mRNA_H-elongata_contig17481.4548.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17481.4548.1
Unique NamemRNA_H-elongata_contig17481.4548.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig17481.4548.1 vs. uniprot
Match: A0A6H5JNU2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JNU2_9PHAE)

HSP 1 Score: 543 bits (1400), Expect = 8.730e-166
Identity = 397/952 (41.70%), Postives = 470/952 (49.37%), Query Frame = 1 
Query:  298 MTFHLDVLDGAGQPARATFSTLYSEPSFMPTIPKTGRPSVTAELSVPAVGRAGRGTTLG--------GSKNANGAA---TGASAAAGVRWKGG-------------IGSSRCPEDVSLAVLVRRGGAVRSPVSFDTSRSRGWSVVAVDMVNLMREGRG----GGGKGYKALRGVRLGANMVVRGVYVSDCVYSPRTLPKEMTFRVSGGG-EWEETYGWQWLPEIPDENAVPXXXXXLQESARSTRPAWPPGASSPTPSVAAANAIDAHGRRRMEKRHFRTQPGTLGKILAHDED----------------------GGQGNEVCIRLFSGSNGL-------IVAGEKGVS*LPAVSPSPGGGSPASLSWRKKAXXXXXXXXXXXXXXXXXMSPATGSRSKSVGAGRCPHPSTPPHTTANVIATPTRTRPARALGAGHSAAATAATT-PRSKTPSRFLRHRGHPP---PSPVATKGKPPLSPTTCRRARDTPPSRFRKKAF--------------FCDEDGDNVG-NGNRNGDANADDSDER------SGNWTR--QELEEWAAGDPAPPTPSVAVVD---------------------GSGAAKRPGKSARG--GPDAPVVTRVLPPGLETCRSEPPEFEPDPALRLERALCYTGGRRG---TVAFVG-GAAFVAFPCNNIIILMETPVMPEFSRQGGENGDGSLGGNIGGKNRGIEEEKD---------------EEPLSSPHLFLRGHTDTVTLLRVSNAGHLLASAQGDPLGAGGGQGIVRIWDVSKF------DRGYAKDGIGDG-----GGGGKCIVHFEGHRWGVTSMCFSSDDRLLCTVGGDEHRRTQVVVWDVGILFAARAGTVHGAAVRRAVVARQISDFPITRIIFSPFEKLRLVSCGRENVRFWRIRRGHLPACPAVLNDFARDLECTDLAFQRACHGIAG 2739
            MTFHLDVLD  G+P R TFSTLYS     PT  + G                                +K+ NGAA     ++A A   WK G             IG +   +  +   LV+RGGA+R PVSFDTSRSRGW+VV +DMV LM EG G     GG+GY  LRGV+LG+NMVVRGVY SDCVYSP+TLPKEM FR+ GGG +WE  Y W WLPE PDENA P        +  +TRPAWPPGA SPTPSVAAA+A DA  RRRMEKRHF  +PGT+G++LAH+                        GG+G    + +     G        +  GE      P  +    G   A+LS                       SP T         GRC  P          +A+P R RP  A   G      AAT+ PR++  S   R R       PSP                                            + D+ G +VG +    GD                G W R  +ELE W   + AP TP VAV++                     G GAA+R G S  G  G D PVV+RVLPPGLE+ R +PPEF+PDPALRL+RALCYTGG      TV FVG GA F+AFPCNN+I+LMETPVMPE            LG    G + G+  EK+               ++P  +PH+FLRGHTDTVT L++S+AGHLLASAQGDPLGA GG GIVR+W+ +        D G A+   G       GGGGKC  HF  HRWGV+SMCFSSDDRLLCTVGGD+HRRTQ                                               RLVSCGRENVRFWR+RR HLPACPAVLNDFARDL CTDLAFQ +C GIAG
Sbjct:    1 MTFHLDVLDAGGRPERVTFSTLYSNRPSTPT--RRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSKNTKHGNGAAFTAVASTATALEAWKSGGVGXXXXXXXXXXIGEAATADAAAGTALVKRGGALRYPVSFDTSRSRGWTVVGIDMVALMLEGGGRAGAAGGRGYGVLRGVKLGSNMVVRGVYASDCVYSPQTLPKEMAFRIPGGGKDWETAYNWLWLPEAPDENAAPP----ADGTRPTTRPAWPPGADSPTPSVAAADAADARVRRRMEKRHFFAEPGTVGRLLAHENXXXXXXXXXXEGAVKTKGRASTPGGRGRSGTLGIRGRPTGKGRRESSGVSVGESSFPRTPRRAGVAAG--VAALSPAALGGGGGRRGQSTPPRPGLLASPRT-----PYSRGRCASPFC-----RLPLASPARMRPVSAAAGGSGGIRGAATSSPRARPTSGVWRARERSSMAAPSPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDYNDDRGFDVGVDACGGGDVXXXXXXXXXXXXXXGGAWNRTSEELEAWRGRETAPATPVVAVLNNGGERLTDGDXXXXXXXXXXXGLGAARRAGPSPSGVVGMDPPVVSRVLPPGLESSRPDPPEFDPDPALRLQRALCYTGGDLSGSTTVTFVGRGAEFMAFPCNNVIVLMETPVMPEAV---------FLGDGPAGMDEGVGAEKEAXXXXXXXRDGLLALQQPAPAPHIFLRGHTDTVTRLQLSHAGHLLASAQGDPLGAAGGHGIVRLWNATSLGRRSPADSGSARAAGGRRTPLREGGGGKCAAHFIAHRWGVSSMCFSSDDRLLCTVGGDDHRRTQ-----------------------------------------------RLVSCGRENVRFWRVRRRHLPACPAVLNDFARDLACTDLAFQSSCSGIAG 878
[Close]
BLAST of mRNA_H-elongata_contig17481.4548.1 vs. uniprot
Match: A0A835YLQ5_9STRA (DUF667 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLQ5_9STRA)

HSP 1 Score: 166 bits (420), Expect = 4.180e-38
Identity = 113/309 (36.57%), Postives = 145/309 (46.93%), Query Frame = 1 
Query: 1903 ALRLERALCYTGGRRGTVAFVGGAAF-VAFPCNNIIILMETPVMPEFSRQGGENGDGS---LGGNIGGKNRGIEEEKDEEPLSSPHLFLRGHTDTVTLLRVSNAGHLLASAQGDPLGAGGGQGIVRIWDVSKFDRGYAKDGIGDGGGGG-KCIVHFEGHRWGVTSMCFSSDDRLLCTVGGDEHRRTQVVVWDVGILFAARAGTVHGAAVRR----------------------------------AVVARQISDFPITRIIFSPFEKLRLVSCGRENVRFWRIRRGHLPACPAVLNDFARDLECTDLAF 2712
            A  L R L Y GG    +A+ G AA  +AFP    ++L         S +   +GDGS       +         +      +  H  L GH                          G G+ +VR+W V +     A D    GG  G +C+ H   H  G+ S+ FS+D+R LCTVGGD  RRTQV+VWDV +L AAR     G+  RR                                  A++ARQ+SDFP+ R+ FSPF   +LVSCGRENVRFWR+RR  LPACPAVLN++AR  ECTDLAF
Sbjct:  426 APALTRMLGYAGG---PIAWAGPAATALAFPSGGAVVLAAADAQRGSSAEYRSSGDGSSXXXXXXVDXXXXXXXADAVGAGGAPRHAVLHGHRTA----------------------GGAGEALVRLWRVPQAAT--AGDAARGGGQEGYRCVAHVAAHACGLRSLAFSADERALCTVGGDAQRRTQVIVWDVAVLMAARRA---GSGARRSQLMLPPLTYHVXXXXXXXXXXXXXXXXXXXXDAAILARQLSDFPVARVRFSPFHARQLVSCGRENVRFWRVRRKCLPACPAVLNEYARGAECTDLAF 704
[Close]
BLAST of mRNA_H-elongata_contig17481.4548.1 vs. uniprot
Match: A0A397DVB1_9STRA (DUF667 domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397DVB1_9STRA)

HSP 1 Score: 144 bits (363), Expect = 1.250e-31
Identity = 99/282 (35.11%), Postives = 130/282 (46.10%), Query Frame = 1 
Query: 1894 PDPALRLERALCYTGGRRGTVAFVGGAAFVAFPCNNIIILMETPVMPEFSRQGGENGDGSLGGNIGGKNRGIEEEKDEEPLSSPHL---FLRGHTDTVTLLRVSNAGHLLASAQGDPLGAGGGQGIVRIWDVSKFDRGYAKDGIGDGGGGGKCIVHFEGHRWGVTSMCFSSDDRLLCTVGGDEHRRTQVVVWDVGILFAARAGTVHGAAVRRAVVARQISDFPITRIIFSPFEKLRLVSCGRENVRFWRIRRGHLPACPAVLNDFARDLECTDLAFQRACHG 2730
            P PAL L R + Y+  RR  +A+   ++   + C + +I+   P  P   +                           E  SSP +   FL GHTD VT L  S+A  LLASAQG      G    +R W +S                 G CI   + H  GV ++ F      LC VG D  RRTQ++VWDV         T     V    VA+Q++D+ I  I FSP E  RLVSCGRE++RFWR++ GHLP C  VL+++ARD   TDL F     G
Sbjct:  217 PSPALSLRRVIGYSVERRRALAWASTSSTFFYSCESTVIVGRRP--PPSGQS--------------------------ETTSSPFVDQEFLLGHTDDVTALAYSSAAGLLASAQG------GVSPSIRFWLLSPK---------------GHCIASVKAHAHGVDTIAFCPHGTQLCGVGHDSKRRTQILVWDV---------TTPSQPV---CVAKQLTDYAIANIKFSPHEPDRLVSCGRESIRFWRVKNGHLPGCAVVLHEYARDTLFTDLDFDPVVMG 437
[Close]
BLAST of mRNA_H-elongata_contig17481.4548.1 vs. uniprot
Match: W4GNL5_9STRA (DUF667 domain-containing protein n=11 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GNL5_9STRA)

HSP 1 Score: 143 bits (360), Expect = 6.350e-31
Identity = 98/282 (34.75%), Postives = 128/282 (45.39%), Query Frame = 1 
Query: 1894 PDPALRLERALCYTGGRRGTVAFVGGAAFVAFPCNNIIILMETPVMPEFSRQGGENGDGSLGGNIGGKNRGIEEEKDEEPLSSPHL---FLRGHTDTVTLLRVSNAGHLLASAQGDPLGAGGGQGIVRIWDVSKFDRGYAKDGIGDGGGGGKCIVHFEGHRWGVTSMCFSSDDRLLCTVGGDEHRRTQVVVWDVGILFAARAGTVHGAAVRRAVVARQISDFPITRIIFSPFEKLRLVSCGRENVRFWRIRRGHLPACPAVLNDFARDLECTDLAFQRACHG 2730
            P PAL L R + Y+  RR  +A+   ++   + C + +I+                             R        E  SSP +   FL GHTD VT L  S+A  LLASAQG      G    +R W +S                 G CI   + H  GV ++ F      LC VG D  RRTQ++VWDV         T     V    VA+Q++D+ I  I FSP E  RLVSCGRE++RFWR++ GHLP C  VL+++ARD   TDL F     G
Sbjct:  344 PSPALSLRRVIGYSVERRRALAWASTSSTFFYACESTVIV----------------------------GRXXXPSGQSETTSSPFVDQEFLLGHTDDVTALAYSSAAGLLASAQG------GVSPSIRFWLLSPK---------------GHCIASVKAHAHGVDTIAFCPHGTQLCGVGHDSKRRTQILVWDV---------TTPSQPV---CVAKQLTDYAIANIKFSPHEPDRLVSCGRESIRFWRVKNGHLPGCAVVLHEYARDTLFTDLDFDPVVMG 564
[Close]
BLAST of mRNA_H-elongata_contig17481.4548.1 vs. uniprot
Match: A0A024TNJ4_9STRA (DUF667 domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TNJ4_9STRA)

HSP 1 Score: 141 bits (356), Expect = 1.920e-30
Identity = 92/287 (32.06%), Postives = 127/287 (44.25%), Query Frame = 1 
Query: 1870 RSEPPEFEPDPALRLERALCYTGGRRGTVAFVGGAAFVAFPCNNIIILMETPVMPEFSRQGGENGDGSLGGNIGGKNRGIEEEKDEEPLSSPHLFLRGHTDTVTLLRVSNAGHLLASAQGDPLGAGGGQGIVRIWDVSKFDRGYAKDGIGDGGGGGKCIVHFEGHRWGVTSMCFSSDDRLLCTVGGDEHRRTQVVVWDVGILFAARAGTVHGAAVRRAVVARQISDFPITRIIFSPFEKLRLVSCGRENVRFWRIRRGHLPACPAVLNDFARDLECTDLAFQRACHG 2730
            R+  P   P PAL L R + Y+   R  +A+   ++   +   + +I+      P                                P++    FL GHTD VT L  S    LL SAQG      G    VRIW ++                 G CI   + H  GV ++ FS +   LC VG D  RRTQ++VWDV                +  +VA+Q+ D+ I  + FSP E  RLVSCGRE++RFWR++ GHLP CP +L+++ARD   TDL F     G
Sbjct:  341 RAANPVVWPSPALTLRRVIGYSVLHRRALAWASASSMFFYASESTVIVGRRDGQPSLPSSSSTT----------------------SPVAIAQEFLLGHTDNVTALAYSPTASLLVSAQG------GLSPRVRIWLLTPK---------------GHCIASVKAHAQGVDALSFSRNGTQLCGVGKDYKRRTQILVWDVA------------TPTQPVLVAKQLCDYSIANMKFSPHEHDRLVSCGRESIRFWRVKAGHLPGCPVILHEYARDTWFTDLDFDPVVMG 572
[Close]
BLAST of mRNA_H-elongata_contig17481.4548.1 vs. uniprot
Match: A0A418ARZ7_9STRA (DUF667 domain-containing protein (Fragment) n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418ARZ7_9STRA)

HSP 1 Score: 140 bits (353), Expect = 3.300e-30
Identity = 94/287 (32.75%), Postives = 129/287 (44.95%), Query Frame = 1 
Query: 1870 RSEPPEFEPDPALRLERALCYTGGRRGTVAFVGGAAFVAFPCNNIIILMETPVMPEFSRQGGENGDGSLGGNIGGKNRGIEEEKDEEPLSSPHLFLRGHTDTVTLLRVSNAGHLLASAQGDPLGAGGGQGIVRIWDVSKFDRGYAKDGIGDGGGGGKCIVHFEGHRWGVTSMCFSSDDRLLCTVGGDEHRRTQVVVWDVGILFAARAGTVHGAAVRRAVVARQISDFPITRIIFSPFEKLRLVSCGRENVRFWRIRRGHLPACPAVLNDFARDLECTDLAFQRACHG 2730
            R+  P   P PAL L R + Y+   R  +A+   ++   +   + +I+                 DGS                   P++    FL GHTD VT L  S    LL SAQG      G    VRIW ++                 G CI   + H  GV ++ FS +   LC VG D  RRTQ++VWDV                +  +VA+Q+ D+ I  + FSP E  RLVSCGRE++RFWR++ GHLP CP +L+++ARD   TDL F     G
Sbjct:  227 RAANPVVWPSPALTLRRVIGYSVLHRRALAWASASSMFFYASESTVIVGRR--------------DGST----------------TSPVAIAQEFLLGHTDNVTALAYSPTASLLVSAQG------GLSPRVRIWLLTPK---------------GHCIASVKAHAQGVDALSFSRNGTQLCGVGKDYKRRTQILVWDVA------------TPTQPVLVAKQLCDYSIANMKFSPHEHDRLVSCGRESIRFWRVKAGHLPGCPVILHEYARDTWFTDLDFDPVVMG 450
[Close]
BLAST of mRNA_H-elongata_contig17481.4548.1 vs. uniprot
Match: A0A2P4X056_9STRA (WD40 repeat-like protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X056_9STRA)

HSP 1 Score: 140 bits (354), Expect = 3.450e-30
Identity = 97/293 (33.11%), Postives = 143/293 (48.81%), Query Frame = 1 
Query: 1894 PDPALRLERALCYTGGRRGTVAFVGGAAFVAFPCNNIIILMET------PVMPEFSRQGGENGDGSLGGNIGGKNRGIEEEKDE-----EPLSSPHLFLRGHTDTVTLLRVSNAGHLLASAQGDPLGAGGGQGIVRIWDVSKFDRGYAKDGIGDGGGGGKCIVHFEGHRWGVTSMCFSSDDR---LLCTVGGDEHRRTQVVVWDVGILFAARAGTVHG-AAVRRAVVARQISDFPITRIIFSPF---EKLRLVSCGRENVRFWRIR--RGHLPACPAVLNDFARDLECTDLAF 2712
            PDP L L+R + ++      + +V   +   +  ++ II  E       P MP  SR G E           G NR  +  K         +++   +L GH   +  L V++ G LLASA+   L  G  Q  VR+WD+S  +                C+   +    GV ++CFS+  +   LLC VG DE  RTQ+ VWD   L   +  T+   AA   +++ARQ SDFPI R+ FSP+   ++  LVSCGREN+R+WR+    GHL  CP +LN+++R    TD+ F
Sbjct:  239 PDPILELDRIIGFSNDFPRMLLWVANRSACIYTSSSTIIFREFCDQSNGPNMPNSSRFGAE-----------GNNRSTDAVKSSLESIGSAIATREHYLYGHCAKICALAVTSNGRLLASAE---LPTGSKQNGVRLWDLSSHE----------------CLTVVKAQPKGVHALCFSTPLKRRLLLCVVGRDECFRTQIFVWDCSCLQHDKEDTLSATAAAAVSLLARQTSDFPIDRVAFSPYVQQDQFHLVSCGRENIRYWRVNPNTGHLTGCPVILNEYSRGTVFTDIGF 501
[Close]
BLAST of mRNA_H-elongata_contig17481.4548.1 vs. uniprot
Match: A0A485LFU9_9STRA (Aste57867_20150 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LFU9_9STRA)

HSP 1 Score: 135 bits (339), Expect = 2.040e-28
Identity = 84/273 (30.77%), Postives = 129/273 (47.25%), Query Frame = 1 
Query: 1894 PDPALRLERALCYTGGRRGTVAFVGGAAFVAFPCNNIIILMETPVMPEFSRQGGENGDGSLGGNIGGKNRGIEEEKDEEPLSSPHLFLRGHTDTVTLLRVSNAGHLLASAQGDPLGAGGGQGIVRIWDVSKFDRGYAKDGIGDGGGGGKCIVHFEGHRWGVTSMCFSSDDRLLCTVGGDEHRRTQVVVWDVGILFAARAGTVHGAAVRRAVVARQISDFPITRIIFSPFEKLRLVSCGRENVRFWRIRRGHLPACPAVLNDFARDLECTDLAF 2712
            P P   L+R + ++ G R  V +   A+  AF C + +++                             R  E++     L +  L L GHTD +T +  S A  LLASAQ       G   +VR+W ++                 G C+     H  GV ++ F+   ++L  VG D  +R Q++VWD+       +           +VA+Q+ D  I+++ FSP E  RLVSCGRE++RFWRI+ GHLP+CP VL+++ARD+  TD+ F
Sbjct:  361 PTPVATLDRVVGFSCGHRDAVVWAHNASTFAFACESTVVV----------------------------GRRTEDDHGGHGLHTQELLL-GHTDDITTIAYSPASGLLASAQS------GATPLVRLWALAPK---------------GHCVATINAHAGGVLTLAFNPSGQMLSGVGKDAKQRVQLLVWDISTTSPPASKLPPPT-----LVAKQLCDVAISKLKFSPHEPDRLVSCGRESIRFWRIKAGHLPSCPVVLHEYARDVVFTDVDF 578
[Close]
BLAST of mRNA_H-elongata_contig17481.4548.1 vs. uniprot
Match: G4Z4M8_PHYSP (DUF667 domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4Z4M8_PHYSP)

HSP 1 Score: 134 bits (337), Expect = 2.090e-28
Identity = 92/284 (32.39%), Postives = 143/284 (50.35%), Query Frame = 1 
Query: 1894 PDPALRLERALCYTGGRRGTVAFVGGAAFVAFPCNNIIILME---TPVMPEFSRQGGENGDGSLGGNIGGKNRGIEEEKDEEPLSSPHLFLRGHTDTVTLLRVSNAGHLLASAQGDPLGAGGGQGIVRIWDVSKFDRGYAKDGIGDGGGGGKCIVHFEGHRWGVTSMCFSSDDR---LLCTVGGDEHRRTQVVVWDVGILFAARAGTVHGAAVRRAVVARQISDFPITRIIFSPFEK---LRLVSCGRENVRFWRIR--RGHLPACPAVLNDFARDLECTDLAF 2712
            PDP L L+R + ++      + ++   +   +  ++ II+ E     + P  S         ++ G++         E      ++   FL GH+ ++  L V++ G LLASA+  PL A    G VR+WD++  +                C+   +    GV ++CFSS  +   LLC VG DE  RTQ+ +WD   L   +     GAAV  +++ARQ SDFPI R+ FSP+E+     LVSCGREN+R+WR+    GHL  CP +LN+++R    TD+ F
Sbjct:  236 PDPILELDRVIGFSNDYSRMLLWLPDGSACVYTSSSAIIIREFCDEGMDPRRSATSQRVSTEAVKGSL---------ETTSSATATREHFLYGHSASICALAVASDGGLLASAE-VPLQAKNQNG-VRLWDLASRE----------------CVTVVKAQPKGVHALCFSSASKRRLLLCAVGRDECFRTQIFIWDCSCLRHGKKEAYSGAAV--SLMARQTSDFPIDRVAFSPYEQQDHYHLVSCGRENIRYWRVNPNTGHLTGCPVILNEYSRGTVFTDIGF 490
[Close]
BLAST of mRNA_H-elongata_contig17481.4548.1 vs. uniprot
Match: A0A225W0N6_9STRA (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225W0N6_9STRA)

HSP 1 Score: 134 bits (336), Expect = 4.840e-28
Identity = 98/292 (33.56%), Postives = 139/292 (47.60%), Query Frame = 1 
Query: 1894 PDPALRLERALCYTGGRRGTVAFVGGAAFVAFPCNNIIILME------TPVMPEFSRQGGENGDGSLGGNIGGKNRGIEEEKDEEPLSSPHL-----FLRGHTDTVTLLRVSNAGHLLASAQGDPLGAGGGQGIVRIWDVSKFDRGYAKDGIGDGGGGGKCIVHFEGHRWGVTSMCFSSDDR---LLCTVGGDEHRRTQVVVWDVGILFAARAGTVHGAAVRRAVVARQISDFPITRIIFSPF---EKLRLVSCGRENVRFWRIR--RGHLPACPAVLNDFARDLECTDLAF 2712
            PDP L L R + ++      + +V   +   +  ++ II  E       PV    SR  G+           G N   E  K     +S H+     FL GH   ++ L V++ G LLASA+   L     Q  VR+WD+S  +                CI   +    GV ++CFS+  +   LLC VG DE  RTQ+ VWD   L       + G A+  +++ARQ SDFPI RI FSP+   ++  LVSCGREN+R+WRI     HL  CP +LN+++R    TD+ F
Sbjct: 1168 PDPILELGRVIGFSNDFPRMLVWVPNGSACIYTSSSTIIFREFCDVNNDPVRLNASRTNGK-----------GINLSTEAVKGSVESTSSHISTQEHFLYGHCSAISALAVTSDGGLLASAE---LPTQTTQNGVRLWDLSSRE----------------CITVIKAQPKGVHALCFSAPLKRRILLCVVGRDECFRTQIFVWDCSSLRHDNEEALSGTAI--SLMARQTSDFPIDRIAFSPYVEQDQFHLVSCGRENIRYWRINPNTSHLTGCPVILNEYSRGTVFTDIGF 1427
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17481.4548.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JNU2_9PHAE8.730e-16641.70Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YLQ5_9STRA4.180e-3836.57DUF667 domain-containing protein n=1 Tax=Tribonema... [more]
A0A397DVB1_9STRA1.250e-3135.11DUF667 domain-containing protein (Fragment) n=1 Ta... [more]
W4GNL5_9STRA6.350e-3134.75DUF667 domain-containing protein n=11 Tax=Aphanomy... [more]
A0A024TNJ4_9STRA1.920e-3032.06DUF667 domain-containing protein n=1 Tax=Aphanomyc... [more]
A0A418ARZ7_9STRA3.300e-3032.75DUF667 domain-containing protein (Fragment) n=1 Ta... [more]
A0A2P4X056_9STRA3.450e-3033.11WD40 repeat-like protein n=1 Tax=Phytophthora palm... [more]
A0A485LFU9_9STRA2.040e-2830.77Aste57867_20150 protein n=1 Tax=Aphanomyces stella... [more]
G4Z4M8_PHYSP2.090e-2832.39DUF667 domain-containing protein n=1 Tax=Phytophth... [more]
A0A225W0N6_9STRA4.840e-2833.56Cyclic nucleotide-binding domain-containing protei... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17481contigH-elongata_contig17481:160..7383 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score450.7
Seed ortholog evalue8.8e-124
Seed eggNOG ortholog2880.D8LMS4
Preferred nameWDR90
KEGG koko:K11797,ko:K11798
GOsGO:0001932,GO:0001934,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006325,GO:0006355,GO:0006357,GO:0006606,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0007010,GO:0007088,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007346,GO:0008104,GO:0008150,GO:0008284,GO:0008286,GO:0008360,GO:0009719,GO:0009725,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010033,GO:0010243,GO:0010468,GO:0010556,GO:0010557,GO:0010562,GO:0010564,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010647,GO:0010648,GO:0010799,GO:0010800,GO:0010941,GO:0015031,GO:0015833,GO:0016043,GO:0017038,GO:0019219,GO:0019220,GO:0019221,GO:0019222,GO:0022603,GO:0022604,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032868,GO:0032869,GO:0032870,GO:0033036,GO:0033043,GO:0033135,GO:0033138,GO:0033365,GO:0034097,GO:0034504,GO:0034613,GO:0038111,GO:0040008,GO:0042127,GO:0042221,GO:0042325,GO:0042327,GO:0042393,GO:0042886,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043434,GO:0043567,GO:0043568,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045787,GO:0045840,GO:0045893,GO:0045931,GO:0045935,GO:0045937,GO:0045944,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051169,GO:0051170,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051276,GO:0051641,GO:0051649,GO:0051716,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0060255,GO:0060548,GO:0065007,GO:0065008,GO:0070013,GO:0070577,GO:0070727,GO:0070887,GO:0071310,GO:0071345,GO:0071375,GO:0071417,GO:0071495,GO:0071702,GO:0071705,GO:0071840,GO:0072594,GO:0080090,GO:0090068,GO:0098760,GO:0098761,GO:0140030,GO:0140033,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141,GO:2001233,GO:2001234,GO:2001236,GO:2001237
EggNOG free text desc.regulation of cell shape
EggNOG OGsCOG2319@1,KOG0644@2759,KOG3213@1,KOG3213@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Hectar predicted targeting categoryother localisation
Exons9
Model size2739
Cds size1446
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17481.4548.1prot_H-elongata_contig17481.4548.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17481 4260..7383 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930013.6973333-UTR-H-elongata_contig17481:159..3061622930013.6973333-UTR-H-elongata_contig17481:159..306Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17481 160..306 +
1691679246.2969022-UTR-H-elongata_contig17481:159..3061691679246.2969022-UTR-H-elongata_contig17481:159..306Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17481 160..306 +
1622930013.7124467-UTR-H-elongata_contig17481:764..8901622930013.7124467-UTR-H-elongata_contig17481:764..890Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17481 765..890 +
1691679246.3070357-UTR-H-elongata_contig17481:764..8901691679246.3070357-UTR-H-elongata_contig17481:764..890Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17481 765..890 +
1622930014.1782887-UTR-H-elongata_contig17481:2289..28951622930014.1782887-UTR-H-elongata_contig17481:2289..2895Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17481 2290..2895 +
1691679246.314592-UTR-H-elongata_contig17481:2289..28951691679246.314592-UTR-H-elongata_contig17481:2289..2895Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17481 2290..2895 +
1622930014.194746-UTR-H-elongata_contig17481:3289..35851622930014.194746-UTR-H-elongata_contig17481:3289..3585Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17481 3290..3585 +
1691679246.3227098-UTR-H-elongata_contig17481:3289..35851691679246.3227098-UTR-H-elongata_contig17481:3289..3585Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17481 3290..3585 +
1622930014.2082603-UTR-H-elongata_contig17481:4141..42591622930014.2082603-UTR-H-elongata_contig17481:4141..4259Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17481 4142..4259 +
1691679246.330785-UTR-H-elongata_contig17481:4141..42591691679246.330785-UTR-H-elongata_contig17481:4141..4259Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17481 4142..4259 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930014.2184672-CDS-H-elongata_contig17481:4259..48291622930014.2184672-CDS-H-elongata_contig17481:4259..4829Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17481 4260..4829 +
1691679246.3440635-CDS-H-elongata_contig17481:4259..48291691679246.3440635-CDS-H-elongata_contig17481:4259..4829Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17481 4260..4829 +
1622930014.2285957-CDS-H-elongata_contig17481:5201..55861622930014.2285957-CDS-H-elongata_contig17481:5201..5586Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17481 5202..5586 +
1691679246.3561692-CDS-H-elongata_contig17481:5201..55861691679246.3561692-CDS-H-elongata_contig17481:5201..5586Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17481 5202..5586 +
1622930014.2400641-CDS-H-elongata_contig17481:5973..61731622930014.2400641-CDS-H-elongata_contig17481:5973..6173Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17481 5974..6173 +
1691679246.3645463-CDS-H-elongata_contig17481:5973..61731691679246.3645463-CDS-H-elongata_contig17481:5973..6173Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17481 5974..6173 +
1622930014.2497149-CDS-H-elongata_contig17481:6587..67281622930014.2497149-CDS-H-elongata_contig17481:6587..6728Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17481 6588..6728 +
1691679246.3754997-CDS-H-elongata_contig17481:6587..67281691679246.3754997-CDS-H-elongata_contig17481:6587..6728Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17481 6588..6728 +
1622930014.2592847-CDS-H-elongata_contig17481:7233..73831622930014.2592847-CDS-H-elongata_contig17481:7233..7383Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17481 7234..7383 +
1691679246.3925965-CDS-H-elongata_contig17481:7233..73831691679246.3925965-CDS-H-elongata_contig17481:7233..7383Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17481 7234..7383 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17481.4548.1

>prot_H-elongata_contig17481.4548.1 ID=prot_H-elongata_contig17481.4548.1|Name=mRNA_H-elongata_contig17481.4548.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=482bp
MSPATGSRSKSVGAGRCPHPSTPPHTTANVIATPTRTRPARALGAGHSAA
ATAATTPRSKTPSRFLRHRGHPPPSPVATKGKPPLSPTTCRRARDTPPSR
FRKKAFFCDEDGDNVGNGNRNGDANADDSDERSGNWTRQELEEWAAGDPA
PPTPSVAVVDGSGAAKRPGKSARGGPDAPVVTRVLPPGLETCRSEPPEFE
PDPALRLERALCYTGGRRGTVAFVGGAAFVAFPCNNIIILMETPVMPEFS
RQGGENGDGSLGGNIGGKNRGIEEEKDEEPLSSPHLFLRGHTDTVTLLRV
SNAGHLLASAQGDPLGAGGGQGIVRIWDVSKFDRGYAKDGIGDGGGGGKC
IVHFEGHRWGVTSMCFSSDDRLLCTVGGDEHRRTQVVVWDVGILFAARAG
TVHGAAVRRAVVARQISDFPITRIIFSPFEKLRLVSCGRENVRFWRIRRG
HLPACPAVLNDFARDLECTDLAFQRACHGIAG
back to top

mRNA from alignment at H-elongata_contig17481:160..7383+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17481.4548.1 ID=mRNA_H-elongata_contig17481.4548.1|Name=mRNA_H-elongata_contig17481.4548.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=7224bp|location=Sequence derived from alignment at H-elongata_contig17481:160..7383+ (Himanthalia elongata Himel1 dioecious)
ATGGCTCTCCTCGAGCTATCGGAAGCAGAGTGGCAGCGCTCTTTTGTGCC
TGTCCTCAGAATCGCGGGTTCCGCCATCAGCACCCCTGGAGGAGACACTG
ACCCAAGAGCAAGGGAACACGCCGTGGGAGACGTGAAGCACGTAATGGTG
AGAGTGGGTGACGGGGCAATCTGTCACTCTACTTGGCATGTATAAATCCC
CCTCAGGTGCTGTCTCTTCTTGGGTGTTTCTCTGTGTCTGAGTGGGGGTG
TTTTTATTGTCTGTGTTTGCAAAGGGCGGGCGGTAAATCTCTTAAGTCAA
GTAGATTTCACATCTCGGCCTTGAAGCTTTTACGCATGTAAATCATAGGG
GATGGCGCGGCCCGTCTCACGAATGATAAGCAAACCAGCCTAGAGTCTTG
CTGCGTCGCCTGCTGATGGAAATACTTTTGAGTGACGGATGGATCCCTCA
GCTCTCTCTATTTTGTTGCCAAGACACATTGCTTGTAATTTTTTTTATCG
TACTAGACGGATATCGACCCGTCCGCTAGCATCGCGCCACTGTACTTCCC
ATCGGCTGATTTGCCGACGCCGCTACTGTGCACCCCTGCCTCCAAACGAA
ACCAGGACAAGACGATAGGGAGGCGATGTTGTCGCATTTCCGGGGCAGTG
TCTGCGGCCAATTATCTCGAGGTGCCCAGGGAGGCTAGGACGACACCCCT
CAATCTCACGGGGCGGTTCGTTTACATCCAGGTGTGTGTGAGACAGGGCT
GGCGGCAAAGTCCCGTTTACACTTTTGTTCGGGAGTTTTTTCGTACACAA
CCACCCTGTTTTTCTGAATTAAGAGCAAACGGTTCAGGTTCAAAGATACT
CCTTGGCAGTTGGGTACTTGTGCTCGTGCCATCCATCTATAAACTATTAG
GTGTATCCTACAGCTCCTGTGTGCAGCGATAGTAACTTTGCTTTTTGTTG
CACCCCTGAGATTATATAGTAGTGAAGCGCATGGACTCGCACTTTATATT
CGTTGGACCACTCCTTAGTCCAAACAGTCTCAGTTTATCGATCCCATCGA
TCTTGGGGTCCTTGAGCCTTTACTCTTGGAGATCCGCTGACACTTTCATT
ACCCGCGCGCCCCACCCCTTATGCGATGTGGTCCCTCTTCGTATACGATA
TCGCCGCGGACGGCCCCCTGATAGATCCGACAATCAAACTAGTGTATCTG
CATACCGTTAGATTCGGCTTCCTCGATCAGAGTGCGATGACACTCTTTAC
TCTAAGAATGTCTTAGTATTTTTGTTGTTGTACCCTCTGTTTCATAGACA
TACATAGCACACCAGATCCTGACCATTGCCGTTGGGTATCTAGGTAGAAG
AGCGCGTGTCTTAGCAATTATCTTCAGCGCGCGAAGTCGGTCTATACGCA
GTGGCCATGCGGGTAGCTCGCAAGGATATTGGTCCACCCGGCCCTGCTCA
ACGCCCCTAGCGCAGGGTTGCGAAATAGCACTTATGGACGGACAGGTCAT
ACTGATGCAGACCGTCTCACCCGCCTCCCCCAGGCAGGGCTCGATGTTCA
GCGGCTGGGGTTGTCAGGCGGAAGGGTTTGCGGGGAGTGGACAAAGAGGA
GATAGAGGCGTTAAACAAATGGCTGTTCGGCTGTGCGTATTTGCCGCCGG
GCTCGGTGCGCATGCCTTGCTCTTAGCTATTTGCTGCGGCGCGGTAAACT
CCTCTCCTCTCGTGGTCTAACGCCACCCTCCCGGAGGCCTGTGGTCTTTT
TCAGGAAGATTATAATAGTTATGTTATGTTATGATATGATATGATATGTC
GGATGTTGACCGCGAACCACCATGAAGACCCTCCGCTTCAGGCACCGGTG
GCGGCAGGCTAACGAAAAACTTGCCCTCCACTTAACCCGCCTCACTTCGA
ATCTTCACCTAGAGCGAGTAGATACTATCTTATGATCGCAGACGCCCTCC
TGGCGGTAAAACCTCCCAATTGAGTTGCAGCGTTAGCATCGGCTTTAAGC
TCGAAGAATGCATTTCTTGCACTTCGCATTGAGTCATTATTATCCTTATA
TTATCATATTTTAATTGTGCTGCAACTTCATCCTTGCGCTTTCCGCCCGT
CTCCTGGTCGCGCCCCGTCGCGCGCAAAAGGCGCGGCCCATCGGCAACAA
GGCCATGACGTTTCATCTTGACGTCCTCGACGGCGCTGGCCAGCCGGCGC
GCGCGACGTTCAGTACTCTCTATTCGGAACCTTCTTTCATGCCGACCATC
CCGAAGACCGGTAGACCTTCGGTCACGGCGGAACTGTCTGTCCCGGCGGT
TGGCAGGGCCGGTCGCGGTACGACCCTCGGCGGAAGCAAAAACGCCAATG
GGGCAGCGACGGGGGCGAGCGCCGCTGCTGGGGTACGGTGGAAAGGCGGA
ATAGGGAGCAGCAGGTGCCCCGAAGACGTGTCTCTAGCGGTGCTCGTGCG
ACGGGGCGGGGCCGTGAGATCTCCCGTCTCCTTCGACACTTCGCGCTCCC
GTGGTTGGTCGGTCGTCGCTGTAGACATGGTAAACCTCATGCGCGAGGGG
CGCGGCGGGGGCGGCAAGGGATACAAGGCGCTGAGGGGAGTGAGACTAGG
GGCGAATATGGTGGTGCGTGGAGTTTACGTGTCCGATTGTGTCTACTCGC
CGCGGACGCTGCCGAAGGAGATGACGTTCCGAGTCTCCGGTGGTGGAGAA
TGGGAAGAGACGTATGGCTGGCAGTGGCTTCCGGAGGTAGGTTTCTTGGA
GAAAGTAAAGCGTGCAAGTCTTAGCTTTCCTCCTTCCGCCACAGGTTTGA
AGATTTGAGAAGGAGAGACCTAGTACTAGATAAGGTCGGTGACTACCCTG
GCGGGCGAGCAGCTAGACACAATGATTGTACGGCAGCTTGAGGAGCGCAC
CGGGTTTGTCACGAGTTGCCAAGATCAAGCAGTCGGCAAGCGCAAATTAT
GCGATAAACACGCCCGCTCTCATCCTCTTAGGGTACCTACTTAGCACGAT
GATGTTAATGTGATGTTTTCCAGCTGAGTAAGGTCGCAAAACTGTAGGGC
ATACATTGATAGATCCCGCTACGTTACTTCATTTCCTGTCTCGCCCACAA
TGTTTTTCTACATACGGGGAAATCGAACAGATACCAGATGAGAATGCCGT
GCCACCGCCGCCGCCGCCGCTGCAAGAGAGCGCGCGTTCGACCCGCCCGG
CGTGGCCCCCTGGCGCCAGCTCTCCGACACCATCGGTTGCCGCGGCCAAC
GCAATCGACGCCCACGGACGTCGCAGGATGGAGAAGCGCCACTTCCGAAC
GCAGCCGGGTACACTCGGAAAGATCCTGGCGCACGACGAGGATGGAGGCC
AAGGAAATGAGGTGTGCATTAGACTGTTTAGCGGTTCGAATGGGTTGATT
GTCGCGGGAGAGAAAGGGGTTTCGTGGTGATCTTCACGCGAGAACTACTC
GAGCCCCGCATGGAACGCGAAACCCGCACGATTCAGTGATCTTTGCGCGT
TCTCATCGATCGCACGATGGCACAGCACGCAGCGCGTGTTTTAGAGTTGA
TGTTGCTTGGAAATATCGCACAGCTTCACGCGAGTGTCTTGTACTTTTTG
GAATGTGGTATGTTTGTTTCGTTTTTTTTCCGGTAAACTGATCAGGCTTC
GGCTGTTTTCAAAAGGAACGATCACCCACCATAGAAGCCATCTTCTCGTC
TCTCACAAGGCGGGACACTGGTGAATGTTTGGGCGAATGATTACGATAGG
GTTTGCCAAGGGAGATGGCGGGGGGGGCGGGGGGCGCGTTAGGTTTTATA
TTGACTCTGCTTACTTTCGCTGCCTAGCTCGAATCGAGCCCATAAGTAAT
AATGTAAGGCTTTTTGTCCGGTGACGAAAGCGCACGCGCTGGGACTCATG
CATGAGTTACTCACCCGGAAAACGCGCCCCCTTGCCGCCGCCATTTCTCG
CTCCTTGCGTTCCAACCGTGACAGTTGAAGAGACTTCCCGCTGTTTCTCC
CTCACCCGGTGGTGGGAGCCCCGCTTCCCTCTCTTGGAGAAAAAAGGCTT
CTTTCTCTTGGAGAAATAACGCCTCTATCTCTCAGAGGAATAATGCCCCT
ATGTCTCCAGCAACGGGATCCAGGAGCAAGAGTGTCGGCGCGGGGAGATG
TCCGCACCCCTCGACTCCACCGCACACCACCGCTAACGTGATAGCCACCC
CGACGCGAACGCGACCGGCTCGTGCCTTGGGAGCAGGCCACTCAGCCGCC
GCCACGGCAGCTACGACCCCACGGAGCAAAACGCCTTCCAGATTTTTGAG
ACACCGGGGGCACCCCCCGCCCTCCCCCGTTGCCACGAAAGGTAAACCAC
CGCTGTCCCCGACGACGTGCCGACGGGCGAGAGACACACCGCCGTCGAGG
TTTCGGAAGAAGGCGTTTTTTTGTGACGAAGACGGTGACAATGTTGGTAA
TGGTAACCGTAACGGTGATGCCAACGCCGATGACAGCGACGAACGGAGCG
GAAACTGGACGCGCCAGGAACTCGAAGAATGGGCTGCTGGGGATCCCGCG
CCTCCTACACCCTCGGTGGCTGTAGTCGACGGCTCGGGCGCGGCAAAGCG
ACCAGGAAAAAGCGCCAGAGGTGGCCCGGATGCCCCTGTCGTGACGCGTG
TGCTTCCGCCGGGCCTCGAGGTGCTCTCATAGACAAGAAAACGCTAAAAT
TTTCGATGCTCCAACGGATTCCACTTTCTCAGCGTTGTCAGAAGAGTTGA
CCGAAATATGACCAAACAGTGGTAAGGTGCAGTTTTCCTTTTAAGTATCG
ATCGAGGGCTCTCGTAGTCCCTTTACTCCTCGGAAAAACTGACAATGATT
ATGTATCTTGTTCGATTCGAAGCTTCTCCCTCGCTCAGATAGAGGGTTGG
GTTCCGATCTACCGGTAGTAATCTCAGTCTTGAAAAGGCGATGGAAAGCC
CGAACATATCTGCTTCTCGTTGTCGAACCCCTGACATCAGTCACGTGTGC
TCAACCGCCGTTGTACGTGCCGCGTTTTTGTCTCTTGCCTAGACTTGCCG
CTCAGAACCACCGGAGTTTGAACCAGATCCCGCGCTTCGCCTGGAGCGAG
CCCTGTGCTACACGGGGGGGCGTCGAGGGACTGTGGCGTTTGTAGGAGGG
GCTGCGTTCGTGGCGTTCCCCTGCAACAATATAATTATTCTGATGGAAAC
CCCAGTGATGCCGGAGTTTTCCCGGCAGGGCGGGGAGAATGGAGACGGAA
GCCTAGGGGGCAACATCGGCGGGAAAAATCGTGGGATAGAGGAGGAAAAG
GACGAGGAGCCGCTGTCGTCGCCGCATCTGTTTTTGAGGGGGCACACGGA
CACAGTCACTCTCTTGCGCGTCAGCAACGCGGGGCATCTGCTGGCGTCGG
CCCAGGGGGATCCGCTCGGTGCAGGCGGTAAGAAAGGAAGAGGCCTATCG
GCGGGGCCAGAGAGTAAAATATACTATACATACATTAAGGTAAAAGCGTG
GTTGTCTTAGCTCTGGCTGGTGCACGCGGGTCGCAATGGTGCGACATATT
CTTCCGCGTGAGACTTTATATTGAAACCAAGCTCGGGATTGCACGCGGAA
GGGTGAAAGTATATACCATCCCCCCGTTCGTCAAAGAGATGGATGCCGCA
GATCGCTGCGTGGTGGAGTGGTCGCCTGCGGCATTTGTGAGGACCGCCGC
GAGCAGCGGCCCACGATCATCAACTTTTCGACTGCACGCTGCGGCATACT
GTAGTTGGGGTACTGCCTATCGGCGACTTATTTGTTTTTGTTGTTTTCCT
CCAACCGCTACCAGGAGGCCAAGGCATCGTTCGCATTTGGGACGTGTCAA
AATTCGATCGGGGATACGCAAAAGATGGGATCGGCGACGGGGGCGGAGGT
GGAAAATGTATCGTGCACTTCGAGGGGCACCGGTGGGGCGTGACCTCGAT
GTGCTTCAGCTCGGACGACAGGCTGTTGTGCACGGTCGGTGGAGACGAAC
ACAGAAGAACACAGGTAAGATCCTGCCGTTAGGAATATCAACACGCATAT
GCACATACACACGGCATGGGAAGACTTAATTCGTAAGATTAAGTGAGTGA
GTTGATGCGCATGACATGGTAGGTTCGAAGGCTTCGGTCGCCTGATCCGA
AACAAGTTTTCCGGCCGGTAGCAATGGCAGCTCCCGATGCAATTGCGACG
CCTGGGCTCGTCTCAATCGAGAGACGGGCATTCGGATCATCACTGCAGAG
CAAGACAGGGTCGCTTTGATCGGTCCTCCATTCCCGCGCAAAAGTTTTGA
CGATTTTGGTTGTAAACGCTGCCGGTGGCCACCGTGTGATCAGATGCGTG
TCGCCTACGAAGGACTCGCCACGGCCCGCTCAGCTTTGATGTTGGCATCG
ATCCCCTCCCCAAACCCTGTCTTGCTAGGTGGTCGTGTGGGACGTTGGTA
TCCTTTTTGCGGCGAGGGCCGGGACGGTGCATGGAGCCGCCGTGAGGCGG
GCGGTCGTTGCGCGCCAGATCAGTGACTTCCCCATCACGCGCATCATCTT
CAGCCCTTTCGAAAAGCTCGTGAGTTTTGTGTGTGTGTGTGTGTGTACAT
TATGGACGGCCTTTTCGCCTCGAGGTATCGCGCACTCCCAGAGGCAAGGG
CTGGGAGGTAAAGTAGTGAGGGGTGGCTCATCTTCTACAACCGTGACGGG
TGGTCGCTAGGGGATACCCGCGGCGCCGTTTGGACTACCTACCGCCCATG
GGGCACGTAACGCGGCGCCTTTAAAATGTCGGAACGAAAGACAAAAAGAG
ATTGGAAGATCGCGAAGATTCTGTTTTGCCTCGCCGGAGAAGGGATAGGG
GGGTAACCAGCGGCGTTTACTCCCAGGGGGTCGAGGGAGTACAGTGCGCA
TACAAAAAAAATGGCTCTCTAGCGGTAAACGTGCACGGTGGATAAGTAGA
CTCGACACACGCTTCGGTAGTGTACATTTGCTTGTGATGGATGAATTTTG
CTGATGTAGTTGGGTGCGCGGCTTTGTCCGACGCCATCTTTTGCTCTCCC
CCCCCCCCACCTGCCATCCTCCAGCGCCTCGTATCGTGCGGCAGAGAGAA
CGTTCGTTTCTGGCGCATCCGGCGAGGGCATTTGCCGGCCTGCCCTGCGG
TGCTAAACGACTTCGCGCGTGACTTGGAGTGCACGGATCTGGCCTTCCAG
CGCGCTTGCCACGGAATCGCGGGG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig17481:160..7383+

>mRNA_H-elongata_contig17481.4548.1 ID=mRNA_H-elongata_contig17481.4548.1|Name=mRNA_H-elongata_contig17481.4548.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2892bp|location=Sequence derived from alignment at H-elongata_contig17481:160..7383+ (Himanthalia elongata Himel1 dioecious)
ATGTCTCCAGCAACGGGATCCAGGAGCAAGAGTGTCGGCGCGGGGAGATG
TCCGCACCCCTCGACTCCACCGCACACCACCGCTAACGTGATAGCCACCC
CGACGCGAACGCGACCGGCTCGTGCCTTGGGAGCAGGCCACTCAGCCGCC
GCCACGGCAGCTACGACCCCACGGAGCAAAACGCCTTCCAGATTTTTGAG
ACACCGGGGGCACCCCCCGCCCTCCCCCGTTGCCACGAAAGGTAAACCAC
CGCTGTCCCCGACGACGTGCCGACGGGCGAGAGACACACCGCCGTCGAGG
TTTCGGAAGAAGGCGTTTTTTTGTGACGAAGACGGTGACAATGTTGGTAA
TGGTAACCGTAACGGTGATGCCAACGCCGATGACAGCGACGAACGGAGCG
GAAACTGGACGCGCCAGGAACTCGAAGAATGGGCTGCTGGGGATCCCGCG
CCTCCTACACCCTCGGTGGCTGTAGTCGACGGCTCGGGCGCGGCAAAGCG
ACCAGGAAAAAGCGCCAGAGGTGGCCCGGATGCCCCTGTCGTGACGCGTG
TGCTTCCGCCGGGCCTCGAGATGTCTCCAGCAACGGGATCCAGGAGCAAG
AGTGTCGGCGCGGGGAGATGTCCGCACCCCTCGACTCCACCGCACACCAC
CGCTAACGTGATAGCCACCCCGACGCGAACGCGACCGGCTCGTGCCTTGG
GAGCAGGCCACTCAGCCGCCGCCACGGCAGCTACGACCCCACGGAGCAAA
ACGCCTTCCAGATTTTTGAGACACCGGGGGCACCCCCCGCCCTCCCCCGT
TGCCACGAAAGGTAAACCACCGCTGTCCCCGACGACGTGCCGACGGGCGA
GAGACACACCGCCGTCGAGGTTTCGGAAGAAGGCGTTTTTTTGTGACGAA
GACGGTGACAATGTTGGTAATGGTAACCGTAACGGTGATGCCAACGCCGA
TGACAGCGACGAACGGAGCGGAAACTGGACGCGCCAGGAACTCGAAGAAT
GGGCTGCTGGGGATCCCGCGCCTCCTACACCCTCGGTGGCTGTAGTCGAC
GGCTCGGGCGCGGCAAAGCGACCAGGAAAAAGCGCCAGAGGTGGCCCGGA
TGCCCCTGTCGTGACGCGTGTGCTTCCGCCGGGCCTCGAGACTTGCCGCT
CAGAACCACCGGAGTTTGAACCAGATCCCGCGCTTCGCCTGGAGCGAGCC
CTGTGCTACACGGGGGGGCGTCGAGGGACTGTGGCGTTTGTAGGAGGGGC
TGCGTTCGTGGCGTTCCCCTGCAACAATATAATTATTCTGATGGAAACCC
CAGTGATGCCGGAGTTTTCCCGGCAGGGCGGGGAGAATGGAGACGGAAGC
CTAGGGGGCAACATCGGCGGGAAAAATCGTGGGATAGAGGAGGAAAAGGA
CGAGGAGCCGCTGTCGTCGCCGCATCTGTTTTTGAGGGGGCACACGGACA
CAGTCACTCTCTTGCGCGTCAGCAACGCGGGGCATCTGCTGGCGTCGGCC
CAGGGGGATCCGCTCGGTGCAGGCGACTTGCCGCTCAGAACCACCGGAGT
TTGAACCAGATCCCGCGCTTCGCCTGGAGCGAGCCCTGTGCTACACGGGG
GGGCGTCGAGGGACTGTGGCGTTTGTAGGAGGGGCTGCGTTCGTGGCGTT
CCCCTGCAACAATATAATTATTCTGATGGAAACCCCAGTGATGCCGGAGT
TTTCCCGGCAGGGCGGGGAGAATGGAGACGGAAGCCTAGGGGGCAACATC
GGCGGGAAAAATCGTGGGATAGAGGAGGAAAAGGACGAGGAGCCGCTGTC
GTCGCCGCATCTGTTTTTGAGGGGGCACACGGACACAGTCACTCTCTTGC
GCGTCAGCAACGCGGGGCATCTGCTGGCGTCGGCCCAGGGGGATCCGCTC
GGTGCAGGCGGAGGCCAAGGCATCGTTCGCATTTGGGACGTGTCAAAATT
CGATCGGGGATACGCAAAAGATGGGATCGGCGACGGGGGCGGAGGTGGAA
AATGTATCGTGCACTTCGAGGGGCACCGGTGGGGCGTGACCTCGATGTGC
TTCAGCTCGGACGACAGGCTGTTGTGCACGGTCGGTGGAGACGAACACAG
AAGAACACAGGAGGCCAAGGCATCGTTCGCATTTGGGACGTGTCAAAATT
CGATCGGGGATACGCAAAAGATGGGATCGGCGACGGGGGCGGAGGTGGAA
AATGTATCGTGCACTTCGAGGGGCACCGGTGGGGCGTGACCTCGATGTGC
TTCAGCTCGGACGACAGGCTGTTGTGCACGGTCGGTGGAGACGAACACAG
AAGAACACAGGTGGTCGTGTGGGACGTTGGTATCCTTTTTGCGGCGAGGG
CCGGGACGGTGCATGGAGCCGCCGTGAGGCGGGCGGTCGTTGCGCGCCAG
ATCAGTGACTTCCCCATCACGCGCATCATCTTCAGCCCTTTCGAAAAGCT
CGTGGTCGTGTGGGACGTTGGTATCCTTTTTGCGGCGAGGGCCGGGACGG
TGCATGGAGCCGCCGTGAGGCGGGCGGTCGTTGCGCGCCAGATCAGTGAC
TTCCCCATCACGCGCATCATCTTCAGCCCTTTCGAAAAGCTCCGCCTCGT
ATCGTGCGGCAGAGAGAACGTTCGTTTCTGGCGCATCCGGCGAGGGCATT
TGCCGGCCTGCCCTGCGGTGCTAAACGACTTCGCGCGTGACTTGGAGTGC
ACGGATCTGGCCTTCCAGCGCGCTTGCCACGGAATCGCGGGGCGCCTCGT
ATCGTGCGGCAGAGAGAACGTTCGTTTCTGGCGCATCCGGCGAGGGCATT
TGCCGGCCTGCCCTGCGGTGCTAAACGACTTCGCGCGTGACTTGGAGTGC
ACGGATCTGGCCTTCCAGCGCGCTTGCCACGGAATCGCGGGG
back to top