mRNA_H-elongata_contig17521.4564.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig17521.4564.1 vs. uniprot
Match: D7G030_ECTSI (EXS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G030_ECTSI) HSP 1 Score: 513 bits (1320), Expect = 6.820e-175 Identity = 250/336 (74.40%), Postives = 284/336 (84.52%), Query Frame = 1
Query: 1 SGPRVAIEDDEPEDTTRKDKPHRVPVPPSWRQVVTTSGVFLGILLACIYGSRLLLVPPTVAVGGFYFILGVALLVPLQAPSVRDHTSLFFTSLAGVFFPATDIHLSEVLVADALTSLSRVFADVAVTFLLVGRGWGVQYPGWCFRLIPCVFASCPYWVRVRQCATQLATEVDARRRRLLMINVGKYMSAFPVIWLTGYQAMRQDGGVITSSVLGNCIVAAALFNSIYSFAWDVKMDWGLGQPGAKHWGLRNTLLISPEDPWPYYAAVALDLLLRLTWLARLADRWLRRTDLVLTLELIEVLRRSMWNVFRLEWECVQCLGGARPLRLDKGSEALKL 1008
SGPR+A ED DT+ K KP RVP PPSWRQVV+T+ FLG+LLACI+GSR+L VPPTVAVGGFYFILG ALLVPLQAPSVR HT+LFFTSLAGVFFPATD+H +EVLVADALTSLSRVFADVAVTFLLV +GWG++YPGW F PCVFAS PYWVRVRQC QL EVD +R+ LL INVGKY+SAFPVIWLTGYQAMR G +G I+AAAL NS+YSFAWDVKMDWGLGQ G++ WGLRNTLLI E PWPYY AVA+DL+LRLTW+ARLA+ R D+VLTLEL+E+LRRSMWNVFRLEWEC+QCLGGA+ +RLDKGS+AL++
Sbjct: 50 SGPRLATEDQG--DTSGKGKPTRVPTPPSWRQVVSTAAGFLGVLLACIHGSRMLRVPPTVAVGGFYFILGGALLVPLQAPSVRQHTALFFTSLAGVFFPATDVHFAEVLVADALTSLSRVFADVAVTFLLVAKGWGMRYPGWAFLYTPCVFASFPYWVRVRQCVMQLTYEVDPKRKLLLAINVGKYLSAFPVIWLTGYQAMRHYDGAAYLPGVGKAIIAAALLNSVYSFAWDVKMDWGLGQRGSRRWGLRNTLLICHEAPWPYYVAVAVDLVLRLTWVARLAEERFRSVDMVLTLELVEILRRSMWNVFRLEWECIQCLGGAKAVRLDKGSDALRV 383
BLAST of mRNA_H-elongata_contig17521.4564.1 vs. uniprot
Match: A0A835YVP0_9STRA (EXS family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVP0_9STRA) HSP 1 Score: 206 bits (523), Expect = 6.050e-56 Identity = 127/290 (43.79%), Postives = 164/290 (56.55%), Query Frame = 1
Query: 94 QVVTTSGVFLGILLACIYGSRLLLVPPTVAVGGFYFILGVALLVPLQAPSVRDHTSLFFTSLAGVFFPATDIHLSEVLVADALTSLSRVFADVAVTFLLVGRGWGVQYP-GWCFRLIPCVFASC-PYWVRVRQCATQLATEVDARRRRLLMINVGKYMSAFPVIWLTGYQAMRQDGGVITSSVLGNCIVAAALFNSIYSFAWDVKMDWGLGQPGAKHWGLRNTLLISPEDPWPYYAAVALDLLLRLTWLARLADRW--LRRTDLVLTLELIEVLRRSMWNVFRLEWECVQ 951
Q+V SG L +LL C+ L + P VAVG F ++G+ LLVP+Q+ ++RD + +++ V P++D+ EVLVADAL SLSRVF+D + L++ W P R+ +C P +RVRQCA E D RRRL +N+GKY+S P + L A+ + L AAA FN+ Y AWDV+MDWGLG GAK GLR TLL+ P YYAA+A D LR W+ LA L TDL L LEL+EV RR MW V RLEWE VQ
Sbjct: 90 QLVLGSGFLLALLLLCLRIGELAQIMPNVAVGAFAIMVGLMLLVPMQS-AMRDGLNFLLSTVGRVLCPSSDVPFVEVLVADALCSLSRVFSDAGLAILVLAATWTSSAPPSQVTRVFVTATLACLPAVLRVRQCAILHFAEPDPARRRLHALNIGKYLSTLPPVLLGALHALAPPA--LDGVPLATAAAAAAAFNTAYCLAWDVRMDWGLGDLGAKAAGLRPTLLLGAHAP--YYAAIAADAALRCAWVRPLAALGYALALTDLTLVLELVEVCRRCMWAVLRLEWEAVQ 374
BLAST of mRNA_H-elongata_contig17521.4564.1 vs. uniprot
Match: W7TLW9_9STRA (Protein-er retention protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TLW9_9STRA) HSP 1 Score: 161 bits (408), Expect = 2.850e-39 Identity = 115/318 (36.16%), Postives = 164/318 (51.57%), Query Frame = 1
Query: 91 RQVVTTSGVFLGILLACIY-GSRLLLVPPTVAVGGFYFILGVALLVPLQAPSV-RDHTSLFFTSLAGVFFPATDIHLSEVLVADALTSLSRVFADVAVTFL--LVGRGWGVQYPGWCFRLI-----PCVFASCPYWVRVRQCATQLATEVDARRRRLLMINVGKYMSAFPVIWLTGYQAMRQDGGVITSSVLGNCIVAAALFNSIYSFAWDVKMDWGLGQ---PGA-----------KHWGLRNTLLISPEDPWPYYAAVALDLLLRLTWLARLA--DRWLRRTDLVLTLELIEVLRRSMWNVFRLEWECVQCLGGAR 969
R+V+ V + ++ CI S LL P A FYF+L A++ P + R+ LF L V P T+IH EVLV D LTSLS+VF +V +T + L+ G+ FR++ P + AS P+ +R+RQC Q + R L+ +N+ KY S+ P +WL A + + ++ L NS+YSF WDV MDWGLG GA +HWGLR TLL YYAA+ LDL+LRL W+ + D L +L +E +EVLRR +W+++R+EWEC+ GG +
Sbjct: 114 RKVINLVTVLVLAMVFCILIMSELLGQPYQHAPFIFYFLLLAAVIYPSDTTLMFRELALLFGRVLWLVVLPGTEIHFLEVLVGDILTSLSKVFFEVGLTCVATLLSLSPGL------FRIVSPDIFPTLLASTPFILRIRQCVVQRRGTASGKARFLVSLNILKYCSSIPGLWLPLLLAPHYS-----TYQIERVLLVVLLVNSLYSFLWDVIMDWGLGHVKLTGAPKKGGGGAVRLRHWGLRPTLLFGSAGS--YYAAIGLDLVLRLVWVLKYVNFDHRLSYDKFMLLIECLEVLRRGIWSIYRIEWECLSINGGRK 418
BLAST of mRNA_H-elongata_contig17521.4564.1 vs. uniprot
Match: A0A0L0FR54_9EUKA (EXS domain-containing protein (Fragment) n=2 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FR54_9EUKA) HSP 1 Score: 128 bits (322), Expect = 9.230e-29 Identity = 80/227 (35.24%), Postives = 123/227 (54.19%), Query Frame = 1
Query: 292 FPATDIHLSEVLVADALTSLSRVFADVAVTFLLVG---RGWGVQ--YPGWCFRLIPCVFASCPYWVRVRQCATQLATEVDARRRRLLMINVGKYMSAFPVIWLTGYQAMRQDGGVITSSVLGNCIVAAALFNSIYSFAWDVKMDWGLGQPGAKHWGLRNTLLISPEDPWP-YYAAVALDLLLRLTWLARLADRW-LRRTDLVLTLELIEVLRRSMWNVFRLEWECVQ 951
FP I +EV +AD LTSLS+VFAD F VG W V PG L + S PY +R+RQC E A + ++N KY SA+P IWL M G S L + + A++ N++Y++ WD+ DWGL + ++ LR +++ P P YY + +DL+LR W +L++ L D ++ EL+E++RR++WN+ R+E+EC++
Sbjct: 98 FPGARISFAEVFIADGLTSLSKVFADFEQIFCFVGYHVHQWDVYDASPGCMSSLFLPIVVSIPYTIRLRQCLI----EYRAAGVQKDLVNAFKYASAYPPIWLGHALKMAPTG---QSPTLYSAWILASVVNTMYTYYWDLVWDWGLFDRTSPNYPLRARMML----PRPLYYMWILIDLILRCVWSVQLSNLLRLNSADKIILFELLEIIRRALWNIVRVEYECIK 313
BLAST of mRNA_H-elongata_contig17521.4564.1 vs. uniprot
Match: A0A4P9XQW3_9FUNG (EXS family-domain-containing protein (Fragment) n=1 Tax=Thamnocephalis sphaerospora TaxID=78915 RepID=A0A4P9XQW3_9FUNG) HSP 1 Score: 122 bits (307), Expect = 6.620e-27 Identity = 89/253 (35.18%), Postives = 123/253 (48.62%), Query Frame = 1
Query: 247 RDHTSLFFTSLAGVFFP--ATDIHLSEVLVADALTSLSRVFADVAVTFLLVGRGWGV--------QYPGWCFRLIPCVFASCPYWVRVRQCATQLATEVDARRRRLLMINVGKYMSAFPVIWLTGYQAMRQDGGVITSSVLGNCIVAAALFNSIYSFAWDVKMDWGLGQ---PGAKHWGLRNTLL---ISPEDPWPYYAAVALDLLLRLTWLARLADRWLRRTDLV---LTLELIEVLRRSMWNVFRLEWECV 948
R F SL + F A+ +HL++V++AD LTS +RV AD+ V V + Q + + V + PY +R++QC + A D RR + N KY SAFPVI L+ Q +R + + C+ LFNS YSF WDV +DW LG P W + L + +P YY A+ LD LLR TW +L+ LR +L LE +EV+RR +W FRLE E V
Sbjct: 95 RHKRFCFLRSLGRIIFGGLASPVHLADVVLADILTSFARVLADLYVVLCYVVTASSLDLAIHSLEQSTTCVYSWVGPVLVALPYMLRLKQCLIEAAQSRDWPSRRRHLANALKYASAFPVIILSAVQRLRSSDSIRAWENMFVCV----LFNSFYSFYWDVAVDWQLGPLSLPLTPQWEVHARYLRPMLHFSEPSIYYLAIVLDFLLRFTWSLKLSTH-LRLDELTAGGFVLEWLEVVRRWLWVYFRLEREWV 342
BLAST of mRNA_H-elongata_contig17521.4564.1 vs. uniprot
Match: F2UM19_SALR5 (EXS domain-containing protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UM19_SALR5) HSP 1 Score: 123 bits (308), Expect = 7.470e-27 Identity = 79/241 (32.78%), Postives = 123/241 (51.04%), Query Frame = 1
Query: 265 FFTSLAGVFFPATDIHLSEVLVADALTSLSRVFADVAVTFLLVGRGWGVQYPGWCFR----LIPCVFASCPYWVRVRQCATQLATEVDARRRRLLMINVGKYMSAFPVIWLTG--YQAMRQDGGVITS--SVLGNCIVAAALFNSIYSFAWDVKMDWGLGQ-PGAKHWGLRNTLLISPEDPWPYYAAVALDLLLRLTWLARLADRWLRRTD---LVLTLELIEVLRRSMWNVFRLEWECVQ 951
FF FF +++ +VL ADALTS+S++ AD+ + + + + R ++ V AS PY +R QC + + ++N+GKY+S+FPVIW + +Q +G + L + N++YS+ WD+ MDWGL + P AKH LR+ L + PW YY A+A DL LRL W +L+ + E++EV RR +WN FR+EW+ +Q
Sbjct: 108 FFYERLHTFFTFSEVKFVDVLTADALTSMSKLLADMQIVVCSIVGVLSLNFDAGNTRCMHSVVAPVLASLPYLIRAIQCYRAYLSTGSSHH----LVNLGKYLSSFPVIWTSALKHQLAPVEGVRLDKHDQYLQLLWLYTVTINTLYSYLWDILMDWGLCRSPRAKHVLLRDDLHF--KRPWLYYTAMAGDLALRLCWSLKLSSHLQQHASGQAFAFLFEVLEVFRRFVWNFFRVEWQYIQ 342
BLAST of mRNA_H-elongata_contig17521.4564.1 vs. uniprot
Match: A0A7S1IAN5_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1IAN5_9EUGL) HSP 1 Score: 123 bits (309), Expect = 1.450e-26 Identity = 96/311 (30.87%), Postives = 146/311 (46.95%), Query Frame = 1
Query: 91 RQVVTTSGVFLGILLACIYGSRLLLVPPTVAVGGFYFILGVALLVPLQAPSVRDHTSLFFTSLAGVFFPATDIHLSEVLVADALTSLSRVFADVAVTFLLVGRGWGVQYPGWCFRL-----IPCVFASCPYWVRVRQCATQLATEVDARRRRLLMINVGKYMSAFPVIWLTGYQAMRQDGGVIT-SSVLGNCIVAAALFNSIYSFAWDVKMDWGLGQPGAKHWGLRNTLLISPEDPWPYYAAVALDLLLRLTWLARLADRW-----LRRTDLVLTLELIEVLRRSMWNVFRLEWECVQCLGGARPLRLDKG 990
R V T+ +F +LLA I P+ + +I + LL ++P +L + + P T + V++AD LTS S+VFAD+ T ++ + + I + AS P W+R+ QC +T D RR LL N KY +AFPV++ + ++Q L + + NS+YSF WD+ DWGLG + + LR+ L+ W YYA + DLLLR TW +L+ W + R + LE +E+ RR MW FR EW+ + + P+R DKG
Sbjct: 120 RTVYCTASLFTVVLLANIVTFTQARGIPSTFIPLCLYISMLLLLCWPKSPFHNARYALLQALQSVMLSPFTGVAFVHVILADLLTSYSKVFADMYGTVCVISNSTDRHFHASILQACRNDPIGPIVASLPSWLRLFQCLKAYST--DGERRHLL--NALKYSTAFPVLF---FSYLKQGPSAEAWGPQLSQLWLLSVFVNSLYSFYWDIYYDWGLGSISSSNLLLRDRLVFPKR--WWYYATMVTDLLLRFTWSLQLSPHWWFIGSVGREFKMFVLEAVEIFRRCMWIFFRCEWQHI-----SHPIREDKG 416
BLAST of mRNA_H-elongata_contig17521.4564.1 vs. uniprot
Match: A0A8K1FNJ1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FNJ1_PYTOL) HSP 1 Score: 122 bits (307), Expect = 6.030e-26 Identity = 93/299 (31.10%), Postives = 140/299 (46.82%), Query Frame = 1
Query: 190 GFYFILGVALLVPLQAPSVRDHTSLFFTSLAGVFFPATDIHLS---------EVLVADALTSLSRVFADVAVTFLLVGRGW----GVQYPGWCFRL----IPCVFASCPYWVRVRQCATQLATEVDARRRRLLMINVGKYMSAFPVIWLTGY-QAMRQDGGVITSSVLGNCIVAAALFNSIYSFAWDVKMDWGLGQPGAKH--WGLRNTLLISPEDPWPYYAAVALDLLLRLTWLARLADRWLRRTDLVLTLELIEVLRRSMWNVFRLEWECVQC-LGGARPLRLDKGSEALKL*RVPM 1023
G+ FI G+ L P + S+ L+ +P + L EV +AD LTSLS+ D AV ++L+ + G + ++ +P AS PY +R QC A R L ++N KY S+ VI + Y Q M G + + L + A+FNS+YSF WDV MDWGLGQP LR+ L+ P W YY + +D LR+ W+ + D D + + EV+RR +WNV R+EW+C++ + G++ L D L +P+
Sbjct: 110 GYCFIAGLLLFCPFDIMHRKCRYSVI-RKLSRCLWPFQNFSLDLPPHPTPFVEVFLADGLTSLSKFIQDSAVAWMLLSLSFSQELGELRTSYVSKMKSSPLPYFAASMPYIIRATQCLISFHRTTSANDRFLHLLNTLKYCSSLLVISVGAYPQIMGHVGVRLEKNTL---FLFCAVFNSLYSFLWDVIMDWGLGQPNLPRRVMFLRHHLIYRPR--WIYYGVIVVDFALRILWVTKWWDWQHFGVDFKMLSMVAEVVRRVIWNVLRVEWQCIKLEILGSKKLSEDSMELEQSLENMPL 402
BLAST of mRNA_H-elongata_contig17521.4564.1 vs. uniprot
Match: A0A7S1MLS0_ALECA (Hypothetical protein (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1MLS0_ALECA) HSP 1 Score: 118 bits (295), Expect = 6.470e-26 Identity = 93/281 (33.10%), Postives = 134/281 (47.69%), Query Frame = 1
Query: 232 QAPSVRDHTSLFFTSLAGVFFP--ATDIHLSEVLVADALTSLSRVFADVAVTFLLVGRGWGVQYPG-W-------------------CFRL-IPCVFASCPYWVRVRQCATQLATEVDARRRRLLMINVGKYMSAFPVIWLTGYQAMRQDGGVITS-SVLGNCIVAAALFNSIYSFAWDVKMDWGLGQPG---AKHWGLRNTLLISPEDPWPYYAAVALDLLLRLTW-------LARLADRWLRRTDLVLTLELIEVLRRSMWNVFRLEWECVQCLGGARP 972
+AP R + F +L F+P A + +VLVAD LTSL+R F D+A+ + G PG W C R +P V + P+ VR RQC +A R+L ++N+ KY+SA P++ L +A +G I LG + A + N+++S+ WD+ MDWGL P + +GLR LL+ E YY A+A D L R W RL WL + +EV RR +W+ R+EW+CV+ GG RP
Sbjct: 7 RAPPAR---AAFARALRRCFWPDAAKETPFVQVLVADGLTSLARAFFDIALGSCAALQAAGG--PGAWALTRGAGERPTLLGDALEQCGRSPLPYVAWAAPFLVRARQCWLSSRHAPEALSRQLHLLNLAKYLSALPIVCLAFLRAQASEGEDIEGLEFLG---LLAGVVNTVFSYLWDLAMDWGLLHPAPPLSGRFGLRPVLLLC-EGGGFYYLAIAADALARACWSLRWCPEAVRLGGFWLGSLQ-----QAVEVARRCLWSALRVEWQCVRTGGGPRP 273
BLAST of mRNA_H-elongata_contig17521.4564.1 vs. uniprot
Match: J3NJS2_GAET3 (EXS domain-containing protein n=1 Tax=Gaeumannomyces tritici (strain R3-111a-1) TaxID=644352 RepID=J3NJS2_GAET3) HSP 1 Score: 120 bits (302), Expect = 1.130e-25 Identity = 97/248 (39.11%), Postives = 125/248 (50.40%), Query Frame = 1
Query: 319 EVLVADALTSLSRVFADVAVT---FLLVGRGWGVQYPG---WCFRLIPCVFASCPYWVRVRQCATQLATEVDARRRRLL------MINVGKYMSAFPVIWLTGYQAMRQDGGVITSS--VLGNCIVAAALFNSIYSFAWDVKMDWGLGQPGAKH--------WGLRNTLLISPEDPWPYYAAVALDLLLRLTWLARL----ADRWLRRTDLVLTLELIEVLRRSMWNVFRLEWECVQCLGGARPLRLD 984
++L+AD LTS SRV AD+ V FL G P +P + A PY +R+RQC T+ A + + + N KY +AFPVI L A + G TSS +LG VAA L NS+YSF WDV DW L A+ +GLR L ++P P YYAAVALDL LR TW+ R+ ADR + LEL+EVLRR +W FR+E E V+ L +D
Sbjct: 162 DILLADVLTSYSRVLADLYVCVCMFLRSGNSAATAPPDRACGASLAVPLLLAL-PYAIRLRQCLTEYLRVRRAPYKESVGWGGQHLANAAKYATAFPVIALN---AAVRPGAPQTSSRPLLGRAWVAAVLLNSLYSFYWDVAKDWDLTLLSARRRAAAPDQPYGLRRRLHLAPGPP-AYYAAVALDLALRCTWVVRVVGPTADRASGLEGSIFALELLEVLRRWVWIFFRVETEHVRNTTTGHGLAVD 404 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17521.4564.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig17521.4564.1 >prot_H-elongata_contig17521.4564.1 ID=prot_H-elongata_contig17521.4564.1|Name=mRNA_H-elongata_contig17521.4564.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=337bp SGPRVAIEDDEPEDTTRKDKPHRVPVPPSWRQVVTTSGVFLGILLACIYGback to top mRNA from alignment at H-elongata_contig17521:1033..5054- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig17521.4564.1 ID=mRNA_H-elongata_contig17521.4564.1|Name=mRNA_H-elongata_contig17521.4564.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4022bp|location=Sequence derived from alignment at H-elongata_contig17521:1033..5054- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig17521:1033..5054- >mRNA_H-elongata_contig17521.4564.1 ID=mRNA_H-elongata_contig17521.4564.1|Name=mRNA_H-elongata_contig17521.4564.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2022bp|location=Sequence derived from alignment at H-elongata_contig17521:1033..5054- (Himanthalia elongata Himel1 dioecious)back to top |