mRNA_H-elongata_contig174643.4543.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig174643.4543.1 vs. uniprot
Match: A0A6H5KCV1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCV1_9PHAE) HSP 1 Score: 153 bits (387), Expect = 1.120e-40 Identity = 97/233 (41.63%), Postives = 142/233 (60.94%), Query Frame = 1
Query: 4 GYRVYFSGDCSEVKGKKGQHWVGLAIKKELVNNTGKDDIAIESISARLLKARLSI-KSILITFLVVYAPTEEVT------ERQKAKYITAPNSIVLSVPAREY-VFLNDANATTGKRSQGGKEAESTVLGAYGRDVDNENGKRMLSFVENNKLTLLNTFYCLPPPRPNGLFYKFQSANRGKGKAGLEYILTEQTDRRLVRIVNFRPPPLASSESDHNLVYAKVRIPRTSAPNR 678
GY + +SG + K K+G H VG+AIK+ + + G++ +E IS RL+K RL I ++ +TF+V YAPTE V + K + TA ++ + V +R++ V L DANA TG+R G +A+ ++GAYGRD+ N NG+R+L +N+L+L NT+ P G+ FQS+N+GK K L++IL QTDRR VR V+ + +SDHNLV VR+P APNR
Sbjct: 64 GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDDNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGCCDAK--IMGAYGRDIMNNNGERLLGLASDNQLSLTNTYSRTPK---GGVQQTFQSSNKGKEKYCLDFILMRQTDRRFVRNVSVKRVDF--KDSDHNLVLTTVRLPPRVAPNR 289
BLAST of mRNA_H-elongata_contig174643.4543.1 vs. uniprot
Match: A0A6H5KBZ6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBZ6_9PHAE) HSP 1 Score: 151 bits (381), Expect = 1.150e-40 Identity = 96/233 (41.20%), Postives = 140/233 (60.09%), Query Frame = 1
Query: 4 GYRVYFSGDCSEVKGKKGQHWVGLAIKKELVNNTGKDDIAIESISARLLKARLSI-KSILITFLVVYAPTEEVTE------RQKAKYITAPNSIVLSVPAREY-VFLNDANATTGKRSQGGKEAESTVLGAYGRDVDNENGKRMLSFVENNKLTLLNTFYCLPPPRPNGLFYKFQSANRGKGKAGLEYILTEQTDRRLVRIVNFRPPPLASSESDHNLVYAKVRIPRTSAPNR 678
GY + +SG + K K+G H VG+AIK+ + + G++ +E IS RL+K RL I ++ +TF+V YAPTE V K + TA ++ + V +R++ V L DANA TG+R G +A+ VLGAYGRD+ N NG+R+ +N+ +L NT++ P G+ + FQS+N+GK K L++IL Q DRR VR V+ + +SDHNLV VR+P APNR
Sbjct: 32 GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRGGCCDAK--VLGAYGRDIMNNNGERLFGLASDNQFSLANTYFRTPK---GGVQHTFQSSNKGKEKYRLDFILMRQADRRFVRNVSVKRVDF--KDSDHNLVLTTVRLPPRVAPNR 257
BLAST of mRNA_H-elongata_contig174643.4543.1 vs. uniprot
Match: A0A6H5KSV0_9PHAE (Endo/exonuclease/phosphatase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSV0_9PHAE) HSP 1 Score: 152 bits (385), Expect = 3.830e-40 Identity = 96/233 (41.20%), Postives = 141/233 (60.52%), Query Frame = 1
Query: 4 GYRVYFSGDCSEVKGKKGQHWVGLAIKKELVNNTGKDDIAIESISARLLKARLSI-KSILITFLVVYAPTEEVTE------RQKAKYITAPNSIVLSVPAREY-VFLNDANATTGKRSQGGKEAESTVLGAYGRDVDNENGKRMLSFVENNKLTLLNTFYCLPPPRPNGLFYKFQSANRGKGKAGLEYILTEQTDRRLVRIVNFRPPPLASSESDHNLVYAKVRIPRTSAPNR 678
GY + +SG + K K+G H VG+AIK+ + + G++ +E IS RL+K RL I ++ +TF++ YAPTE V K + TA ++ + V +R++ V L DANA TG+R G +A+ ++GAYGRD+ N NG+R+L +N+L+L NT++ P G + FQS+N GK K L++IL QTDRR VR V+ + +SDHNLV VR+P APNR
Sbjct: 32 GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVMGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGCCDAK--IMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPK---GGAQHTFQSSNTGKEKYRLDFILMRQTDRRFVRDVSVKRVDF--KDSDHNLVLTTVRLPPRVAPNR 257
BLAST of mRNA_H-elongata_contig174643.4543.1 vs. uniprot
Match: A0A6H5K259_9PHAE (Endo/exonuclease/phosphatase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K259_9PHAE) HSP 1 Score: 150 bits (378), Expect = 4.450e-40 Identity = 95/233 (40.77%), Postives = 139/233 (59.66%), Query Frame = 1
Query: 4 GYRVYFSGDCSEVKGKKGQHWVGLAIKKELVNNTGKDDIAIESISARLLKARLSI-KSILITFLVVYAPTEEVTE------RQKAKYITAPNSIVLSVPAREY-VFLNDANATTGKRSQGGKEAESTVLGAYGRDVDNENGKRMLSFVENNKLTLLNTFYCLPPPRPNGLFYKFQSANRGKGKAGLEYILTEQTDRRLVRIVNFRPPPLASSESDHNLVYAKVRIPRTSAPNR 678
GY + +SG + K K+G H VG+AIK+ + + G+ +E I+ RL+K RL I ++ +TF+V YAPTE V K + TA + + V +R++ V L DANA TG+R G +A+ ++GAYGRD+ N NG+R+L N+L+L NT++ P G+ + FQS+N+GK K L++IL Q DRR VR V+ + +SDHNLV VR+P APNR
Sbjct: 32 GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEKGRTVECINPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDGEIREVHSRDHLVVLMDANARTGRRRDGCCDAK--IMGAYGRDIMNNNGERLLGLASGNQLSLTNTYFRTPK---GGVQHTFQSSNKGKEKYRLDFILMRQADRRFVRNVSVKRVDF--KDSDHNLVLTTVRLPPRVAPNR 257
BLAST of mRNA_H-elongata_contig174643.4543.1 vs. uniprot
Match: A0A6H5L7A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7A7_9PHAE) HSP 1 Score: 155 bits (393), Expect = 5.260e-40 Identity = 97/233 (41.63%), Postives = 143/233 (61.37%), Query Frame = 1
Query: 4 GYRVYFSGDCSEVKGKKGQHWVGLAIKKELVNNTGKDDIAIESISARLLKARLSI-KSILITFLVVYAPTEEVTE------RQKAKYITAPNSIVLSVPAREY-VFLNDANATTGKRSQGGKEAESTVLGAYGRDVDNENGKRMLSFVENNKLTLLNTFYCLPPPRPNGLFYKFQSANRGKGKAGLEYILTEQTDRRLVRIVNFRPPPLASSESDHNLVYAKVRIPRTSAPNR 678
GY + +SG + K K+G H VG+AIK+ + + G++ +E IS RL+K RL I ++ +TF+V YAPTE V K + TA ++ + V +R++ V L DANA TG+R G +A+ ++GAYGRD+ N NG+R+L +N+L+L NT++ P G+ + FQS+N+GK K L++IL QTDRR VR V+ + +SDHNLV VR+P APNR
Sbjct: 32 GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGCCDAK--IMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPK---GGVQHTFQSSNKGKEKYRLDFILMRQTDRRFVRNVSVKRVDF--KDSDHNLVLTTVRLPPRVAPNR 257
BLAST of mRNA_H-elongata_contig174643.4543.1 vs. uniprot
Match: A0A6H5JM04_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM04_9PHAE) HSP 1 Score: 152 bits (384), Expect = 5.780e-40 Identity = 96/233 (41.20%), Postives = 142/233 (60.94%), Query Frame = 1
Query: 4 GYRVYFSGDCSEVKGKKGQHWVGLAIKKELVNNTGKDDIAIESISARLLKARLSI-KSILITFLVVYAPTEEVTE------RQKAKYITAPNSIVLSVPAREY-VFLNDANATTGKRSQGGKEAESTVLGAYGRDVDNENGKRMLSFVENNKLTLLNTFYCLPPPRPNGLFYKFQSANRGKGKAGLEYILTEQTDRRLVRIVNFRPPPLASSESDHNLVYAKVRIPRTSAPNR 678
GY + +SG + K K+G H VG+AIK+ + + G++ +E IS RL+K RL I ++ +TF+V YAPTE V K + TAP++ + V +R++ V L DANA TG+R G +A+ ++GAYGRD+ N NG+R+L +N+L+L +T + R G+ + FQS+N+GK K L++IL Q DRR VR V+ + +SDHNLV VR+P APNR
Sbjct: 32 GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTAPDAAIREVHSRDHLVVLMDANARTGRRRDGCCDAK--IMGAYGRDIMNNNGERLLGLASDNQLSLTSTCF-----RKCGVQHTFQSSNKGKEKYRLDFILMRQADRRFVRNVSVKRVDF--KDSDHNLVLTTVRLPPRVAPNR 255
BLAST of mRNA_H-elongata_contig174643.4543.1 vs. uniprot
Match: A0A6H5KC90_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC90_9PHAE) HSP 1 Score: 154 bits (389), Expect = 2.070e-39 Identity = 97/233 (41.63%), Postives = 143/233 (61.37%), Query Frame = 1
Query: 4 GYRVYFSGDCSEVKGKKGQHWVGLAIKKELVNNTGKDDIAIESISARLLKARLSI-KSILITFLVVYAPTEEVTE------RQKAKYITAPNSIVLSVPAREY-VFLNDANATTGKRSQGGKEAESTVLGAYGRDVDNENGKRMLSFVENNKLTLLNTFYCLPPPRPNGLFYKFQSANRGKGKAGLEYILTEQTDRRLVRIVNFRPPPLASSESDHNLVYAKVRIPRTSAPNR 678
GY + +SG + K K+G H VG+AIK+ + ++ G+ +E IS RL+K RL I ++ +TF+V YAPTE K + TA ++ + V +R++ V L DANA TG+R G +A+ ++GAYGRD+ N NG+R+L +N+L+L+NT++ P G+ + FQS+N+GK K L++IL QTDRRLVR N + +SDHNLV+ VR P APNR
Sbjct: 32 GYVIIWSGARAGTKDKRGVHGVGIAIKETMWDSVGEGGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRDGCCDAK--IMGAYGRDIMNNNGERLLGLAADNRLSLINTYFRTPK---GGVQHTFQSSNKGKEKHRLDFILMRQTDRRLVR--NASVKRVDFKDSDHNLVHTTVRSPPRVAPNR 257
BLAST of mRNA_H-elongata_contig174643.4543.1 vs. uniprot
Match: A0A6H5JQH5_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQH5_9PHAE) HSP 1 Score: 154 bits (389), Expect = 2.100e-39 Identity = 97/233 (41.63%), Postives = 143/233 (61.37%), Query Frame = 1
Query: 4 GYRVYFSGDCSEVKGKKGQHWVGLAIKKELVNNTGKDDIAIESISARLLKARLSI-KSILITFLVVYAPTEEVTE------RQKAKYITAPNSIVLSVPAREY-VFLNDANATTGKRSQGGKEAESTVLGAYGRDVDNENGKRMLSFVENNKLTLLNTFYCLPPPRPNGLFYKFQSANRGKGKAGLEYILTEQTDRRLVRIVNFRPPPLASSESDHNLVYAKVRIPRTSAPNR 678
GY + +SG + K K+G H VG+AIK+ + ++ G+ +E IS RL+K RL I ++ +TF+V YAPTE K + TA ++ + V +R++ V L DANA TG+R G +A+ ++GAYGRD+ N NG+R+L +N+L+L+NT++ P G+ + FQS+N+GK K L++IL QTDRRLVR N + +SDHNLV+ VR P APNR
Sbjct: 144 GYVIIWSGARAGTKDKRGVHGVGIAIKETMWDSVGEGGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRDGCCDAK--IMGAYGRDIMNNNGERLLGLAADNRLSLINTYFRTPK---GGVQHTFQSSNKGKEKHRLDFILMRQTDRRLVR--NASVKRVDFKDSDHNLVHTTVRSPPRVAPNR 369
BLAST of mRNA_H-elongata_contig174643.4543.1 vs. uniprot
Match: A0A6H5K3Q1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Q1_9PHAE) HSP 1 Score: 152 bits (384), Expect = 2.410e-39 Identity = 95/233 (40.77%), Postives = 142/233 (60.94%), Query Frame = 1
Query: 4 GYRVYFSGDCSEVKGKKGQHWVGLAIKKELVNNTGKDDIAIESISARLLKARLSI-KSILITFLVVYAPTEEVTERQ------KAKYITAPNSIVLSVPAREY-VFLNDANATTGKRSQGGKEAESTVLGAYGRDVDNENGKRMLSFVENNKLTLLNTFYCLPPPRPNGLFYKFQSANRGKGKAGLEYILTEQTDRRLVRIVNFRPPPLASSESDHNLVYAKVRIPRTSAPNR 678
GY + +SG + K K+G H VG+AIK+ + + G++ +E IS RL+K RL I ++ +TFLV YAPTE V + K + TA ++ + V +R++ V L DANA TG+R +G +A+ ++GAYGRD+ N NG+R+L +N+L+L NT++ P G+ + FQS+N+GK K L++I Q DRR VR V+ + +SDH LV VR+P APNR
Sbjct: 229 GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFLVGYAPTETVRTTEGCDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRKGCCDAK--IMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPK---GGVQHTFQSSNKGKEKYRLDFIFMRQADRRFVRNVSVKRVDF--KDSDHKLVLTTVRLPPRVAPNR 454
BLAST of mRNA_H-elongata_contig174643.4543.1 vs. uniprot
Match: A0A6H5K1H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H7_9PHAE) HSP 1 Score: 154 bits (388), Expect = 2.790e-39 Identity = 96/233 (41.20%), Postives = 142/233 (60.94%), Query Frame = 1
Query: 4 GYRVYFSGDCSEVKGKKGQHWVGLAIKKELVNNTGKDDIAIESISARLLKARLSI-KSILITFLVVYAPTEEVTE------RQKAKYITAPNSIVLSVPAREY-VFLNDANATTGKRSQGGKEAESTVLGAYGRDVDNENGKRMLSFVENNKLTLLNTFYCLPPPRPNGLFYKFQSANRGKGKAGLEYILTEQTDRRLVRIVNFRPPPLASSESDHNLVYAKVRIPRTSAPNR 678
GY + +SG + K K+G H VG+AIK+ + + G++ +E IS RL+K RL I ++ +TF+V YAPTE V K + TA ++ + V +R++ V L DANA TG+R G +A+ ++GAYGRD+ N NG+R+L +N+L+L NT++ P G+ + FQS+N+GK K L++IL Q DRR VR V+ + +SDHNLV VR+P APNR
Sbjct: 711 GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVRYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGCCDAK--IMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPK---GGVQHTFQSSNKGKEKYRLDFILMRQADRRFVRNVSVKRVDF--KDSDHNLVLTTVRLPPRVAPNR 936 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig174643.4543.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig174643.4543.1 >prot_H-elongata_contig174643.4543.1 ID=prot_H-elongata_contig174643.4543.1|Name=mRNA_H-elongata_contig174643.4543.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=226bp SGYRVYFSGDCSEVKGKKGQHWVGLAIKKELVNNTGKDDIAIESISARLLback to top mRNA from alignment at H-elongata_contig174643:3..680- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig174643.4543.1 ID=mRNA_H-elongata_contig174643.4543.1|Name=mRNA_H-elongata_contig174643.4543.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=678bp|location=Sequence derived from alignment at H-elongata_contig174643:3..680- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig174643:3..680- >mRNA_H-elongata_contig174643.4543.1 ID=mRNA_H-elongata_contig174643.4543.1|Name=mRNA_H-elongata_contig174643.4543.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1356bp|location=Sequence derived from alignment at H-elongata_contig174643:3..680- (Himanthalia elongata Himel1 dioecious)back to top |