mRNA_H-elongata_contig1746.4539.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig1746.4539.1 vs. uniprot
Match: A0A6H5K6L1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6L1_9PHAE) HSP 1 Score: 561 bits (1445), Expect = 6.100e-187 Identity = 288/479 (60.13%), Postives = 361/479 (75.37%), Query Frame = 3
Query: 3 STTVYECPNSDACSGGSDVSSYCSEGFIGPLCAVCDYDYYPSGSYECATXXXXXXXXXXXXXIIFGGVIGLFLVFLMKGASVIEEKAREALEDDDDNEEAQAKVLGALNARIYQFVKQWKETLVVRLKIMVTHFQVVTTFPTVLDVQWPDAFSRYADKFSIISLDFWGILTQTCFFSSDFLKQLVFTTLLPFAIVLILVLNYMRGVRKAGSDPIKKRAAWDTMAAGVLLTAFFFYIITSTLVLKAFDCKEFEDGSSYLKADYSINCDSITYTFIYRYGIAMAIIYPAGIPATYLIALYLRRRHINPNPLDPDTSMMTREADPTIQKTKFLWGTYRPSVYFYEVWECVRKLFLTGLLVYFKEGTSTQVVVAILLTLAGLRVLSGLRPYQREDENNLAEASIWVTFITLFVGLIIKAGVAEDDGYDSVALGVILTFMNMSLLVLAVFQIFWTTSVYFKEKWSEFLGVELN-----AGKGEN 1424
S VYECPN+DAC GG+ +YCS+GF GPLCAVC+ DYYPSGSYEC XXXXXX +D + +G N+++++FVKQWK+TLVVR KI+VTHFQ+VTTFP VLDVQWP+AF+RYADK S+ISLDFWG+L+Q+C+F DFLK+LVFTTLLP IV +L+ Y + VR ++ +RAA+D A GVLLT FFFYI+TSTL+++AFDC++F+DGSSYLKAD+ I+C+S YTFIY Y I MAII+PAGIP TYL LYL + INP+P++P+ S+ RE+D TI+KTKFLWGTYRP+VY+YEVWECVRKLFLTGLLVYF+EGTSTQVV+A+L+TLAGLRVL+GL+PYQREDENNLAEAS+WVTF+TLF GL+IKA VA++DGYD+VALGVIL+ MN +L LA FQI WTTS FK+ G++++ +G+G N
Sbjct: 102 SDIVYECPNADACVGGATAETYCSDGFKGPLCAVCENDYYPSGSYECLECSGGNAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANDAAASNVMAVGT-NSKVFKFVKQWKDTLVVRFKILVTHFQIVTTFPVVLDVQWPEAFNRYADKVSVISLDFWGLLSQSCWFQPDFLKRLVFTTLLPLGIVAVLMAQYAKTVRTRSTEA-SRRAAFDNTAGGVLLTGFFFYIVTSTLIMEAFDCQDFDDGSSYLKADFRISCNSNKYTFIYAYAIIMAIIFPAGIPVTYLAVLYLGKERINPDPVNPEVSIKKRESDATIKKTKFLWGTYRPAVYYYEVWECVRKLFLTGLLVYFEEGTSTQVVIAMLITLAGLRVLAGLQPYQREDENNLAEASLWVTFLTLFAGLLIKADVADEDGYDTVALGVILSIMNAALFALAAFQILWTTSQLFKDTCGGAFGIDISKKQRPSGQGHN 578
BLAST of mRNA_H-elongata_contig1746.4539.1 vs. uniprot
Match: D7G9D7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9D7_ECTSI) HSP 1 Score: 534 bits (1375), Expect = 3.590e-179 Identity = 265/407 (65.11%), Postives = 334/407 (82.06%), Query Frame = 3
Query: 189 IIFGGVIGLFLVFLMKGASVIEEKAREALEDDDDNEEAQAKVLGA-LNARIYQFVKQWKETLVVRLKIMVTHFQVVTTFPTVLDVQWPDAFSRYADKFSIISLDFWGILTQTCFFSSDFLKQLVFTTLLPFAIVLILVLNYMRGVRKAGSDPIKKRAAWDTMAAGVLLTAFFFYIITSTLVLKAFDCKEFEDGSSYLKADYSINCDSITYTFIYRYGIAMAIIYPAGIPATYLIALYLRRRHINPNPLDPDTSMMTREADPTIQKTKFLWGTYRPSVYFYEVWECVRKLFLTGLLVYFKEGTSTQVVVAILLTLAGLRVLSGLRPYQREDENNLAEASIWVTFITLFVGLIIKAGVAEDDGYDSVALGVILTFMNMSLLVLAVFQIFWTTSVYFKEKWSEFLGVELN 1406
I+F + +FLV L K +S +EEKARE DDD N+ A + V+ N+++++F+KQWK+TLVVR KI+VTHFQ+VTTFP VLDVQWP+AF+RYADK S+ISLDFWG+L+Q+C+F DFLKQLVFTTLLP IV +L+ Y + VR ++ +RAA+D A GVLLT FFFYI+TSTL+++AFDC++F+DGSSYLKAD+ I+C S YTFIY Y I MAII+PAGIP TYL LYL + INP+P+ P+ S+ RE+D TI+KTKFLWGTYRP+VY+YEVWECVRKLFLTGLLVYF++GTSTQVV+A+L+TLAGLRVL+GLRPYQREDENNLAEAS+WVTF+TLF GL+IKA VA++DGYD+VALGVIL+ MN +L LA FQI WTTS +FKEK G++++
Sbjct: 5 ILFLAALAVFLVVLSKASSTLEEKARE--HDDDANDAAASNVMTVGTNSKVFKFIKQWKDTLVVRFKILVTHFQIVTTFPVVLDVQWPEAFNRYADKVSVISLDFWGLLSQSCWFQPDFLKQLVFTTLLPLGIVAVLMAQYAKTVRTRSTEA-SRRAAFDNTAGGVLLTGFFFYIVTSTLIMEAFDCQDFDDGSSYLKADFRISCGSNKYTFIYVYAIIMAIIFPAGIPLTYLAVLYLGKERINPDPVHPEVSIKKRESDATIKKTKFLWGTYRPAVYYYEVWECVRKLFLTGLLVYFEQGTSTQVVIAMLITLAGLRVLAGLRPYQREDENNLAEASLWVTFLTLFAGLLIKADVADEDGYDTVALGVILSIMNAALFALAAFQILWTTSQFFKEKCGGAFGIDIS 408
BLAST of mRNA_H-elongata_contig1746.4539.1 vs. uniprot
Match: A0A836CJ54_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ54_9STRA) HSP 1 Score: 285 bits (730), Expect = 7.610e-80 Identity = 152/359 (42.34%), Postives = 219/359 (61.00%), Query Frame = 3
Query: 330 ARIYQFVKQWKETLVVRLKIMVTHFQVVTTFPTVLDVQWPDAFSRYADKFSIISLDFWGILTQTCFFSSDFLKQLVFTTLLPFAIVLIL--------VLNYMRGVRKAGSDPIKKRAAWDTMAAGVLLTAFFFYIITSTLVLKAFDCKEFE------DGSSYLKADYSINCDSITYTFIYRYGIAMAIIYPAGIPATYLIALYLRRRHINPNPLDPDTSMMTREADPTIQKTKFLWGTYRPSVYFYEVWECVRKLFLTGLLVYFKEGTSTQVVVAILLTLAGLRVLSGLRPYQREDENNLAEASIWVTFITLFVGLIIKAGVAEDDGYDSVALGVILTFMNMSLLVLAVFQIFWTTSVY 1364
AR ++KQ TL+VR KI+VTHFQ+V P +L V +P +F+ + ++ +LDFWG+L+ CFF +FL +L+F+TLLP AI+ + VL RG GS + + +WD LLT F FY++ ST VL+ FDC + + +SYL+ADYS++CDS Y Y I M +YP G+P Y L L R+ ++P D SM R+AD ++KT+FLWG+YRP ++YEVW + KL L+GLLVYF++GT TQ VA+LLTL + + + + P+ R DEN LAE + W T +TL L+I A DG + LG IL+ +N+ ++VLAV Q+FW+ S +
Sbjct: 157 ARAVAWLKQRSATLMVRFKILVTHFQIVAGLPALLRVNFPQSFTALTNTLNVFNLDFWGLLSSGCFFEVNFLNKLLFSTLLPLAIIAAIFGVHGARCVLARGRGSGSGGSA-LWRHGSWDASLQAALLTLFMFYVVASTTVLQTFDCDTVQLSSATGETASYLRADYSVDCDSAAYRRSRVYAIIMTAVYPIGVPFLYASLLLLSRQRLDPVRADAKRSMEVRDADAGVRKTRFLWGSYRPRAFWYEVWLTLYKLLLSGLLVYFRQGTPTQTTVALLLTLVAMWLQTLVAPFTRRDENRLAECAYWATILTLIAALLISASDTGSDGVNMALLGAILSIINLLVIVLAVVQLFWSASAW 514
BLAST of mRNA_H-elongata_contig1746.4539.1 vs. uniprot
Match: D7FHH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHH1_ECTSI) HSP 1 Score: 194 bits (492), Expect = 1.730e-47 Identity = 136/447 (30.43%), Postives = 213/447 (47.65%), Query Frame = 3
Query: 3 STTVYECPNSDACSGG-SDVSSYCSEGFIGPLCAVCDYDYYPSGSYECATXXXXXXXXXXXXXIIFGGVIGLFLVFLMKGASVIEEKAREALEDDDDNEEAQAKVLGALNARIYQFVKQWKETLVVRLKIMVTHFQVVTTFPTVLDVQWPDAFSRYADKFSIISLDFWGILTQTCFFSSDFLKQLVFTTLLPFAIVLILVLNYMRGVRKAGSDPIKKRAAWDTMAAGVLLTAFFFYIITSTLVLKAFDCKEFEDGSSYLKADYSINCDSITYTFIYRYGIAMAIIYPAGIPATYLIALYLRRRHINPNPLDPDTSMMTREADPTIQKTKFLWGTYRPSVYFYEVWECVRKLFLTGLLVYFKEGTSTQVVVAILLTLAGLRVLSGLRPYQREDENNLAEASIWVTFITLFVGLIIKAGVAEDDGYDSVALGVILTFMNMSLLVLAVFQ 1340
ST V C N DAC GG + + YC EG+ GP CA+C DY + C+ + VIGLF V +V+ A D N A+ + +++ + LKI+V +Q+VT F + +V +PD + R+ + + + D +L+ C DF +L+ +T+ P +L L Y G R + + WD + VLL F Y S++V + F C + E G YL+ADY I CDS + Y M ++YP GIPA Y AL LR R + DPD RE P + LW YRPSVY+YEV EC R++ LTGL+V+ T+ Q+ + +++T+ + LRPY + + ++ S V F++++V L++K V+ + G +L + +++ V +
Sbjct: 574 STEVLACYNVDACVGGITGATEYCVEGYEGPYCAICSDDYSAQLGFTCSKCPNRAGGILLATAL---AVIGLFTV-----VAVVSYVAWRV----DPNTGC------AMAGHLKRYLP------LQTLKILVVAWQIVTQFTSAANVTYPDVYQRFLNGLDVFNFDISWVLSAGCVMDLDFHDRLLLSTIGPIMALLFLAATYRAGSRINRGNAATLQLVWDRHVSMVLLLVFLVYSGVSSVVFQTFACDQLEGGGEYLRADYRIECDSSKHQGFRVYAGFMILLYPVGIPAFYG-ALLLRDRDVLEK--DPDG----REDPPRVASISNLWQPYRPSVYYYEVIECGRRILLTGLVVFIYPNTAAQIAITLIMTVVFAVLSEALRPYAQAWDTWVSRVSHAVVFMSVYVALLLKVDVSNEKGSSQKVFEAVLVAAHACMILAVVVE 989
BLAST of mRNA_H-elongata_contig1746.4539.1 vs. uniprot
Match: A0A6H5L324_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L324_9PHAE) HSP 1 Score: 187 bits (476), Expect = 3.390e-45 Identity = 124/451 (27.49%), Postives = 211/451 (46.78%), Query Frame = 3
Query: 3 STTVYECPNSDACSGGSDVSSYCSEGFIGPLCAVCDYDYYPSGSYECATXXXXXXXXXXXXXIIFGGVIGLF-----LVFLMKGASVIEEKAREALEDDDDNEEAQAKVLGALNARIYQFVKQWKETLVVRLKIMVTHFQVVTTFPTVLDVQWPDAFSRYADKFSIISLDFWGILTQTCFFSSDFLKQLVFTTLLPFAIVLILVLNYMRGVRKAGSDPIKKRAAWDTMAAGVLLTAFFFYIITSTLVLKAFDCKEFEDGSSYLKADYSINCDSITYTFIYRYGIAMAIIYPAGIPATYLIALYLRRRHINPNPLDPDTSMMTREADPTIQKTKFLWGTYRPSVYFYEVWECVRKLFLTGLLVYFKEGTSTQVVVAILLTLAGLRVLSGLRPYQREDENNLAEASIWVTFITLFVGLIIKAGVAEDDGYDSVALGVILTFMNMSLLVLAVFQ 1340
ST + EC + AC GGS + +YCSEG+IGP CAVC Y P S C + ++F IGL +V + + SV+E R+ + + AL AR+ Q V + +KI+V +Q+VT + V +++P A+ + +++LD IL+ C + ++F +L+ T+ P ++ +L Y+ R+ R + L F Y S + + F C +DG+SYL+ADYS+ CD+ +T Y ++YP GIP + L+ R + RE ++ LW Y+PS Y+YEV EC R++ LTG V+ +S QV + +LL + V L P+ R E L A +V F ++++ L+++ V+++ ++ ++++ ++ V Q
Sbjct: 580 STDIRECFHKKACDGGSAIGTYCSEGYIGPYCAVCAAGYSPGYSRTCKSCMGNSKKSA----LVFAAAIGLLALAAVMVLVSRLVSVVEVGPRQQXXXXXXGSKGWRRTCSALQARVRQTVP------LTAVKIVVVVWQIVTQYSDVAGIEYPGAYQDFLSVVDVVNLDLGFILSFACVYDTNFYDRLLMATIGPVLVLGLLGCTYVVARRRNRHCEEAMRDVQRRHLSVTLFVMFVIYAAVSYTIFETFVCDTLDDGNSYLRADYSLTCDTPLHTAYRVYAGLAVLVYPVGIPCIFGWWLFKNRHELKQE---------DREGQAELRPAADLWEPYKPSAYYYEVVECFRRIALTGFAVFIYPDSSAQVAIVLLLAAVFMVVSEILSPFARPVEMWLYRAGHYVVFASMYLALLLRVDVSDERDQSQEVFSGVIVMAHVAMFLVVVVQ 1011
BLAST of mRNA_H-elongata_contig1746.4539.1 vs. uniprot
Match: A0A6H5JSF5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSF5_9PHAE) HSP 1 Score: 186 bits (471), Expect = 7.150e-45 Identity = 126/448 (28.12%), Postives = 210/448 (46.88%), Query Frame = 3
Query: 3 STTVYECPNSDACSGGSDVSSYCSEGFIGPLCAVCDYDYYPSGSYECATXXXXXXXXXXXXXIIFGGVIGLFLVFLMKGASVIEEKAREALEDDDDNEEAQAKVLGALNARIYQFVKQWKETLVVRLKIMVTHFQVVTTFPTVLDVQWPDAFSRYADKFSIISLDFWGILTQTCFFSSDFLKQLVFTTLLPFAIVLILVLNYMRGVRKAGSDPIKKRAAWDTMAAGVLLTAFFFYIITSTLVLKAFDCKEFEDGSSYLKADYSINCDSITYTFIYRYGIAMAIIYPAGIPATYLIALYLRRRHINPNPLDPDTSMMTREADPTIQKTKFLWGTYRPSVYFYEVWECVRKLFLTGLLVYFKEGTSTQVVVAILLTLAGLRVLSGLRPYQREDENNLAEASIWVTFITLFVGLIIKAGVAEDDGYDSVALGVILTFMNMSLLVLAVFQIF 1346
S V EC + AC+GG+D +YC++G+ GP C+VC Y P +Y+C GV +V+ ++ DD ++A + L +R + FV V KI+V +Q++T F + +P+ + + + + ++LD IL+ +C +DF +L+ T+ P ++ +L L ++ G ++ RA + + L FF Y S V + F C +DG SYL+ADYS+ CD+ Y Y M +YP GIPAT+ L R+ D R+ +Q LW Y+PS Y+YE+ E VR++ LTG+ V+ G+S Q+ V +LL + L + L P+ ++ + L V +++V L++K V+E+ A V+L N+ + + V Q F
Sbjct: 597 SQVVVECYLTSACAGGTDPKNYCADGYEGPYCSVCADGYAPGTAYQCHECSGTSMGSAV-------GVAXXXXXXXXXXXAVVAADLVRVVDGDDSIKDA--RTLKGRLSRFHAFVVTAFPLTTV--KIVVVAWQIITQFGAIAGFVYPEEYQDFLNALTPVNLDIGFILSYSCVVITDFFDRLLIATIGPVVVLALLALTFVVGRKRNIDSEAAVRAVKNKHLSAALFVMFFIYSSVSFTVFQTFVCDTLDDGVSYLRADYSLTCDTPRYGAFRGYAAVMVCVYPIGIPATFAWLLGSNRQ---------DLQKADRDRLANLQPLGDLWEAYKPSRYYYEIIEYVRRIVLTGVAVFVLPGSSAQMAVVLLLAVVFLFISESLSPFTKKIDMALYRWGNGVVLASIYVALLLKVNVSEEGSETLSAFVVVLILANVCMAITLVVQSF 1024
BLAST of mRNA_H-elongata_contig1746.4539.1 vs. uniprot
Match: D7G301_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G301_ECTSI) HSP 1 Score: 181 bits (458), Expect = 4.070e-43 Identity = 122/421 (28.98%), Postives = 198/421 (47.03%), Query Frame = 3
Query: 3 STTVYECPNSDACSGG-SDVSSYCSEGFIGPLCAVCDYDYYPSGSYECATXXXXXXXXXXXXXIIFGGVIGLFLVFLMKGASVIEEKAREALEDDDDNEEAQAKVLGALNARIYQFVKQWKETLVVRLKIMVTHFQVVTTFPTVLDVQWPDAFSRYADKFSIISLDFWGILTQTCFFSSDFLKQLVFTTLLPFAIVLILVLNYMRGVRKAGSDPIKKRAAWDTMAAGVLLTAFFFYIITSTLVLKAFDCKEFEDGSSYLKADYSINCDSITYTFIYRYGIAMAIIYPAGIPATYLIALYLRRRHINPNPLDPDTSMMTREADPTIQKTKFLWGTYRPSVYFYEVWECVRKLFLTGLLVYFKEGTSTQVVVAILLTLAGLRVLSGLRPYQREDENNLAEASIWVTFITLFVGLIIKAGVAED 1262
S V+ C NSDAC GG + + YC +G+ GP CAVC Y ++ C G I L V + V A A+ V + AR+ Q++ +KI++ +Q++T F +V +V +PD + R+ D + + D +L+ C F DF +L+ +T+ P +L L Y V + W+ + VLL F Y S + KAF C+E EDG++YL+ADY+I+CDS + Y M ++Y GIPA Y L+ R + + D RE T LW Y+PSV++YEV EC R++ L G++V+ T+ Q+ + +++ A + V GL P+ + + L V F+++++ L++K V+ +
Sbjct: 813 SEEVFACYNSDACLGGVTGRAGYCLKGYEGPYCAVCSDGYTTELAFACTRCSGG------------AGRIALAAVLAVVVLCVAFAVASYAMSG------RVGDVRSGVVARLGQYIPLQS------VKIVIVAWQILTQFTSVANVTYPDVYKRFLDGLDVFNFDLSWVLSAGCIFDIDFHDRLLASTVSPVIGLLFLAGTYAAAVSMNRGKAESLQVIWNKHVSLVLLLTFLIYSSVSATLFKAFVCEELEDGTNYLRADYTIDCDSSKHKAFQVYAGFMVVVYVVGIPALYAFLLFRDRHVLKDHHAD-------REQTARTTSTSDLWKPYKPSVFYYEVIECGRRVLLAGVVVFIFPNTAAQIAITLMMAFAFVMVSEGLAPFASKWDAWLNRTGHTVVFVSMYIALLLKVDVSGE 1202
BLAST of mRNA_H-elongata_contig1746.4539.1 vs. uniprot
Match: A0A6H5K0E9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0E9_9PHAE) HSP 1 Score: 181 bits (458), Expect = 4.760e-43 Identity = 122/447 (27.29%), Postives = 209/447 (46.76%), Query Frame = 3
Query: 3 STTVYECPNSDACSGG-SDVSSYCSEGFIGPLCAVCDYDYYPSGSYECATXXXXXXXXXXXXXIIFGGVIGLFLVFLMKGASVIEEKAREALEDDDDNEEAQAKVLGALNARIYQFVKQWKETLVVRLKIMVTHFQVVTTFPTVLDVQWPDAFSRYADKFSIISLDFWGILTQTCFFSSDFLKQLVFTTLLPFAIVLILVLNYMRGVRKAGSDPIKKRAAWDTMAAGVLLTAFFFYIITSTLVLKAFDCKEFEDGSSYLKADYSINCDSITYTFIYRYGIAMAIIYPAGIPATYLIALYLRRRHINPNPLDPDTSMMTREADPTIQKTKFLWGTYRPSVYFYEVWECVRKLFLTGLLVYFKEGTSTQVVVAILLTLAGLRVLSGLRPYQREDENNLAEASIWVTFITLFVGLIIKAGVAEDDGYDSVALGVILTFMNMSLLVLAVFQ 1340
ST V C ++DAC GG + S YC EG+ GP C +C Y S+ C+ I V+ L +VFL +V+ + E G + + +++ LKI++ +Q++T F +V +V +PD + D + + D +L+ C +F +L+ +T+ P +L+L Y R +P K W+ VLL FF Y S+ + +AF C + + YL+ADYSI C+S + I Y M +IY GIPA Y L+ R + DPD RE P ++ LW Y+P+V++YEV EC R++ L G++V+ T+ Q+ V +L+ A + GL PY + ++ V F++++V L++K V+++ +L +++ +++ + +
Sbjct: 1067 STEVLACYHADACLGGVTGASGYCEEGYEGPYCGICSDGYTEQLSFACSKCSENSAGG-----IAVAVVLALLIVFL--AVAVVSYVT---------SGEVGMGRKGGIVELVTRYIPLQS------LKIVIVSWQILTQFTSVANVTYPDVYQDLLDVLDVFNFDLSWLLSAGCVVDMNFHGRLLVSTISPIVALLLLACTYAAAARINRGEPEKLNIIWNKHVTVVLLLTFFVYSSVSSTLFRAFACDDLDYSKDYLRADYSIECNSSEHRGIQVYAGFMIVIYTVGIPALYAELLFKSRDVLKDE--DPD-----REEPPRVKSISNLWEPYKPAVFYYEVIECFRRVLLAGVVVFIYPNTAAQIAVTLLIAFAFALLSEGLAPYASRWDTWISRVGHIVVFLSMYVALLLKVDVSDERASSQEVFESVLVAVHVCMILFVLVE 1484
BLAST of mRNA_H-elongata_contig1746.4539.1 vs. uniprot
Match: D7FTT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTT9_ECTSI) HSP 1 Score: 177 bits (450), Expect = 5.570e-42 Identity = 128/450 (28.44%), Postives = 211/450 (46.89%), Query Frame = 3
Query: 3 STTVYECPNSDACSGGSDVSSYCSEGFIGPLCAVCDYDYYPSGSYECATXXXXXXXXXXXXXIIFGGVIGLF-----LVFLMKGASVIEEKAREALEDDDDNEEAQAKVLGALNARIYQFVKQWKETLVVRLKIMVTHFQVVTTFPTVLDVQWPDAFSRYADKFSIISLDFWGILTQTCFFSSDFLKQLVFTTLLPFAIVLILVLNYMRGVRKAGSDPIKKRAAWDTMAAGVLLTAFFFYIITSTLVLKAFDCKEFEDGSSYLKADYSINCDSITYTFIYRYGIAMAIIYPAGIPATYLIALYLRRRHINPNPLDPDTSMMTREADPTIQKTKFLWGTYRPSVYFYEVWECVRKLFLTGLLVYFKEGTSTQVVVAILLTLAGLRVLSGLRPYQREDENNLAEASIWVTFITLFVGLIIKAGVAED-DGYDSVALGVI-LTFMNMSLLVLA 1331
ST + EC + AC GGS V +YC+EG+IGP CAVC Y P S C + ++F IG + + + SV+E + + + A AR+ Q V + +KI+V +Q+VT + V V++P A+ + +++LD IL+ C + ++F +L+ T+ P ++ +L Y+ R+ R + L F Y S + + F C +DG+SYL+ADYS+ CD+ +T Y ++YP GIP + L+ R + RE+ ++ LW Y+PS Y+YEV EC R++ LTG V+ +S QV + +LL + V L P+ R E L A +V F ++++ L+++ V+++ D V GVI + + M L+V+A
Sbjct: 604 STDIRECFHKQACEGGSAVGTYCAEGYIGPYCAVCSAGYSPGYSRTCKSCMGDSKKSA----LVFAAAIGALALAAVVALVSRLVSVVEVGPPQQ-----QGSKGWRRTCSAWQARVRQTVP------LTAVKIVVVVWQIVTQYSDVAGVEYPGAYQDFLSVVDVVNLDLGFILSFACVYDTNFYDRLLMATIGPVLVLGLLGCTYLVARRRNRHCEEAMRDVQRRHLSVTLFVMFVIYAAVSYTIFETFVCDTLDDGNSYLRADYSLTCDTPLHTAYRVYAGLAVLVYPVGIPCVFGWWLFKNRHELKQE---------DRESQAELRPAADLWEPYKPSAYYYEVVECFRRIALTGFAVFIYPDSSAQVAIVLLLAAVFMVVSEILSPFARPVEMWLYRAGHYVVFASMYLALLLRVDVSDERDQSQEVFSGVIVIAHVAMFLVVVA 1029
BLAST of mRNA_H-elongata_contig1746.4539.1 vs. uniprot
Match: D8LRF9_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRF9_ECTSI) HSP 1 Score: 176 bits (445), Expect = 2.230e-41 Identity = 144/506 (28.46%), Postives = 232/506 (45.85%), Query Frame = 3
Query: 6 TTVYECPNSDACSGGSDVSS---YCSEGFIGPLCAVCDYDY---YPSGSYECATXXXXXXXXXXXXXIIFGGVIGLFLVFLMKGASVIEEKAREALEDDDDNEEAQAKVLGALNARIYQFVKQWKETLVVRLKIMVTHFQVVTTFPTVLDVQWPDAFSRYADKFSIISLDFWGILTQTCFFSSDFLKQLVFTTLLPFAIVLILVLNYM----RGVRK--------------------------------------AGS--------DPIKKRAAWDTMAAGVLLTA-FFFYIITSTLVLKAFDCKEFED-GSSYLKADYSINCDSITYTFIYRYGIAMAIIYPAGIPATYLIALYLRRRHINPNP-LDPDTSMMTREADPTIQKTKFLWGTYRPSVYFYEVWECVRKLFLTGLLVYFKEGTSTQVVVAILLTLAGLRVLSGLRPYQREDENNLAEASIWVTFITLFVGLIIKAGVAEDDGYDSVALGVILTFMNMSLLVLAVFQIF 1346
TT+ +C +AC GGS +S YC+ G+ GP CAVC Y +G +EC + GG++ L +L+ +I+E + + L N+R+ V + KE + +LKI + FQ++T + + V +P AF++ +++LD +L+ +C FS +F +LV TTL+P A+ L L +M R VR AGS ++ + GVL+TA F Y ST+V + F C ++ G+++L+ADYS+ C + + Y M ++YP GIP Y L+ R I P L S R D I T LW YRPS Y+YEV EC R+L LTG LV+ ++ Q VA +L++A + + LRP+ +++ L + F+++FV L+ K +A+ D + +L ++++L ++A Q F
Sbjct: 1106 TTIRKCLYEEACEGGSAISQSDDYCAVGYQGPYCAVCLSGYAGGISNGCHECTEAFRAWMYVLA----VLGGLLALACAWLLF-RYLIQEPV------------SPGRFLSCRNSRM---VSKVKELPLHKLKIPIVVFQILTQYADITTVDFPPAFTKLLGFMDVLNLDMGWVLSASCIFSPNFYGRLVLTTLVPIALGLALCCTFMYAKSRTVRAGLPKANEGSSMRSVNTVVSXXXXXXXXXXXXXXPATVVAGSRSGHGIMMSEARQMSVVKRRHVGVLVTASFLVYSTVSTIVFQTFACDTLDELGTTFLRADYSLECYTPEHKLYRGYAGIMILVYPIGIPLLYAWLLFRHRHRIYPKQALRDGVSPERRLVDKKIAHTVLLWQAYRPSRYYYEVIECARRLLLTGCLVFILPNSAGQAGVACVLSVATVALFITLRPFADSNDDRLYILGAILIFLSMFVSLVPKIEIADGDDQSETVVSWLLIVLSLTLWLMAFMQCF 1591 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1746.4539.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig1746.4539.1 >prot_H-elongata_contig1746.4539.1 ID=prot_H-elongata_contig1746.4539.1|Name=mRNA_H-elongata_contig1746.4539.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=465bp MKGASVIEEKAREALEDDDDNEEAQAKVLGALNARIYQFVKQWKETLVVRback to top mRNA from alignment at H-elongata_contig1746:1375..7950+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig1746.4539.1 ID=mRNA_H-elongata_contig1746.4539.1|Name=mRNA_H-elongata_contig1746.4539.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=6576bp|location=Sequence derived from alignment at H-elongata_contig1746:1375..7950+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig1746:1375..7950+ >mRNA_H-elongata_contig1746.4539.1 ID=mRNA_H-elongata_contig1746.4539.1|Name=mRNA_H-elongata_contig1746.4539.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2790bp|location=Sequence derived from alignment at H-elongata_contig1746:1375..7950+ (Himanthalia elongata Himel1 dioecious)back to top |