGAGTCGAAGGACATCGTCCCTAGATTCAAAGTCTCGAGAAGTGAAGGT
TGTTCTTCTTGGGGATACAGATGAGTCGAAGGACATCGTCCCTAGATTCA
AAGTCTCGAGAAGTGAAGGTTGTTCTTCTTGGGGATACAGGCGTCGGCAA
GTCCAGCCTGGTACATCGATTTGTCACTAACAACTTCAAGCCCTACAGCG
AAAGCACCATCGGGCGTCGGCAAGTCCAGCCTGGTACATCGATTTGTCAC
TAACAACTTCAAGCCCTACAGCGAAAGCACCATCGGCGCTTCCTTCATGT
CGAAGATGATAATGGTGGATGGCGCGCCAATGAAGTTCCAGCGCTTCCTT
CATGTCGAAGATGATAATGGTGGATGGCGCGCCAATGAAGTTCCAGATCT
GGGACACCGCGGGACAGGAGAAGTATCACAGCCTGGCTCCAATGTACTAC
AGAGGGGCGGCAGCGGCGATCGTGGTTTACGACATCACGAAGATGCACTC
GTTCCGCACGCTGAAGGAGTGGATTAACGAGCTGCAGGCACAGGGGCCGC
AAGACATTGCGATCGCAATCGCCGGCAACAAGCGCGATTTGGAATCGGAA
CGAATCTGGGACACCGCGGGACAGGAGAAGTATCACAGCCTGGCTCCAAT
GTACTACAGAGGGGCGGCAGCGGCGATCGTGGTTTACGACATCACGAAGA
TGCACTCGTTCCGCACGCTGAAGGAGTGGATTAACGAGCTGCAGGCACAG
GGGCCGCAAGACATTGCGATCGCAATCGCCGGCAACAAGCGCGATTTGGA
ATCGGAACGAGAGGTAGAGTCTTCCGTGGCTAAGGCGTACGCAGAGGAAA
TCGGAGCGATGTTCGTGGAGACGAGCGCGAAGATGGACACGCACGTACAG
GACGTGTTTGTCGAGCTCAGCAAACGCCTCCCGAAGAGACAGCCCGCCCC
GCACGTCGCTGCGGACACGCTGAATTTTGACTCCGGCGGCGGTTCATCGT
GTTGTTGAGAGGTAGAGTCTTCCGTGGCTAAGGCGTACGCAGAGGAAATC
GGAGCGATGTTCGTGGAGACGAGCGCGAAGATGGACACGCACGTACAGGA
CGTGTTTGTCGAGCTCAGCAAACGCCTCCCGAAGAGACAGCCCGCCCCGC
ACGTCGCTGCGGACACGCTGAATTTTGACTCCGGCGGCGGTTCATCGTGT
TGTTGA
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