mRNA_H-elongata_contig174301.4530.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig174301.4530.1
Unique NamemRNA_H-elongata_contig174301.4530.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig174301.4530.1 vs. uniprot
Match: A0A835Z8N4_9STRA (Phosphatase 2C-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8N4_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 7.430e-21
Identity = 44/64 (68.75%), Postives = 51/64 (79.69%), Query Frame = 1 
Query:    1 GHGRDVGRLAAHVVQAFMQEWLTCRWSEVKANPAEAFRTLFREAHESMLMSFREHLQALGWTLK 192
            GHGRDVGRLAA  V+ FMQ+WLT  WS V ANPAEAFR +F EAH SML +F++HL A GWT+K
Sbjct:   41 GHGRDVGRLAAVHVKGFMQDWLTRYWSAVIANPAEAFRIMFAEAHASMLTAFQQHLIAEGWTVK 104
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BLAST of mRNA_H-elongata_contig174301.4530.1 vs. uniprot
Match: D7FNA2_ECTSI (PPM-type phosphatase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNA2_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 8.960e-19
Identity = 41/57 (71.93%), Postives = 44/57 (77.19%), Query Frame = 1 
Query:    1 GHGRDVGRLAAHVVQAFMQEWLTCRWSEVKANPAEAFRTLFREAHESMLMSFREHLQ 171
            GHGRDVGRLAAHVVQ FMQ+WL+ RW EVK NPAEAFRTLFRE +   LM  R   Q
Sbjct:  147 GHGRDVGRLAAHVVQEFMQDWLSRRWGEVKENPAEAFRTLFREDNGGYLMKRRSMTQ 203
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig174301.4530.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835Z8N4_9STRA7.430e-2168.75Phosphatase 2C-like domain-containing protein n=1 ... [more]
D7FNA2_ECTSI8.960e-1971.93PPM-type phosphatase domain-containing protein n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig174301contigH-elongata_contig174301:270..1178 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein phosphatase 2C (PP2C)-like domain
Ec32 orthologEc-15_003530.1
Exons2
Model size192
Cds size192
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930011.3808014-CDS-H-elongata_contig174301:269..3981622930011.3808014-CDS-H-elongata_contig174301:269..398Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig174301 270..398 +
1691679245.277021-CDS-H-elongata_contig174301:269..3981691679245.277021-CDS-H-elongata_contig174301:269..398Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig174301 270..398 +
1622930011.3989305-CDS-H-elongata_contig174301:1115..11781622930011.3989305-CDS-H-elongata_contig174301:1115..1178Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig174301 1116..1178 +
1691679245.2855763-CDS-H-elongata_contig174301:1115..11781691679245.2855763-CDS-H-elongata_contig174301:1115..1178Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig174301 1116..1178 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig174301.4530.1prot_H-elongata_contig174301.4530.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig174301 270..1178 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig174301.4530.1

>prot_H-elongata_contig174301.4530.1 ID=prot_H-elongata_contig174301.4530.1|Name=mRNA_H-elongata_contig174301.4530.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=64bp
GHGRDVGRLAAHVVQAFMQEWLTCRWSEVKANPAEAFRTLFREAHESMLM
SFREHLQALGWTLK
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mRNA from alignment at H-elongata_contig174301:270..1178+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig174301.4530.1 ID=mRNA_H-elongata_contig174301.4530.1|Name=mRNA_H-elongata_contig174301.4530.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=909bp|location=Sequence derived from alignment at H-elongata_contig174301:270..1178+ (Himanthalia elongata Himel1 dioecious)
GGTCACGGACGAGACGTGGGGCGTCTGGCGGCCCACGTGGTTCAGGCGTT
TATGCAAGAGTGGCTCACCTGCCGTTGGTCGGAGGTTAAGGCAAACCCCG
CCGAGGCGTTTCGAACGCTCTTCCGAGAGGTGAATGGGAGCGCTCAGATC
CGAGACGGAAGGACGTCCCCATGGAGGCATTTTTATGGGGGGGGTGAAGG
GTAAATGGAACCGTGAGCATTAAGGAATAAAGCTGTGGCAGTGTATGGTG
CTGCTGTGCGGCGCAATGCTTGCCTCTCATGTGATTTTGGTCGGGGCTTA
TGTTCGTTTTCCTTTATTTCCCCCTTTTTTTCTCTCGCTTGTCTTGTAAG
GCCGGGTCTTATCGAAATACAAAAATTAAAAATTCCAGCCGATATAAATT
AAAATTGGGCTCTGATTGGTCGAAAGCTAAATGACGCCTAGCCTTCGTCC
AATCAGAGACCGATTTAAATATAAAACGACTGGAATTTAAAATTTAGTAA
CCCCGTTATAATACCCGCCCTAATTGTCCCTTTTTTGGCTGTTTGTTGTT
CCTTTTTCCCCCCTGTAATGCTTCTTTATTCAGTGTGTCTTTTTTTTCTC
GGCAACCACATGTTGGAGATACAAAGAATGTCCTTCATTACAAAAAAACA
CGCTTCGCTTGCGGTGCAACATTTCGAATATTTCCTCATTTTCTTTTCTA
TTGCTGACAAGACTCTTGAACATATCCTACTGTTTGTTTTGTCCATAGAA
GAGATTCTTCGTCCATTTTTTAAAATATATTTATTGATTTGTTTTGCATC
TGAATATGTGTTTTGCATCTGAATCGATGTGTGTGGATCAAAACAGGCTC
ACGAATCGATGCTCATGTCTTTTCGGGAACACCTTCAAGCGCTCGGCTGG
ACGCTGAAG
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Coding sequence (CDS) from alignment at H-elongata_contig174301:270..1178+

>mRNA_H-elongata_contig174301.4530.1 ID=mRNA_H-elongata_contig174301.4530.1|Name=mRNA_H-elongata_contig174301.4530.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=384bp|location=Sequence derived from alignment at H-elongata_contig174301:270..1178+ (Himanthalia elongata Himel1 dioecious)
GGTCACGGACGAGACGTGGGGCGTCTGGCGGCCCACGTGGTTCAGGCGTT
TATGCAAGAGTGGCTCACCTGCCGTTGGTCGGAGGTTAAGGCAAACCCCG
CCGAGGCGTTTCGAACGCTCTTCCGAGAGGGTCACGGACGAGACGTGGGG
CGTCTGGCGGCCCACGTGGTTCAGGCGTTTATGCAAGAGTGGCTCACCTG
CCGTTGGTCGGAGGTTAAGGCAAACCCCGCCGAGGCGTTTCGAACGCTCT
TCCGAGAGGCTCACGAATCGATGCTCATGTCTTTTCGGGAACACCTTCAA
GCGCTCGGCTGGACGCTGAAGGCTCACGAATCGATGCTCATGTCTTTTCG
GGAACACCTTCAAGCGCTCGGCTGGACGCTGAAG
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