mRNA_H-elongata_contig17521.4564.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17521.4564.1
Unique NamemRNA_H-elongata_contig17521.4564.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig17521.4564.1 vs. uniprot
Match: D7G030_ECTSI (EXS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G030_ECTSI)

HSP 1 Score: 513 bits (1320), Expect = 6.820e-175
Identity = 250/336 (74.40%), Postives = 284/336 (84.52%), Query Frame = 1
Query:    1 SGPRVAIEDDEPEDTTRKDKPHRVPVPPSWRQVVTTSGVFLGILLACIYGSRLLLVPPTVAVGGFYFILGVALLVPLQAPSVRDHTSLFFTSLAGVFFPATDIHLSEVLVADALTSLSRVFADVAVTFLLVGRGWGVQYPGWCFRLIPCVFASCPYWVRVRQCATQLATEVDARRRRLLMINVGKYMSAFPVIWLTGYQAMRQDGGVITSSVLGNCIVAAALFNSIYSFAWDVKMDWGLGQPGAKHWGLRNTLLISPEDPWPYYAAVALDLLLRLTWLARLADRWLRRTDLVLTLELIEVLRRSMWNVFRLEWECVQCLGGARPLRLDKGSEALKL 1008
            SGPR+A ED    DT+ K KP RVP PPSWRQVV+T+  FLG+LLACI+GSR+L VPPTVAVGGFYFILG ALLVPLQAPSVR HT+LFFTSLAGVFFPATD+H +EVLVADALTSLSRVFADVAVTFLLV +GWG++YPGW F   PCVFAS PYWVRVRQC  QL  EVD +R+ LL INVGKY+SAFPVIWLTGYQAMR   G      +G  I+AAAL NS+YSFAWDVKMDWGLGQ G++ WGLRNTLLI  E PWPYY AVA+DL+LRLTW+ARLA+   R  D+VLTLEL+E+LRRSMWNVFRLEWEC+QCLGGA+ +RLDKGS+AL++
Sbjct:   50 SGPRLATEDQG--DTSGKGKPTRVPTPPSWRQVVSTAAGFLGVLLACIHGSRMLRVPPTVAVGGFYFILGGALLVPLQAPSVRQHTALFFTSLAGVFFPATDVHFAEVLVADALTSLSRVFADVAVTFLLVAKGWGMRYPGWAFLYTPCVFASFPYWVRVRQCVMQLTYEVDPKRKLLLAINVGKYLSAFPVIWLTGYQAMRHYDGAAYLPGVGKAIIAAALLNSVYSFAWDVKMDWGLGQRGSRRWGLRNTLLICHEAPWPYYVAVAVDLVLRLTWVARLAEERFRSVDMVLTLELVEILRRSMWNVFRLEWECIQCLGGAKAVRLDKGSDALRV 383          
BLAST of mRNA_H-elongata_contig17521.4564.1 vs. uniprot
Match: A0A835YVP0_9STRA (EXS family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVP0_9STRA)

HSP 1 Score: 206 bits (523), Expect = 6.050e-56
Identity = 127/290 (43.79%), Postives = 164/290 (56.55%), Query Frame = 1
Query:   94 QVVTTSGVFLGILLACIYGSRLLLVPPTVAVGGFYFILGVALLVPLQAPSVRDHTSLFFTSLAGVFFPATDIHLSEVLVADALTSLSRVFADVAVTFLLVGRGWGVQYP-GWCFRLIPCVFASC-PYWVRVRQCATQLATEVDARRRRLLMINVGKYMSAFPVIWLTGYQAMRQDGGVITSSVLGNCIVAAALFNSIYSFAWDVKMDWGLGQPGAKHWGLRNTLLISPEDPWPYYAAVALDLLLRLTWLARLADRW--LRRTDLVLTLELIEVLRRSMWNVFRLEWECVQ 951
            Q+V  SG  L +LL C+    L  + P VAVG F  ++G+ LLVP+Q+ ++RD  +   +++  V  P++D+   EVLVADAL SLSRVF+D  +  L++   W    P     R+      +C P  +RVRQCA     E D  RRRL  +N+GKY+S  P + L    A+      +    L     AAA FN+ Y  AWDV+MDWGLG  GAK  GLR TLL+    P  YYAA+A D  LR  W+  LA     L  TDL L LEL+EV RR MW V RLEWE VQ
Sbjct:   90 QLVLGSGFLLALLLLCLRIGELAQIMPNVAVGAFAIMVGLMLLVPMQS-AMRDGLNFLLSTVGRVLCPSSDVPFVEVLVADALCSLSRVFSDAGLAILVLAATWTSSAPPSQVTRVFVTATLACLPAVLRVRQCAILHFAEPDPARRRLHALNIGKYLSTLPPVLLGALHALAPPA--LDGVPLATAAAAAAAFNTAYCLAWDVRMDWGLGDLGAKAAGLRPTLLLGAHAP--YYAAIAADAALRCAWVRPLAALGYALALTDLTLVLELVEVCRRCMWAVLRLEWEAVQ 374          
BLAST of mRNA_H-elongata_contig17521.4564.1 vs. uniprot
Match: W7TLW9_9STRA (Protein-er retention protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TLW9_9STRA)

HSP 1 Score: 161 bits (408), Expect = 2.850e-39
Identity = 115/318 (36.16%), Postives = 164/318 (51.57%), Query Frame = 1
Query:   91 RQVVTTSGVFLGILLACIY-GSRLLLVPPTVAVGGFYFILGVALLVPLQAPSV-RDHTSLFFTSLAGVFFPATDIHLSEVLVADALTSLSRVFADVAVTFL--LVGRGWGVQYPGWCFRLI-----PCVFASCPYWVRVRQCATQLATEVDARRRRLLMINVGKYMSAFPVIWLTGYQAMRQDGGVITSSVLGNCIVAAALFNSIYSFAWDVKMDWGLGQ---PGA-----------KHWGLRNTLLISPEDPWPYYAAVALDLLLRLTWLARLA--DRWLRRTDLVLTLELIEVLRRSMWNVFRLEWECVQCLGGAR 969
            R+V+    V +  ++ CI   S LL  P   A   FYF+L  A++ P     + R+   LF   L  V  P T+IH  EVLV D LTSLS+VF +V +T +  L+    G+      FR++     P + AS P+ +R+RQC  Q       + R L+ +N+ KY S+ P +WL    A         +  +   ++   L NS+YSF WDV MDWGLG     GA           +HWGLR TLL        YYAA+ LDL+LRL W+ +    D  L     +L +E +EVLRR +W+++R+EWEC+   GG +
Sbjct:  114 RKVINLVTVLVLAMVFCILIMSELLGQPYQHAPFIFYFLLLAAVIYPSDTTLMFRELALLFGRVLWLVVLPGTEIHFLEVLVGDILTSLSKVFFEVGLTCVATLLSLSPGL------FRIVSPDIFPTLLASTPFILRIRQCVVQRRGTASGKARFLVSLNILKYCSSIPGLWLPLLLAPHYS-----TYQIERVLLVVLLVNSLYSFLWDVIMDWGLGHVKLTGAPKKGGGGAVRLRHWGLRPTLLFGSAGS--YYAAIGLDLVLRLVWVLKYVNFDHRLSYDKFMLLIECLEVLRRGIWSIYRIEWECLSINGGRK 418          
BLAST of mRNA_H-elongata_contig17521.4564.1 vs. uniprot
Match: A0A0L0FR54_9EUKA (EXS domain-containing protein (Fragment) n=2 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FR54_9EUKA)

HSP 1 Score: 128 bits (322), Expect = 9.230e-29
Identity = 80/227 (35.24%), Postives = 123/227 (54.19%), Query Frame = 1
Query:  292 FPATDIHLSEVLVADALTSLSRVFADVAVTFLLVG---RGWGVQ--YPGWCFRLIPCVFASCPYWVRVRQCATQLATEVDARRRRLLMINVGKYMSAFPVIWLTGYQAMRQDGGVITSSVLGNCIVAAALFNSIYSFAWDVKMDWGLGQPGAKHWGLRNTLLISPEDPWP-YYAAVALDLLLRLTWLARLADRW-LRRTDLVLTLELIEVLRRSMWNVFRLEWECVQ 951
            FP   I  +EV +AD LTSLS+VFAD    F  VG     W V    PG    L   +  S PY +R+RQC      E  A   +  ++N  KY SA+P IWL     M   G    S  L +  + A++ N++Y++ WD+  DWGL    + ++ LR  +++    P P YY  + +DL+LR  W  +L++   L   D ++  EL+E++RR++WN+ R+E+EC++
Sbjct:   98 FPGARISFAEVFIADGLTSLSKVFADFEQIFCFVGYHVHQWDVYDASPGCMSSLFLPIVVSIPYTIRLRQCLI----EYRAAGVQKDLVNAFKYASAYPPIWLGHALKMAPTG---QSPTLYSAWILASVVNTMYTYYWDLVWDWGLFDRTSPNYPLRARMML----PRPLYYMWILIDLILRCVWSVQLSNLLRLNSADKIILFELLEIIRRALWNIVRVEYECIK 313          
BLAST of mRNA_H-elongata_contig17521.4564.1 vs. uniprot
Match: A0A4P9XQW3_9FUNG (EXS family-domain-containing protein (Fragment) n=1 Tax=Thamnocephalis sphaerospora TaxID=78915 RepID=A0A4P9XQW3_9FUNG)

HSP 1 Score: 122 bits (307), Expect = 6.620e-27
Identity = 89/253 (35.18%), Postives = 123/253 (48.62%), Query Frame = 1
Query:  247 RDHTSLFFTSLAGVFFP--ATDIHLSEVLVADALTSLSRVFADVAVTFLLVGRGWGV--------QYPGWCFRLIPCVFASCPYWVRVRQCATQLATEVDARRRRLLMINVGKYMSAFPVIWLTGYQAMRQDGGVITSSVLGNCIVAAALFNSIYSFAWDVKMDWGLGQ---PGAKHWGLRNTLL---ISPEDPWPYYAAVALDLLLRLTWLARLADRWLRRTDLV---LTLELIEVLRRSMWNVFRLEWECV 948
            R     F  SL  + F   A+ +HL++V++AD LTS +RV AD+ V    V     +        Q     +  +  V  + PY +R++QC  + A   D   RR  + N  KY SAFPVI L+  Q +R    +     +  C+    LFNS YSF WDV +DW LG    P    W +    L   +   +P  YY A+ LD LLR TW  +L+   LR  +L      LE +EV+RR +W  FRLE E V
Sbjct:   95 RHKRFCFLRSLGRIIFGGLASPVHLADVVLADILTSFARVLADLYVVLCYVVTASSLDLAIHSLEQSTTCVYSWVGPVLVALPYMLRLKQCLIEAAQSRDWPSRRRHLANALKYASAFPVIILSAVQRLRSSDSIRAWENMFVCV----LFNSFYSFYWDVAVDWQLGPLSLPLTPQWEVHARYLRPMLHFSEPSIYYLAIVLDFLLRFTWSLKLSTH-LRLDELTAGGFVLEWLEVVRRWLWVYFRLEREWV 342          
BLAST of mRNA_H-elongata_contig17521.4564.1 vs. uniprot
Match: F2UM19_SALR5 (EXS domain-containing protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UM19_SALR5)

HSP 1 Score: 123 bits (308), Expect = 7.470e-27
Identity = 79/241 (32.78%), Postives = 123/241 (51.04%), Query Frame = 1
Query:  265 FFTSLAGVFFPATDIHLSEVLVADALTSLSRVFADVAVTFLLVGRGWGVQYPGWCFR----LIPCVFASCPYWVRVRQCATQLATEVDARRRRLLMINVGKYMSAFPVIWLTG--YQAMRQDGGVITS--SVLGNCIVAAALFNSIYSFAWDVKMDWGLGQ-PGAKHWGLRNTLLISPEDPWPYYAAVALDLLLRLTWLARLADRWLRRTD---LVLTLELIEVLRRSMWNVFRLEWECVQ 951
            FF      FF  +++   +VL ADALTS+S++ AD+ +    +     + +     R    ++  V AS PY +R  QC     +   +      ++N+GKY+S+FPVIW +   +Q    +G  +      L    +     N++YS+ WD+ MDWGL + P AKH  LR+ L    + PW YY A+A DL LRL W  +L+    +           E++EV RR +WN FR+EW+ +Q
Sbjct:  108 FFYERLHTFFTFSEVKFVDVLTADALTSMSKLLADMQIVVCSIVGVLSLNFDAGNTRCMHSVVAPVLASLPYLIRAIQCYRAYLSTGSSHH----LVNLGKYLSSFPVIWTSALKHQLAPVEGVRLDKHDQYLQLLWLYTVTINTLYSYLWDILMDWGLCRSPRAKHVLLRDDLHF--KRPWLYYTAMAGDLALRLCWSLKLSSHLQQHASGQAFAFLFEVLEVFRRFVWNFFRVEWQYIQ 342          
BLAST of mRNA_H-elongata_contig17521.4564.1 vs. uniprot
Match: A0A7S1IAN5_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1IAN5_9EUGL)

HSP 1 Score: 123 bits (309), Expect = 1.450e-26
Identity = 96/311 (30.87%), Postives = 146/311 (46.95%), Query Frame = 1
Query:   91 RQVVTTSGVFLGILLACIYGSRLLLVPPTVAVGGFYFILGVALLVPLQAPSVRDHTSLFFTSLAGVFFPATDIHLSEVLVADALTSLSRVFADVAVTFLLVGRGWGVQYPGWCFRL-----IPCVFASCPYWVRVRQCATQLATEVDARRRRLLMINVGKYMSAFPVIWLTGYQAMRQDGGVIT-SSVLGNCIVAAALFNSIYSFAWDVKMDWGLGQPGAKHWGLRNTLLISPEDPWPYYAAVALDLLLRLTWLARLADRW-----LRRTDLVLTLELIEVLRRSMWNVFRLEWECVQCLGGARPLRLDKG 990
            R V  T+ +F  +LLA I         P+  +    +I  + LL   ++P      +L     + +  P T +    V++AD LTS S+VFAD+  T  ++       +     +      I  + AS P W+R+ QC    +T  D  RR LL  N  KY +AFPV++   +  ++Q          L    + +   NS+YSF WD+  DWGLG   + +  LR+ L+      W YYA +  DLLLR TW  +L+  W     + R   +  LE +E+ RR MW  FR EW+ +     + P+R DKG
Sbjct:  120 RTVYCTASLFTVVLLANIVTFTQARGIPSTFIPLCLYISMLLLLCWPKSPFHNARYALLQALQSVMLSPFTGVAFVHVILADLLTSYSKVFADMYGTVCVISNSTDRHFHASILQACRNDPIGPIVASLPSWLRLFQCLKAYST--DGERRHLL--NALKYSTAFPVLF---FSYLKQGPSAEAWGPQLSQLWLLSVFVNSLYSFYWDIYYDWGLGSISSSNLLLRDRLVFPKR--WWYYATMVTDLLLRFTWSLQLSPHWWFIGSVGREFKMFVLEAVEIFRRCMWIFFRCEWQHI-----SHPIREDKG 416          
BLAST of mRNA_H-elongata_contig17521.4564.1 vs. uniprot
Match: A0A8K1FNJ1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FNJ1_PYTOL)

HSP 1 Score: 122 bits (307), Expect = 6.030e-26
Identity = 93/299 (31.10%), Postives = 140/299 (46.82%), Query Frame = 1
Query:  190 GFYFILGVALLVPLQAPSVRDHTSLFFTSLAGVFFPATDIHLS---------EVLVADALTSLSRVFADVAVTFLLVGRGW----GVQYPGWCFRL----IPCVFASCPYWVRVRQCATQLATEVDARRRRLLMINVGKYMSAFPVIWLTGY-QAMRQDGGVITSSVLGNCIVAAALFNSIYSFAWDVKMDWGLGQPGAKH--WGLRNTLLISPEDPWPYYAAVALDLLLRLTWLARLADRWLRRTDLVLTLELIEVLRRSMWNVFRLEWECVQC-LGGARPLRLDKGSEALKL*RVPM 1023
            G+ FI G+ L  P      +   S+    L+   +P  +  L          EV +AD LTSLS+   D AV ++L+   +    G     +  ++    +P   AS PY +R  QC         A  R L ++N  KY S+  VI +  Y Q M   G  +  + L    +  A+FNS+YSF WDV MDWGLGQP        LR+ L+  P   W YY  + +D  LR+ W+ +  D      D  +   + EV+RR +WNV R+EW+C++  + G++ L  D       L  +P+
Sbjct:  110 GYCFIAGLLLFCPFDIMHRKCRYSVI-RKLSRCLWPFQNFSLDLPPHPTPFVEVFLADGLTSLSKFIQDSAVAWMLLSLSFSQELGELRTSYVSKMKSSPLPYFAASMPYIIRATQCLISFHRTTSANDRFLHLLNTLKYCSSLLVISVGAYPQIMGHVGVRLEKNTL---FLFCAVFNSLYSFLWDVIMDWGLGQPNLPRRVMFLRHHLIYRPR--WIYYGVIVVDFALRILWVTKWWDWQHFGVDFKMLSMVAEVVRRVIWNVLRVEWQCIKLEILGSKKLSEDSMELEQSLENMPL 402          
BLAST of mRNA_H-elongata_contig17521.4564.1 vs. uniprot
Match: A0A7S1MLS0_ALECA (Hypothetical protein (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1MLS0_ALECA)

HSP 1 Score: 118 bits (295), Expect = 6.470e-26
Identity = 93/281 (33.10%), Postives = 134/281 (47.69%), Query Frame = 1
Query:  232 QAPSVRDHTSLFFTSLAGVFFP--ATDIHLSEVLVADALTSLSRVFADVAVTFLLVGRGWGVQYPG-W-------------------CFRL-IPCVFASCPYWVRVRQCATQLATEVDARRRRLLMINVGKYMSAFPVIWLTGYQAMRQDGGVITS-SVLGNCIVAAALFNSIYSFAWDVKMDWGLGQPG---AKHWGLRNTLLISPEDPWPYYAAVALDLLLRLTW-------LARLADRWLRRTDLVLTLELIEVLRRSMWNVFRLEWECVQCLGGARP 972
            +AP  R   + F  +L   F+P  A +    +VLVAD LTSL+R F D+A+      +  G   PG W                   C R  +P V  + P+ VR RQC        +A  R+L ++N+ KY+SA P++ L   +A   +G  I     LG   + A + N+++S+ WD+ MDWGL  P    +  +GLR  LL+  E    YY A+A D L R  W         RL   WL         + +EV RR +W+  R+EW+CV+  GG RP
Sbjct:    7 RAPPAR---AAFARALRRCFWPDAAKETPFVQVLVADGLTSLARAFFDIALGSCAALQAAGG--PGAWALTRGAGERPTLLGDALEQCGRSPLPYVAWAAPFLVRARQCWLSSRHAPEALSRQLHLLNLAKYLSALPIVCLAFLRAQASEGEDIEGLEFLG---LLAGVVNTVFSYLWDLAMDWGLLHPAPPLSGRFGLRPVLLLC-EGGGFYYLAIAADALARACWSLRWCPEAVRLGGFWLGSLQ-----QAVEVARRCLWSALRVEWQCVRTGGGPRP 273          
BLAST of mRNA_H-elongata_contig17521.4564.1 vs. uniprot
Match: J3NJS2_GAET3 (EXS domain-containing protein n=1 Tax=Gaeumannomyces tritici (strain R3-111a-1) TaxID=644352 RepID=J3NJS2_GAET3)

HSP 1 Score: 120 bits (302), Expect = 1.130e-25
Identity = 97/248 (39.11%), Postives = 125/248 (50.40%), Query Frame = 1
Query:  319 EVLVADALTSLSRVFADVAVT---FLLVGRGWGVQYPG---WCFRLIPCVFASCPYWVRVRQCATQLATEVDARRRRLL------MINVGKYMSAFPVIWLTGYQAMRQDGGVITSS--VLGNCIVAAALFNSIYSFAWDVKMDWGLGQPGAKH--------WGLRNTLLISPEDPWPYYAAVALDLLLRLTWLARL----ADRWLRRTDLVLTLELIEVLRRSMWNVFRLEWECVQCLGGARPLRLD 984
            ++L+AD LTS SRV AD+ V    FL  G       P         +P + A  PY +R+RQC T+      A  +  +      + N  KY +AFPVI L    A  + G   TSS  +LG   VAA L NS+YSF WDV  DW L    A+         +GLR  L ++P  P  YYAAVALDL LR TW+ R+    ADR       +  LEL+EVLRR +W  FR+E E V+       L +D
Sbjct:  162 DILLADVLTSYSRVLADLYVCVCMFLRSGNSAATAPPDRACGASLAVPLLLAL-PYAIRLRQCLTEYLRVRRAPYKESVGWGGQHLANAAKYATAFPVIALN---AAVRPGAPQTSSRPLLGRAWVAAVLLNSLYSFYWDVAKDWDLTLLSARRRAAAPDQPYGLRRRLHLAPGPP-AYYAAVALDLALRCTWVVRVVGPTADRASGLEGSIFALELLEVLRRWVWIFFRVETEHVRNTTTGHGLAVD 404          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17521.4564.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G030_ECTSI6.820e-17574.40EXS domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835YVP0_9STRA6.050e-5643.79EXS family-domain-containing protein n=1 Tax=Tribo... [more]
W7TLW9_9STRA2.850e-3936.16Protein-er retention protein n=3 Tax=Monodopsidace... [more]
A0A0L0FR54_9EUKA9.230e-2935.24EXS domain-containing protein (Fragment) n=2 Tax=S... [more]
A0A4P9XQW3_9FUNG6.620e-2735.18EXS family-domain-containing protein (Fragment) n=... [more]
F2UM19_SALR57.470e-2732.78EXS domain-containing protein n=1 Tax=Salpingoeca ... [more]
A0A7S1IAN5_9EUGL1.450e-2630.87Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A8K1FNJ1_PYTOL6.030e-2631.10Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S1MLS0_ALECA6.470e-2633.10Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
J3NJS2_GAET31.130e-2539.11EXS domain-containing protein n=1 Tax=Gaeumannomyc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17521contigH-elongata_contig17521:1033..5054 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score518.1
Seed ortholog evalue3.1e-144
Seed eggNOG ortholog2880.D7G030
EggNOG free text desc.phosphate ion transport
EggNOG OGsCOG5409@1,KOG1162@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal anchor
Exons5
Model size2053
Cds size1011
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17521.4564.1prot_H-elongata_contig17521.4564.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17521 2074..5054 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930016.2287416-UTR-H-elongata_contig17521:1032..20731622930016.2287416-UTR-H-elongata_contig17521:1032..2073Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17521 1033..2073 -
1691679247.100545-UTR-H-elongata_contig17521:1032..20731691679247.100545-UTR-H-elongata_contig17521:1032..2073Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17521 1033..2073 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930016.2433443-CDS-H-elongata_contig17521:2073..21871622930016.2433443-CDS-H-elongata_contig17521:2073..2187Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17521 2074..2187 -
1691679247.1111774-CDS-H-elongata_contig17521:2073..21871691679247.1111774-CDS-H-elongata_contig17521:2073..2187Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17521 2074..2187 -
1622930016.26484-CDS-H-elongata_contig17521:2821..30911622930016.26484-CDS-H-elongata_contig17521:2821..3091Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17521 2822..3091 -
1691679247.124386-CDS-H-elongata_contig17521:2821..30911691679247.124386-CDS-H-elongata_contig17521:2821..3091Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17521 2822..3091 -
1622930016.290643-CDS-H-elongata_contig17521:3658..38151622930016.290643-CDS-H-elongata_contig17521:3658..3815Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17521 3659..3815 -
1691679247.1354642-CDS-H-elongata_contig17521:3658..38151691679247.1354642-CDS-H-elongata_contig17521:3658..3815Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17521 3659..3815 -
1622930016.307913-CDS-H-elongata_contig17521:4367..45891622930016.307913-CDS-H-elongata_contig17521:4367..4589Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17521 4368..4589 -
1691679247.1436124-CDS-H-elongata_contig17521:4367..45891691679247.1436124-CDS-H-elongata_contig17521:4367..4589Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17521 4368..4589 -
1622930016.3252208-CDS-H-elongata_contig17521:4806..50541622930016.3252208-CDS-H-elongata_contig17521:4806..5054Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17521 4807..5054 -
1691679247.1516154-CDS-H-elongata_contig17521:4806..50541691679247.1516154-CDS-H-elongata_contig17521:4806..5054Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17521 4807..5054 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17521.4564.1

>prot_H-elongata_contig17521.4564.1 ID=prot_H-elongata_contig17521.4564.1|Name=mRNA_H-elongata_contig17521.4564.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=337bp
SGPRVAIEDDEPEDTTRKDKPHRVPVPPSWRQVVTTSGVFLGILLACIYG
SRLLLVPPTVAVGGFYFILGVALLVPLQAPSVRDHTSLFFTSLAGVFFPA
TDIHLSEVLVADALTSLSRVFADVAVTFLLVGRGWGVQYPGWCFRLIPCV
FASCPYWVRVRQCATQLATEVDARRRRLLMINVGKYMSAFPVIWLTGYQA
MRQDGGVITSSVLGNCIVAAALFNSIYSFAWDVKMDWGLGQPGAKHWGLR
NTLLISPEDPWPYYAAVALDLLLRLTWLARLADRWLRRTDLVLTLELIEV
LRRSMWNVFRLEWECVQCLGGARPLRLDKGSEALKL*
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mRNA from alignment at H-elongata_contig17521:1033..5054-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17521.4564.1 ID=mRNA_H-elongata_contig17521.4564.1|Name=mRNA_H-elongata_contig17521.4564.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4022bp|location=Sequence derived from alignment at H-elongata_contig17521:1033..5054- (Himanthalia elongata Himel1 dioecious)
TCAGGCCCCCGTGTAGCCATCGAAGATGACGAGCCGGAGGACACGACTCG GAAGGACAAGCCGCACCGCGTGCCGGTGCCACCCAGCTGGCGCCAGGTGG TGACGACATCGGGCGTGTTCCTCGGCATCCTCTTGGCCTGCATCTACGGC TCGCGACTGCTTCTGGTACCCCCCACGGTGGCCGTCGGAGGCTTTTACTT CATCCTGGGAGTAGCGCTGCTCGTGCCGCTGCAGGCACCGTCTGTCAGGT GCTAGGTCTCCGGGTTGGGTTTTGGGGTTAGCGGAGGAGGCGACGACCTA CAACATCGCGCTATGCTCAAATTTCTTCGCGGCCGTCTCAAGCCACCACC ATATCGACCTCAAGCCTTAACAAACGTTATCCTCCCTTCCTTTTGCTGCT GCTACTGCTGCTACTGCTGCTGCTCGTGTATGGGCCTGTTACCGCCCGGG CGCACGCACACTCAGGGACCACACATCCTTGTTCTTCACGTCCTTGGCGG GCGTCTTTTTCCCCGCCACGGACATCCACTTGTCGGAGGTGCTCGTGGCC GACGCGCTGACAAGCCTGTCTCGCGTCTTCGCCGACGTGGCCGTGACCTT TCTGCTGGTCGGAAGGGGTTGGGGAGTGCAGTACCCCGGGTGGTGCTTCC GCCTAATTCCGTGCGTCTTCGCCAGCTGCCCCTATTGGTGAGAGAACGAG CTGAGCTCTGCCACCCCCCAGATCTTGCAAGGATACAACAGAGTAGAGCA GCCAAAAAGCTGGACGAAATGCGCGTGTGTGCCGGTGCACGCGAGACCCG CTTGGGGGGTGGCAACATGACAGGTGGATGCAGTTGGGAGTTGTAATTAT TAGCACGAGCAGGCGTCGTGGTGGCGGGGGAATAGAGGATCGGGTCGTCG GTCTCTGTTTATAATCCCATTCATTTTTATCAGCAATAACAGCAGCAGCA GTAGCAATGGCGGGTAAGCTCTACTGGGCCGGATTTTGTGTCTCCTGTAA CTTTTCTATCAATTGCTCTTCTCCCTATTATGGCAATCGACCGCGCCGTA TCGTTTCGAGGTTGTCACTCGTGTCTTGGAATATAACTAATAGAAAATCA CTTCGCGCGCCCGAAAAAAAACAGCCCACCGACTCAAAACCCCTTCCAGA CTTCTTAAGAACTCCCTCGCCGCTGTCCCCACTTCGTGTCCTTCTGCGCG GGGTATCCCGTAAAACACCAATCGGGGGTGGGGGAGAAGGGTTCGAGTTC GGCAATGCGCGACGCAGCTTGCCACCGAGGTGGATGCGCGGCGGCGGCGG CTGCTGATGATCAACGTGGGAAAGTACATGAGCGCCTTCCCGGTGATCTG GCTAACGGGGTATCAGGCCATGCGCCAGGACGGCGGCGTGATCACGGTGA TTTTTTTATCGCGGCCTTGGACGCATATATTGATACATTATTTTTAGGTT TTTATTTAATACATAAGTGTATGTGTGTATGTGTTCGTTTACGAAGGACA TAAGCAACAAAACACTGTGCGTATAACTGAATGTTAAATCTGCGAGGGGG AGGATATGTAGGTTGTCCGGCCCGGGCGTGTGCACCATAGACCCGACCAC CCCTTGTACACACCACGCCTACATCGCCATTTTGTCAGCCTCTTTCGTGT TGATATATCTCGGAGGAAGGGTTATATTGTTAATGGTGTTGATGCTGATG ATGATGCTTGTGGTCTTACGCCACCCTGCCGCTACCATTTGTTGTTTTTT TCATCGATTAATAGTGTCGTTCGACAACGAGTTAGTACCCACACATCATT TACACCGGTGCTGTTAAAGCTGCAGCCGTTCTATTACACGTCCCGTCGGG TGCCCTCCCCCCCCCACACACACACCCTAACTTGCAGCCCCTCCGTCCTG GAAACCCCGTGTGTGAATGTGTATGTGTGTCACTCACCCCTACTCTTCCA CCCGTTTTTGCAGTCGTCGGTGTTAGGCAACTGCATTGTGGCCGCGGCGC TGTTCAACTCGATTTACTCCTTTGCGTGGGACGTGAAGATGGATTGGGGC TTGGGGCAGCCGGGAGCAAAGCACTGGGGTTTGCGCAACACCCTCCTGAT CAGCCCGGAGGATCCCTGGCCTTACTACGCCGCAGTGGCGCTCGACCTCC TGCTGCGTCTCACCTGGCTGGCGCGCCTGGCGGACAGGTGGCTCCGACGA ACGGACCTCGTGCTGACGCTGGAGCTAATCGAGGTAGGCGTAAGAGTGTA CATCGAGGAGAGAGGGGGGGGTGGCGGATTCCGTCTTGCCTATCAATAGT AAGAAATGAAAGGCATAGTAGTGTGTGATGTGTGATTAGTGTAGTGTAGA TTTGTACTCTGGGAGGGGGGGAAGAGTTCGAGACGGGGGGGAAATATGTC GCCGCCCTTCCTTTTTTCTTTCCGTTTCGTGTGGAAAATAAAACAGCGAC AAGGAGACGCCACGTCCGATTTATTCGTCTCACTGCGCGCTTCGTTCGTC TGTCTCACCTTTACCTTTCTCACATCATGTGTGGCAGTCAGTCAGTCAGT CAGCGTGTGTGTGTGTGAGTGCGTGTTTTTTCGAGAGGCGGGGGGGGAAG AAGAGGGGAAATATCTTGACGCCCCTGATTGGGGAAGGGGGTAGGTTAAA TGCGTCCCATTTCGACGACAGTACGTATCTATCCCTGTTCTACAATGACC ATGTATTCCTCGTGAAGCGCCACGATCGAGACTACGACGATTGAAGGGGA CGAAATTTGACTCTCCCCTCCTCTGCCGTGGCACCCCCTCCCCCTATCTT TGGATTGATCCTTACGAGCTAATCCCTTTCTATTCTTGTAAAACCCCGCT GCTCTGCCGAACCTCAGGTATTGCGTCGCTCGATGTGGAATGTGTTTCGG CTCGAGTGGGAGTGCGTTCAATGCCTCGGAGGGGCGAGACCGTTGCGCTT AGACAAGGGCTCGGAGGCGCTGAAACTTTGACGAGTTCCGATGAGCTTGG CGGAGAAAGTACGGGGGGGGGGGTCGTCGTTGTCGCAATAACGCCCAAAT CTTCCTGGTAGAGTAGCCCCTCCCTCCGACCAGGCAAGCCAGCGGGTAGA AAATGTGACGTAAACTAACAGACTATGGTACGCTGAATAATCAGCCAGTC CTATTTCGAGTGTGTAAATGTGTGTGTGTTTTGTGTGTGTGGATGTGGTC ATCACGTATTACAGTATTAATAGTATAGTATATAAGCTTTAGTATGGATC AACCAGATATGGCTGTCAATCCTGCTCGTGGTCATGACGTCAGCTGAACT GAGCAGGGGAAGGTCAGCTGAGCAGGGGAAATTATTTTTTTGCTGTCCCC GTTCGCGTCTGAAGATTTTGTTTTGTGCGAGATGAAGGGTTCAAGTCCTT GGGGCCCTCGTCTACTGTAATCTGGGTGGGGATTCTTGTTTGGTTGTGGA GAGCTCGAGGGTGAAAGTTACTAGTTCGAGAGCCAGAGAAGACAAGTAAG TTACTCTGTCCGCGGAGCCCCACAGGCGCGCTCACCCAGTTGGGGTTGAC GGCCTTGGAGGGATCGGAAGGGGGGGGTAAATCTGACCACATCCCTAATG CTGTGAGTGACCACAGCCCTAGTGCTGTGAGCTTTTGCAGTCAGATAAAG AGACAACTCACGACGATATTTTTAGTCACAAATGATATGCGTGGACCCTG TTCGCATGGTGTTGGGAGGCTATGCTGTGACGGCCTTAGTGCCTCCACCA AATATTTTAGAGGGTGTGCGTCAGTCGAGAAGAGGGTTTAGGGGGGCGCC TTGGAGGACGGTGAGGATGGAGGCGTTTTGTTGTGGGGGTCTCATTCGGC ATGAAAATGAAAAGGGTTTTGATGCTTAGATATGTGGATGCATCTCCTGC GTGAGACCCGATTAACGTAAATGCTTGTGTGTATATGTGTGTCTGTGTGT GTTTATGTTTATTTGGGGAGGGTGAACGGGGTTGGGGGGAATCGCCAGCT TCTCTTTTTTTTTTATATAGCC
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Coding sequence (CDS) from alignment at H-elongata_contig17521:1033..5054-

>mRNA_H-elongata_contig17521.4564.1 ID=mRNA_H-elongata_contig17521.4564.1|Name=mRNA_H-elongata_contig17521.4564.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2022bp|location=Sequence derived from alignment at H-elongata_contig17521:1033..5054- (Himanthalia elongata Himel1 dioecious)
TCAGGCCCCCGTGTAGCCATCGAAGATGACGAGCCGGAGGACACGACTCG
GAAGGACAAGCCGCACCGCGTGCCGGTGCCACCCAGCTGGCGCCAGGTGG
TGACGACATCGGGCGTGTTCCTCGGCATCCTCTTGGCCTGCATCTACGGC
TCGCGACTGCTTCTGGTACCCCCCACGGTGGCCGTCGGAGGCTTTTACTT
CATCCTGGGAGTAGCGCTGCTCGTGCCGCTGCAGGCACCGTCTGTCAGTC
AGGCCCCCGTGTAGCCATCGAAGATGACGAGCCGGAGGACACGACTCGGA
AGGACAAGCCGCACCGCGTGCCGGTGCCACCCAGCTGGCGCCAGGTGGTG
ACGACATCGGGCGTGTTCCTCGGCATCCTCTTGGCCTGCATCTACGGCTC
GCGACTGCTTCTGGTACCCCCCACGGTGGCCGTCGGAGGCTTTTACTTCA
TCCTGGGAGTAGCGCTGCTCGTGCCGCTGCAGGCACCGTCTGTCAGGGAC
CACACATCCTTGTTCTTCACGTCCTTGGCGGGCGTCTTTTTCCCCGCCAC
GGACATCCACTTGTCGGAGGTGCTCGTGGCCGACGCGCTGACAAGCCTGT
CTCGCGTCTTCGCCGACGTGGCCGTGACCTTTCTGCTGGTCGGAAGGGGT
TGGGGAGTGCAGTACCCCGGGTGGTGCTTCCGCCTAATTCCGTGCGTCTT
CGCCAGCTGCCCCTATTGGGACCACACATCCTTGTTCTTCACGTCCTTGG
CGGGCGTCTTTTTCCCCGCCACGGACATCCACTTGTCGGAGGTGCTCGTG
GCCGACGCGCTGACAAGCCTGTCTCGCGTCTTCGCCGACGTGGCCGTGAC
CTTTCTGCTGGTCGGAAGGGGTTGGGGAGTGCAGTACCCCGGGTGGTGCT
TCCGCCTAATTCCGTGCGTCTTCGCCAGCTGCCCCTATTGGGTTCGAGTT
CGGCAATGCGCGACGCAGCTTGCCACCGAGGTGGATGCGCGGCGGCGGCG
GCTGCTGATGATCAACGTGGGAAAGTACATGAGCGCCTTCCCGGTGATCT
GGCTAACGGGGTATCAGGCCATGCGCCAGGACGGCGGCGTGATCACGGGT
TCGAGTTCGGCAATGCGCGACGCAGCTTGCCACCGAGGTGGATGCGCGGC
GGCGGCGGCTGCTGATGATCAACGTGGGAAAGTACATGAGCGCCTTCCCG
GTGATCTGGCTAACGGGGTATCAGGCCATGCGCCAGGACGGCGGCGTGAT
CACGTCGTCGGTGTTAGGCAACTGCATTGTGGCCGCGGCGCTGTTCAACT
CGATTTACTCCTTTGCGTGGGACGTGAAGATGGATTGGGGCTTGGGGCAG
CCGGGAGCAAAGCACTGGGGTTTGCGCAACACCCTCCTGATCAGCCCGGA
GGATCCCTGGCCTTACTACGCCGCAGTGGCGCTCGACCTCCTGCTGCGTC
TCACCTGGCTGGCGCGCCTGGCGGACAGGTGGCTCCGACGAACGGACCTC
GTGCTGACGCTGGAGCTAATCGAGTCGTCGGTGTTAGGCAACTGCATTGT
GGCCGCGGCGCTGTTCAACTCGATTTACTCCTTTGCGTGGGACGTGAAGA
TGGATTGGGGCTTGGGGCAGCCGGGAGCAAAGCACTGGGGTTTGCGCAAC
ACCCTCCTGATCAGCCCGGAGGATCCCTGGCCTTACTACGCCGCAGTGGC
GCTCGACCTCCTGCTGCGTCTCACCTGGCTGGCGCGCCTGGCGGACAGGT
GGCTCCGACGAACGGACCTCGTGCTGACGCTGGAGCTAATCGAGGTATTG
CGTCGCTCGATGTGGAATGTGTTTCGGCTCGAGTGGGAGTGCGTTCAATG
CCTCGGAGGGGCGAGACCGTTGCGCTTAGACAAGGGCTCGGAGGCGCTGA
AACTTTGAGTATTGCGTCGCTCGATGTGGAATGTGTTTCGGCTCGAGTGG
GAGTGCGTTCAATGCCTCGGAGGGGCGAGACCGTTGCGCTTAGACAAGGG
CTCGGAGGCGCTGAAACTTTGA
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