mRNA_H-elongata_contig175058.4559.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig175058.4559.1
Unique NamemRNA_H-elongata_contig175058.4559.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig175058.4559.1 vs. uniprot
Match: D7FTG3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTG3_ECTSI)

HSP 1 Score: 93.6 bits (231), Expect = 7.490e-21
Identity = 41/54 (75.93%), Postives = 47/54 (87.04%), Query Frame = 1 
Query:    1 RMFIWESESGRLVRAVEADSQIVNCVTPHPSLPVVATSGLENVVRLWSPLGAEE 162
            R+FIWE  SGRLVRA++AD QIVNCV PHPSLPV+ATSGLE+V R+WSP G EE
Sbjct:  749 RVFIWERSSGRLVRAIKADDQIVNCVAPHPSLPVLATSGLESVARIWSPRGEEE 802
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BLAST of mRNA_H-elongata_contig175058.4559.1 vs. uniprot
Match: A0A8C4RAR3_EPTBU (Uncharacterized protein n=1 Tax=Eptatretus burgeri TaxID=7764 RepID=A0A8C4RAR3_EPTBU)

HSP 1 Score: 73.9 bits (180), Expect = 2.890e-15
Identity = 28/52 (53.85%), Postives = 41/52 (78.85%), Query Frame = 1 
Query:    4 MFIWESESGRLVRAVEADSQIVNCVTPHPSLPVVATSGLENVVRLWSPLGAE 159
            +F+WE +SGRLV+ +EAD+ ++NC+ PHPS PV+ TSG++  V+LWSP   E
Sbjct:   32 VFVWELDSGRLVKLLEADNHVINCLQPHPSQPVIVTSGIDYDVKLWSPTSPE 83
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BLAST of mRNA_H-elongata_contig175058.4559.1 vs. uniprot
Match: A0A8C4RBV7_EPTBU (Uncharacterized protein n=1 Tax=Eptatretus burgeri TaxID=7764 RepID=A0A8C4RBV7_EPTBU)

HSP 1 Score: 73.9 bits (180), Expect = 4.030e-15
Identity = 28/52 (53.85%), Postives = 41/52 (78.85%), Query Frame = 1 
Query:    4 MFIWESESGRLVRAVEADSQIVNCVTPHPSLPVVATSGLENVVRLWSPLGAE 159
            +F+WE +SGRLV+ +EAD+ ++NC+ PHPS PV+ TSG++  V+LWSP   E
Sbjct:   32 VFVWELDSGRLVKLLEADNHVINCLQPHPSQPVIVTSGIDYDVKLWSPTSPE 83
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BLAST of mRNA_H-elongata_contig175058.4559.1 vs. uniprot
Match: A0A6J0MIK7_RAPSA (DDB1- and CUL4-associated factor 8 n=1 Tax=Raphanus sativus TaxID=3726 RepID=A0A6J0MIK7_RAPSA)

HSP 1 Score: 76.3 bits (186), Expect = 9.020e-15
Identity = 31/59 (52.54%), Postives = 44/59 (74.58%), Query Frame = 1 
Query:    1 RMFIWESESGRLVRAVEADSQIVNCVTPHPSLPVVATSGLENVVRLWSPLGAEEGSADD 177
            R+FIW+ +SG LVR +EAD  IVNC+ PHP LPV+A+SG+EN +++W+   AE  +  D
Sbjct:  346 RIFIWKKKSGELVRVMEADRYIVNCIEPHPHLPVLASSGIENDIKVWTSKAAERATLPD 404
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BLAST of mRNA_H-elongata_contig175058.4559.1 vs. uniprot
Match: A0A485LQN6_9STRA (Aste57867_24505 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LQN6_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 9.230e-15
Identity = 33/50 (66.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:    1 RMFIWESESGRLVRAVEADSQIVNCVTPHPSLPVVATSGLENVVRLWSPL 150
            R +IWE ESG+LV A++AD  IVNCV  HP  P +ATSG+ENVVRLW+PL
Sbjct:  569 RAYIWEKESGQLVNALQADEDIVNCVQCHPFQPCLATSGIENVVRLWNPL 618
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BLAST of mRNA_H-elongata_contig175058.4559.1 vs. uniprot
Match: D0N9Z5_PHYIT (Uncharacterized protein n=13 Tax=Phytophthora TaxID=4783 RepID=D0N9Z5_PHYIT)

HSP 1 Score: 76.3 bits (186), Expect = 9.230e-15
Identity = 32/59 (54.24%), Postives = 41/59 (69.49%), Query Frame = 1 
Query:    1 RMFIWESESGRLVRAVEADSQIVNCVTPHPSLPVVATSGLENVVRLWSPLGAEEGSADD 177
            R  +W+  +G LV A+EAD+ IVNCV PHP    +ATSG+ENV+RLWSP   EE +  D
Sbjct:  586 RALVWDKATGELVNAIEADADIVNCVQPHPFDACLATSGIENVIRLWSPTSGEENTPTD 644
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BLAST of mRNA_H-elongata_contig175058.4559.1 vs. uniprot
Match: A0A1V9ZAZ0_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZAZ0_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 1.260e-14
Identity = 35/58 (60.34%), Postives = 43/58 (74.14%), Query Frame = 1 
Query:    7 FIWESESGRLVRAVEADSQIVNCVTPHPSLPVVATSGLENVVRLWSPLGAEEGSADDE 180
            ++W + +GRLV A  AD  IVNCV  HPSLPV+ATSG+E+VVRLWSPL   + S  DE
Sbjct:  580 YVWATATGRLVTAFRADEDIVNCVQGHPSLPVLATSGIESVVRLWSPLADVDVSPLDE 637
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BLAST of mRNA_H-elongata_contig175058.4559.1 vs. uniprot
Match: A0A8K1FIH9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FIH9_PYTOL)

HSP 1 Score: 75.9 bits (185), Expect = 1.260e-14
Identity = 30/60 (50.00%), Postives = 45/60 (75.00%), Query Frame = 1 
Query:    1 RMFIWESESGRLVRAVEADSQIVNCVTPHPSLPVVATSGLENVVRLWSPLGAEEGSADDE 180
            R +IW+  +GRL+ ++EAD+ IVNCV PHP    +ATSG+ENV+RLW+P G ++ +  D+
Sbjct:  607 RAYIWDKHTGRLLNSIEADADIVNCVQPHPVDTCLATSGIENVIRLWTPTGDDDTAPSDD 666
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BLAST of mRNA_H-elongata_contig175058.4559.1 vs. uniprot
Match: A0A8K0KNQ7_LADFU (Uncharacterized protein n=1 Tax=Ladona fulva TaxID=123851 RepID=A0A8K0KNQ7_LADFU)

HSP 1 Score: 73.2 bits (178), Expect = 1.280e-14
Identity = 27/52 (51.92%), Postives = 43/52 (82.69%), Query Frame = 1 
Query:    4 MFIWESESGRLVRAVEADSQIVNCVTPHPSLPVVATSGLENVVRLWSPLGAE 159
            +F+WE ++GRLV  +EAD+ +VNC+ PHP+LP++ATSG++  V+LW+P+  E
Sbjct:   75 VFVWERDTGRLVMLLEADAHVVNCLQPHPTLPLLATSGIDYDVKLWAPIAPE 126
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BLAST of mRNA_H-elongata_contig175058.4559.1 vs. uniprot
Match: A0A421GM84_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421GM84_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 1.480e-14
Identity = 29/56 (51.79%), Postives = 39/56 (69.64%), Query Frame = 1 
Query:    1 RMFIWESESGRLVRAVEADSQIVNCVTPHPSLPVVATSGLENVVRLWSPLGAEEGS 168
            R  +W+  +G LV A++AD+ IVNCV PHP    +ATSG+ENV+RLWSP    E +
Sbjct:   70 RALVWDKATGELVNAIDADADIVNCVQPHPFDACIATSGIENVIRLWSPTSGNENT 125
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig175058.4559.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTG3_ECTSI7.490e-2175.93Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A8C4RAR3_EPTBU2.890e-1553.85Uncharacterized protein n=1 Tax=Eptatretus burgeri... [more]
A0A8C4RBV7_EPTBU4.030e-1553.85Uncharacterized protein n=1 Tax=Eptatretus burgeri... [more]
A0A6J0MIK7_RAPSA9.020e-1552.54DDB1- and CUL4-associated factor 8 n=1 Tax=Raphanu... [more]
A0A485LQN6_9STRA9.230e-1566.00Aste57867_24505 protein n=1 Tax=Aphanomyces stella... [more]
D0N9Z5_PHYIT9.230e-1554.24Uncharacterized protein n=13 Tax=Phytophthora TaxI... [more]
A0A1V9ZAZ0_9STRA1.260e-1460.34Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A8K1FIH9_PYTOL1.260e-1450.00Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A8K0KNQ7_LADFU1.280e-1451.92Uncharacterized protein n=1 Tax=Ladona fulva TaxID... [more]
A0A421GM84_9STRA1.480e-1451.79Uncharacterized protein n=2 Tax=Phytophthora kerno... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig175058contigH-elongata_contig175058:335..859 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.0
Seed ortholog evalue9.7e-17
Seed eggNOG ortholog2880.D7FTG3
Preferred nameWDTC1
KEGG rclassRC00003,RC00060,RC00181,RC00496
KEGG koko:K11795,ko:K11804,ko:K11807,ko:K19199
KEGG ReactionR03875,R04866,R04867
KEGG Pathwayko00310,map00310
GOsGO:0000122,GO:0000151,GO:0001101,GO:0001701,GO:0003674,GO:0004857,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006006,GO:0006355,GO:0006357,GO:0006464,GO:0006629,GO:0006807,GO:0006950,GO:0007275,GO:0008150,GO:0008152,GO:0008361,GO:0009269,GO:0009414,GO:0009415,GO:0009628,GO:0009719,GO:0009725,GO:0009790,GO:0009792,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010033,GO:0010035,GO:0010243,GO:0010468,GO:0010556,GO:0010558,GO:0010565,GO:0010605,GO:0010629,GO:0010883,GO:0010888,GO:0010889,GO:0010891,GO:0016043,GO:0019216,GO:0019217,GO:0019219,GO:0019222,GO:0019318,GO:0019538,GO:0019725,GO:0019899,GO:0030234,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031461,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032535,GO:0032868,GO:0032869,GO:0032870,GO:0032879,GO:0032991,GO:0035264,GO:0036211,GO:0040007,GO:0042221,GO:0042304,GO:0042393,GO:0042592,GO:0042826,GO:0043009,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043434,GO:0043687,GO:0044092,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045717,GO:0045833,GO:0045892,GO:0045922,GO:0045934,GO:0046890,GO:0048519,GO:0048523,GO:0048589,GO:0048856,GO:0048878,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051055,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051716,GO:0055082,GO:0060255,GO:0062012,GO:0062014,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070647,GO:0070887,GO:0071310,GO:0071375,GO:0071417,GO:0071495,GO:0071704,GO:0071840,GO:0080008,GO:0080090,GO:0090066,GO:0098772,GO:1901564,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1905952,GO:1905953,GO:1990234,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.negative regulation of fatty acid biosynthetic process
EggNOG OGsKOG1310@2759,KOG1334@1
EC2.1.1.43
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036,ko04121
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size180
Cds size177
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig175058.4559.1prot_H-elongata_contig175058.4559.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig175058 335..856 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930015.6233737-CDS-H-elongata_contig175058:334..4011622930015.6233737-CDS-H-elongata_contig175058:334..401Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig175058 335..401 -
1691679246.8795934-CDS-H-elongata_contig175058:334..4011691679246.8795934-CDS-H-elongata_contig175058:334..401Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig175058 335..401 -
1622930015.637809-CDS-H-elongata_contig175058:746..8561622930015.637809-CDS-H-elongata_contig175058:746..856Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig175058 747..856 -
1691679246.8894656-CDS-H-elongata_contig175058:746..8561691679246.8894656-CDS-H-elongata_contig175058:746..856Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig175058 747..856 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930015.6628168-UTR-H-elongata_contig175058:856..8591622930015.6628168-UTR-H-elongata_contig175058:856..859Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig175058 857..859 -
1691679246.897004-UTR-H-elongata_contig175058:856..8591691679246.897004-UTR-H-elongata_contig175058:856..859Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig175058 857..859 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig175058.4559.1

>prot_H-elongata_contig175058.4559.1 ID=prot_H-elongata_contig175058.4559.1|Name=mRNA_H-elongata_contig175058.4559.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=59bp
MFIWESESGRLVRAVEADSQIVNCVTPHPSLPVVATSGLENVVRLWSPLG
AEEGSADDE
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mRNA from alignment at H-elongata_contig175058:335..859-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig175058.4559.1 ID=mRNA_H-elongata_contig175058.4559.1|Name=mRNA_H-elongata_contig175058.4559.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=525bp|location=Sequence derived from alignment at H-elongata_contig175058:335..859- (Himanthalia elongata Himel1 dioecious)
AGGATGTTCATCTGGGAGAGCGAATCCGGTCGGCTGGTACGGGCAGTCGA
GGCGGACAGCCAGATCGTGAACTGCGTCACCCCACACCCTTCTCTACCAG
TGGTCGCCACGAGGTCAATCCGTCCAATCCGTCCGCCGTTTATAAAGGGC
ATATTAGTGTACAGTAATATACTACCGAAGTAGTATAGTATAAGGGATCT
TAGTATACTGTATACCAGTATATTGTAGTATAAGGGATCTAGTATAGTAC
AGCATGCTACATAGTATAGTACTGTTGTTCTTGTTAAGGACGTGGGGTTT
CTCAAGTCTTCCATTTCCCCCGAGAGATCAGCTCGTTATTGCCTTGGTGG
TCAGTTTTGTAAATGCCGTTTACCCCACCGCCGTCGCGACATGAAACCGA
AAAACACCGGTTCGCGGGGCAAACCCGACACGGAATTTTTCGATCGCATC
TCTGACAGTGGGCTGGAAAACGTGGTGAGGCTGTGGAGCCCCCTTGGAGC
GGAAGAGGGCTCCGCGGACGACGAA
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Coding sequence (CDS) from alignment at H-elongata_contig175058:335..859-

>mRNA_H-elongata_contig175058.4559.1 ID=mRNA_H-elongata_contig175058.4559.1|Name=mRNA_H-elongata_contig175058.4559.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=354bp|location=Sequence derived from alignment at H-elongata_contig175058:335..859- (Himanthalia elongata Himel1 dioecious)
ATGTTCATCTGGGAGAGCGAATCCGGTCGGCTGGTACGGGCAGTCGAGGC
GGACAGCCAGATCGTGAACTGCGTCACCCCACACCCTTCTCTACCAGTGG
TCGCCACGAGATGTTCATCTGGGAGAGCGAATCCGGTCGGCTGGTACGGG
CAGTCGAGGCGGACAGCCAGATCGTGAACTGCGTCACCCCACACCCTTCT
CTACCAGTGGTCGCCACGAGTGGGCTGGAAAACGTGGTGAGGCTGTGGAG
CCCCCTTGGAGCGGAAGAGGGCTCCGCGGACGACGAATGGGCTGGAAAAC
GTGGTGAGGCTGTGGAGCCCCCTTGGAGCGGAAGAGGGCTCCGCGGACGA
CGAA
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