mRNA_H-elongata_contig174613.4541.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig174613.4541.1
Unique NamemRNA_H-elongata_contig174613.4541.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig174613.4541.1 vs. uniprot
Match: D7FP17_ECTSI (Peptidylprolyl isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP17_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 4.520e-34
Identity = 64/87 (73.56%), Postives = 73/87 (83.91%), Query Frame = 1
Query:    1 VLYDPSDTTYKNLLGMFFDRHDPTQANGQGNDKGTQYRAGVYFHDDEQRKEAEAFFEDEKKKRGLKKIATELEEAKEFYDAEEEHQQ 261
            VLYDPS+T Y +LL +FF RHDPTQ NGQGNDKGTQYRAGVYFHD++Q+  AE FF DE   R LKK+ATELEE +EFYDAE+EHQQ
Sbjct:  224 VLYDPSETKYADLLTIFFGRHDPTQVNGQGNDKGTQYRAGVYFHDEQQKAVAEKFFADEISARRLKKLATELEEVREFYDAEDEHQQ 310          
BLAST of mRNA_H-elongata_contig174613.4541.1 vs. uniprot
Match: D8SPA2_SELML (Peptide-methionine (S)-S-oxide reductase n=4 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8SPA2_SELML)

HSP 1 Score: 86.7 bits (213), Expect = 1.640e-19
Identity = 48/87 (55.17%), Postives = 61/87 (70.11%), Query Frame = 1
Query:    1 VLYDPSDTTYKNLLGMFFDRHDPTQANGQGNDKGTQYRAGVYFHDDEQRKEAEAFFEDEKKKRGLKKIATELEEAKEFYDAEEEHQQ 261
            V YDP + +Y  LL  F+ +HDPTQA+GQGND G+QYR+G+YFH  EQ K A+   E E+++ G KKI TEL  A  FY AE+ HQQ
Sbjct:   55 VEYDPKEVSYTALLDAFWKKHDPTQADGQGNDIGSQYRSGIYFHTPEQEKLAKQSLEQEQQRLG-KKIVTELLPATTFYPAEDYHQQ 140          
BLAST of mRNA_H-elongata_contig174613.4541.1 vs. uniprot
Match: A0A2D9IS81_9RHOB (Peptide methionine sulfoxide reductase MsrA n=1 Tax=Rhodobacteraceae bacterium TaxID=1904441 RepID=A0A2D9IS81_9RHOB)

HSP 1 Score: 87.0 bits (214), Expect = 2.150e-19
Identity = 45/90 (50.00%), Postives = 63/90 (70.00%), Query Frame = 1
Query:    1 VLYDPSDTTYKNLLGMFFDRHDPTQANGQGNDKGTQYRAGVYFHDDEQRK---EAEAFFEDEKKKRGLKKIATELEEAKEFYDAEEEHQQ 261
            VL+DPS+ +Y  LL  F++ HDPTQ N QGND GTQYR+G Y+  D Q++   E +A +ED+ +K G   I TE+++A EF+ AE+ HQQ
Sbjct:   74 VLFDPSELSYLELLSTFWENHDPTQLNRQGNDIGTQYRSGAYYFSDTQKRILLETKAIYEDDLQKAGFSSIMTEIKKAPEFFIAEDYHQQ 163          
BLAST of mRNA_H-elongata_contig174613.4541.1 vs. uniprot
Match: UPI000401FF51 (peptide-methionine (S)-S-oxide reductase MsrA n=1 Tax=Salinarimonas rosea TaxID=552063 RepID=UPI000401FF51)

HSP 1 Score: 86.7 bits (213), Expect = 5.520e-19
Identity = 47/90 (52.22%), Postives = 61/90 (67.78%), Query Frame = 1
Query:    1 VLYDPSDTTYKNLLGMFFDRHDPTQANGQGNDKGTQYRAGVYFHDDEQRKEAEAF---FEDEKKKRGLKKIATELEEAKEFYDAEEEHQQ 261
            V+YDP++ +Y+ LL  FF+ HDPTQ   QGND GTQYR+GVY HDD QR+ AEA    ++   ++ G   I TE+ EA  FY AE+ HQQ
Sbjct:  101 VVYDPAEISYERLLEAFFESHDPTQGMRQGNDVGTQYRSGVYVHDDGQRRAAEAVRAAYDARLRENGFPAITTEIREAGPFYFAEDYHQQ 190          
BLAST of mRNA_H-elongata_contig174613.4541.1 vs. uniprot
Match: A0A835Z6G6_9STRA (Peptide-methionine (S)-S-oxide reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6G6_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 6.600e-19
Identity = 50/90 (55.56%), Postives = 57/90 (63.33%), Query Frame = 1
Query:    1 VLYDPSDTTYKNLLGMFFDRHDPTQANGQGNDKGTQYRAGVYFHDDEQRKEAEAFFEDEKKKRGLKKIATELEEAKEFYDAEEEHQQVTS 270
            V YDP   +YK L+  FF R DPTQ NGQGND+GTQYR+GVYFH  EQ   A+  FE    K   + IATEL+ A  FY AE  HQQ  S
Sbjct:  160 VYYDPKQVSYKTLVEEFFSRVDPTQVNGQGNDRGTQYRSGVYFHTPEQEAAAKEVFE-RLAKENSRPIATELKAAAVFYPAEPYHQQYLS 248          
BLAST of mRNA_H-elongata_contig174613.4541.1 vs. uniprot
Match: UPI0019F27A28 (Peptide-methionine (S)-S-oxide reductase MsrA n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=UPI0019F27A28)

HSP 1 Score: 85.1 bits (209), Expect = 8.430e-19
Identity = 47/90 (52.22%), Postives = 61/90 (67.78%), Query Frame = 1
Query:    1 VLYDPSDTTYKNLLGMFFDRHDPTQANGQGNDKGTQYRAGVYFHDDEQRKEAEA---FFEDEKKKRGLKKIATELEEAKEFYDAEEEHQQ 261
            V+YDP   + K LL +F++ HDPTQ   QGND+GTQYR+G+Y  DD QRK AE+   FF+ E  K    +I TE+ +A EFY AE+ HQQ
Sbjct:   68 VVYDPEKISTKQLLKVFWESHDPTQGMQQGNDRGTQYRSGIYVFDDGQRKNAESTRDFFQQELAKNNYGQITTEILDAPEFYYAEDYHQQ 157          
BLAST of mRNA_H-elongata_contig174613.4541.1 vs. uniprot
Match: W2Q2P9_PHYPN (Peptide-methionine (S)-S-oxide reductase n=1 Tax=Phytophthora parasitica (strain INRA-310) TaxID=761204 RepID=W2Q2P9_PHYPN)

HSP 1 Score: 84.3 bits (207), Expect = 1.080e-18
Identity = 46/86 (53.49%), Postives = 62/86 (72.09%), Query Frame = 1
Query:    1 VLYDPSDTTYKNLLGMFFDRHDPTQANGQGNDKGTQYRAGVYFHDDEQRKEAEAFFEDEKKKRGLKKIATELEEAKEFYDAEEEHQ 258
            ++YD S T+Y+ LL  F+  HDPT  N Q NDKGTQYR+G+Y+H ++QRK A A  E E +K  +K I TE+ EAK+F+DAE+ HQ
Sbjct:   52 IVYDESQTSYEALLNKFWAIHDPTTLNRQKNDKGTQYRSGIYYHSEDQRKAALASKE-EHQKTLIKPIVTEIMEAKQFWDAEDYHQ 136          
BLAST of mRNA_H-elongata_contig174613.4541.1 vs. uniprot
Match: A0A5N6LUS4_9ASTR (Peptide-methionine (S)-S-oxide reductase n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6LUS4_9ASTR)

HSP 1 Score: 86.3 bits (212), Expect = 1.360e-18
Identity = 48/87 (55.17%), Postives = 60/87 (68.97%), Query Frame = 1
Query:    1 VLYDPSDTTYKNLLGMFFDRHDPTQANGQGNDKGTQYRAGVYFHDDEQRKEAEAFFEDEKKKRGLKKIATELEEAKEFYDAEEEHQQ 261
            V YDP + +Y+NLL  F++RHDPT  N QGND GTQYR+G+YF+  EQ K A    E  +KK   +KI TE+  AK+FY AEE HQQ
Sbjct:  142 VQYDPKECSYENLLDCFWERHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAALESMEKHQKKLN-RKIVTEILPAKKFYRAEEYHQQ 227          
BLAST of mRNA_H-elongata_contig174613.4541.1 vs. uniprot
Match: A0A523EHL8_9BACT (Peptide methionine sulfoxide reductase MsrA n=2 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A523EHL8_9BACT)

HSP 1 Score: 84.7 bits (208), Expect = 1.730e-18
Identity = 48/90 (53.33%), Postives = 60/90 (66.67%), Query Frame = 1
Query:    1 VLYDPSDTTYKNLLGMFFDRHDPTQANGQGNDKGTQYRAGVYFHDDEQRKEAEAF---FEDEKKKRGLKKIATELEEAKEFYDAEEEHQQ 261
            V+YDP  TTY  LL +F++ HDPTQ   QGND+GTQYR+GVY +D EQR  AEA    +    +  G   I TEL +A EFY AE++HQQ
Sbjct:   77 VVYDPEKTTYDALLKIFWENHDPTQGMRQGNDRGTQYRSGVYVYDAEQRAAAEASRDAYRQTLESAGYDAITTELIDAPEFYFAEDDHQQ 166          
BLAST of mRNA_H-elongata_contig174613.4541.1 vs. uniprot
Match: A9SML9_PHYPA (Peptide-methionine (S)-S-oxide reductase n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A9SML9_PHYPA)

HSP 1 Score: 84.0 bits (206), Expect = 1.930e-18
Identity = 46/85 (54.12%), Postives = 62/85 (72.94%), Query Frame = 1
Query:    7 YDPSDTTYKNLLGMFFDRHDPTQANGQGNDKGTQYRAGVYFHDDEQRKEAEAFFEDEKKKRGLKKIATELEEAKEFYDAEEEHQQ 261
            YDPS  +YK LL +F+ +HDPTQ N QGND G+QYR+G+Y+H +EQ+ EA A  ++E+  R  K+IATE+  A  +Y AEE HQQ
Sbjct:   60 YDPSQVSYKQLLDVFWKKHDPTQKNRQGNDVGSQYRSGIYYHTEEQKVEAIASMKEEEA-RLKKQIATEILPATTYYLAEEYHQQ 143          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig174613.4541.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FP17_ECTSI4.520e-3473.56Peptidylprolyl isomerase n=1 Tax=Ectocarpus silicu... [more]
D8SPA2_SELML1.640e-1955.17Peptide-methionine (S)-S-oxide reductase n=4 Tax=S... [more]
A0A2D9IS81_9RHOB2.150e-1950.00Peptide methionine sulfoxide reductase MsrA n=1 Ta... [more]
UPI000401FF515.520e-1952.22peptide-methionine (S)-S-oxide reductase MsrA n=1 ... [more]
A0A835Z6G6_9STRA6.600e-1955.56Peptide-methionine (S)-S-oxide reductase n=1 Tax=T... [more]
UPI0019F27A288.430e-1952.22Peptide-methionine (S)-S-oxide reductase MsrA n=1 ... [more]
W2Q2P9_PHYPN1.080e-1853.49Peptide-methionine (S)-S-oxide reductase n=1 Tax=P... [more]
A0A5N6LUS4_9ASTR1.360e-1855.17Peptide-methionine (S)-S-oxide reductase n=1 Tax=M... [more]
A0A523EHL8_9BACT1.730e-1853.33Peptide methionine sulfoxide reductase MsrA n=2 Ta... [more]
A9SML9_PHYPA1.930e-1854.12Peptide-methionine (S)-S-oxide reductase n=2 Tax=P... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig174613contigH-elongata_contig174613:450..1192 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score131.7
Seed ortholog evalue1.7e-28
Seed eggNOG ortholog2880.D7FP17
Preferred nameMSRA4
KEGG koko:K02214,ko:K07304,ko:K14442,ko:K16914
KEGG Pathwayko03018,ko04110,ko04111,ko04113,map03018,map04110,map04111,map04113
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0006464,GO:0006807,GO:0006950,GO:0006970,GO:0006979,GO:0008113,GO:0008150,GO:0008152,GO:0009314,GO:0009416,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009628,GO:0009651,GO:0009719,GO:0009725,GO:0009735,GO:0009941,GO:0009987,GO:0010033,GO:0016491,GO:0016667,GO:0016671,GO:0019538,GO:0031967,GO:0031975,GO:0033554,GO:0033744,GO:0034599,GO:0036211,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0051716,GO:0055114,GO:0070887,GO:0071704,GO:0080167,GO:1901564
EggNOG free text desc.peptide-methionine (S)-S-oxide reductase activity
EggNOG OGsCOG0225@1,KOG1635@2759
EC1.14.11.27,1.8.4.11,2.7.11.1,3.6.4.13
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko03009,ko03019,ko03032,ko03036
Hectar predicted targeting categoryother localisation
Exons2
Model size273
Cds size273
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930013.0642295-CDS-H-elongata_contig174613:449..5931622930013.0642295-CDS-H-elongata_contig174613:449..593Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig174613 450..593 +
1691679246.0982296-CDS-H-elongata_contig174613:449..5931691679246.0982296-CDS-H-elongata_contig174613:449..593Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig174613 450..593 +
1622930013.0816512-CDS-H-elongata_contig174613:1063..11921622930013.0816512-CDS-H-elongata_contig174613:1063..1192Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig174613 1064..1192 +
1691679246.123102-CDS-H-elongata_contig174613:1063..11921691679246.123102-CDS-H-elongata_contig174613:1063..1192Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig174613 1064..1192 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig174613.4541.1prot_H-elongata_contig174613.4541.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig174613 450..1192 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig174613.4541.1

>prot_H-elongata_contig174613.4541.1 ID=prot_H-elongata_contig174613.4541.1|Name=mRNA_H-elongata_contig174613.4541.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=91bp
VLYDPSDTTYKNLLGMFFDRHDPTQANGQGNDKGTQYRAGVYFHDDEQRK
EAEAFFEDEKKKRGLKKIATELEEAKEFYDAEEEHQQVTS*
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mRNA from alignment at H-elongata_contig174613:450..1192+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig174613.4541.1 ID=mRNA_H-elongata_contig174613.4541.1|Name=mRNA_H-elongata_contig174613.4541.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=743bp|location=Sequence derived from alignment at H-elongata_contig174613:450..1192+ (Himanthalia elongata Himel1 dioecious)
GTCCTCTACGATCCGTCGGACACCACGTACAAGAATCTTCTGGGAATGTT CTTCGACAGGCATGACCCGACGCAGGCGAATGGCCAGGGCAACGATAAGG GCACCCAGTATCGGGCGGGAGTGTATTTTCACGACGATGAGCAGGTGACA GAATGGGGGCCTGCCCCCAAGAGAACTTGTATCTGGCACATTTCTACCAG ATACGGAGGCGTTTTTTTCCCGAAAGAAGCAGTGCGGAGGAGAACCTAGC CAGTAGAGTTATCGGTTTCATGCATCGAATGTGATCGTTACCGCAGCGTA TCGGTACAGGTGTACGCTCTCGTGAACAAAAAGAACGTTGCATTCTTCCA TGTGTCCAGTCTCTTCGGCTTCGCAACCCTATTGCTCTGGCGCTGTCGCT GGCTCTGACGCTGACTATATCGCTCTCGGAAGACAGTTCGGACCAGACAC CCTCTTGCGTTTCCGTTGCACTTTTCATCCCTTCCTTGTACCATATTTAC CCCCCCCCCCTATCCCCTCCTCATATCCCCTCGCGCAATCGTAGCGGAGG CGTTTGTATCACATCTACCCCCTTATCCCTTAATTATCCCCCCGTGTGTA ATACCTATTACTAGCGAAAGGAAGCAGAGGCGTTCTTCGAGGACGAAAAA AAAAAGCGCGGCCTTAAGAAAATCGCCACCGAGCTAGAAGAGGCGAAAGA GTTCTACGACGCGGAGGAGGAGCACCAGCAGGTGACTAGCTAA
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Coding sequence (CDS) from alignment at H-elongata_contig174613:450..1192+

>mRNA_H-elongata_contig174613.4541.1 ID=mRNA_H-elongata_contig174613.4541.1|Name=mRNA_H-elongata_contig174613.4541.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=546bp|location=Sequence derived from alignment at H-elongata_contig174613:450..1192+ (Himanthalia elongata Himel1 dioecious)
GTCCTCTACGATCCGTCGGACACCACGTACAAGAATCTTCTGGGAATGTT
CTTCGACAGGCATGACCCGACGCAGGCGAATGGCCAGGGCAACGATAAGG
GCACCCAGTATCGGGCGGGAGTGTATTTTCACGACGATGAGCAGGTCCTC
TACGATCCGTCGGACACCACGTACAAGAATCTTCTGGGAATGTTCTTCGA
CAGGCATGACCCGACGCAGGCGAATGGCCAGGGCAACGATAAGGGCACCC
AGTATCGGGCGGGAGTGTATTTTCACGACGATGAGCAGCGAAAGGAAGCA
GAGGCGTTCTTCGAGGACGAAAAAAAAAAGCGCGGCCTTAAGAAAATCGC
CACCGAGCTAGAAGAGGCGAAAGAGTTCTACGACGCGGAGGAGGAGCACC
AGCAGGTGACTAGCTAACGAAAGGAAGCAGAGGCGTTCTTCGAGGACGAA
AAAAAAAAGCGCGGCCTTAAGAAAATCGCCACCGAGCTAGAAGAGGCGAA
AGAGTTCTACGACGCGGAGGAGGAGCACCAGCAGGTGACTAGCTAA
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