mRNA_H-elongata_contig174546.4537.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig174546.4537.1
Unique NamemRNA_H-elongata_contig174546.4537.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig174546.4537.1 vs. uniprot
Match: UPI001AD8DC38 (uncharacterized protein LOC121052952 isoform X1 n=1 Tax=Rosa chinensis TaxID=74649 RepID=UPI001AD8DC38)

HSP 1 Score: 57.4 bits (137), Expect = 9.960e-7
Identity = 33/85 (38.82%), Postives = 51/85 (60.00%), Query Frame = 1 
Query:  205 VGEEPWILDSGATGHFTHDGSRLAVYAE--CSRVLRGARGEAFPIVGTGVLTLCVRAGGGVVRVKLNDVAHAPGLFHHLLSLRRI 453
            VGE+ WI+DSGA+ H T+D S     +    S+V   A GEAFP++GTG + L          ++L++V + P L HHL+S+ ++
Sbjct:  348 VGEDTWIIDSGASDHMTYDKSYFTHLSPPPVSKVTN-ANGEAFPVLGTGSVRL-------TPTLELHNVLYVPALSHHLISVPQL 424
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BLAST of mRNA_H-elongata_contig174546.4537.1 vs. uniprot
Match: A0A5D3DSP6_CUCME (Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 n=2 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5D3DSP6_CUCME)

HSP 1 Score: 55.1 bits (131), Expect = 7.190e-6
Identity = 42/141 (29.79%), Postives = 61/141 (43.26%), Query Frame = 1 
Query:   40 CKKEEHNTVIAVGQVEE-LAPGDESPVSSDVELEAYTALTESKCLVSVGVESEHLRVGEEPWILDSGATGHFTHDGSRLAVYAECS--RVLRGARGEAFPIVGTGVLTLCVRAGGGVVRVKLNDVAHAPGLFHHLLSLRRI 453
            CKK+ H          + + P      S  + + A + +++S  L+SV         G  PWILDSGAT HFT        Y  C+    ++ A G   PI G G + L            L +V H P L ++LLS+ +I
Sbjct:  209 CKKQRHTKDPETANTSQPIGPTASQTSSPTLSVIAQSGMSQSFGLISVD--------GTNPWILDSGATDHFTSFSEHFVTYTSCAGNEKIQIADGSLAPIAGKGQIVL-------FDGFSLQNVLHVPKLSYNLLSISKI 334
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig174546.4537.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
UPI001AD8DC389.960e-738.82uncharacterized protein LOC121052952 isoform X1 n=... [more]
A0A5D3DSP6_CUCME7.190e-629.79Cysteine-rich RLK (RECEPTOR-like protein kinase) 8... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig174546contigH-elongata_contig174546:777..1241 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score60.5
Seed ortholog evalue8.2e-07
Seed eggNOG ortholog3659.XP_004145411.1
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs37SCF@33090,3GAWJ@35493,4JPX1@91835,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelfabids
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size465
Cds size465
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930012.3515878-CDS-H-elongata_contig174546:776..12411622930012.3515878-CDS-H-elongata_contig174546:776..1241Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig174546 777..1241 +
1691679245.7113285-CDS-H-elongata_contig174546:776..12411691679245.7113285-CDS-H-elongata_contig174546:776..1241Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig174546 777..1241 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig174546.4537.1prot_H-elongata_contig174546.4537.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig174546 777..1241 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig174546.4537.1

>prot_H-elongata_contig174546.4537.1 ID=prot_H-elongata_contig174546.4537.1|Name=mRNA_H-elongata_contig174546.4537.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=155bp
CQGCGKKGHQVRQCKKEEHNTVIAVGQVEELAPGDESPVSSDVELEAYTA
LTESKCLVSVGVESEHLRVGEEPWILDSGATGHFTHDGSRLAVYAECSRV
LRGARGEAFPIVGTGVLTLCVRAGGGVVRVKLNDVAHAPGLFHHLLSLRR
IADAG
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mRNA from alignment at H-elongata_contig174546:777..1241+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig174546.4537.1 ID=mRNA_H-elongata_contig174546.4537.1|Name=mRNA_H-elongata_contig174546.4537.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=465bp|location=Sequence derived from alignment at H-elongata_contig174546:777..1241+ (Himanthalia elongata Himel1 dioecious)
TGTCAAGGGTGCGGCAAGAAGGGGCACCAGGTCCGCCAGTGCAAGAAAGA
GGAGCACAACACGGTAATCGCGGTGGGCCAAGTCGAGGAGCTTGCACCAG
GAGACGAGTCACCGGTCAGCTCAGACGTCGAGCTGGAGGCGTACACTGCC
CTCACCGAAAGCAAGTGCCTGGTTTCTGTTGGGGTGGAAAGCGAACATTT
GCGCGTGGGGGAAGAACCCTGGATACTGGATTCGGGGGCTACAGGTCATT
TTACGCATGACGGCAGCAGACTTGCCGTCTACGCGGAGTGCAGCAGAGTG
TTGCGTGGCGCGAGAGGAGAAGCTTTCCCGATCGTAGGTACTGGAGTTTT
GACTTTGTGCGTTCGAGCTGGAGGGGGGGTGGTCCGCGTCAAGCTAAACG
ACGTTGCACACGCGCCAGGCCTCTTCCACCACCTGTTGTCCTTGCGGCGG
ATTGCCGATGCTGGC
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Coding sequence (CDS) from alignment at H-elongata_contig174546:777..1241+

>mRNA_H-elongata_contig174546.4537.1 ID=mRNA_H-elongata_contig174546.4537.1|Name=mRNA_H-elongata_contig174546.4537.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=930bp|location=Sequence derived from alignment at H-elongata_contig174546:777..1241+ (Himanthalia elongata Himel1 dioecious)
TGTCAAGGGTGCGGCAAGAAGGGGCACCAGGTCCGCCAGTGCAAGAAAGA
GGAGCACAACACGGTAATCGCGGTGGGCCAAGTCGAGGAGCTTGCACCAG
GAGACGAGTCACCGGTCAGCTCAGACGTCGAGCTGGAGGCGTACACTGCC
CTCACCGAAAGCAAGTGCCTGGTTTCTGTTGGGGTGGAAAGCGAACATTT
GCGCGTGGGGGAAGAACCCTGGATACTGGATTCGGGGGCTACAGGTCATT
TTACGCATGACGGCAGCAGACTTGCCGTCTACGCGGAGTGCAGCAGAGTG
TTGCGTGGCGCGAGAGGAGAAGCTTTCCCGATCGTAGGTACTGGAGTTTT
GACTTTGTGCGTTCGAGCTGGAGGGGGGGTGGTCCGCGTCAAGCTAAACG
ACGTTGCACACGCGCCAGGCCTCTTCCACCACCTGTTGTCCTTGCGGCGG
ATTGCCGATGCTGGCTGTCAAGGGTGCGGCAAGAAGGGGCACCAGGTCCG
CCAGTGCAAGAAAGAGGAGCACAACACGGTAATCGCGGTGGGCCAAGTCG
AGGAGCTTGCACCAGGAGACGAGTCACCGGTCAGCTCAGACGTCGAGCTG
GAGGCGTACACTGCCCTCACCGAAAGCAAGTGCCTGGTTTCTGTTGGGGT
GGAAAGCGAACATTTGCGCGTGGGGGAAGAACCCTGGATACTGGATTCGG
GGGCTACAGGTCATTTTACGCATGACGGCAGCAGACTTGCCGTCTACGCG
GAGTGCAGCAGAGTGTTGCGTGGCGCGAGAGGAGAAGCTTTCCCGATCGT
AGGTACTGGAGTTTTGACTTTGTGCGTTCGAGCTGGAGGGGGGGTGGTCC
GCGTCAAGCTAAACGACGTTGCACACGCGCCAGGCCTCTTCCACCACCTG
TTGTCCTTGCGGCGGATTGCCGATGCTGGC
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