mRNA_H-elongata_contig174019.4519.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig174019.4519.1
Unique NamemRNA_H-elongata_contig174019.4519.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig174019.4519.1 vs. uniprot
Match: D7FJL3_ECTSI (Coronin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJL3_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 2.380e-14
Identity = 31/47 (65.96%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:    1 VRGLEWDPFYPENLATAGTDGLVKLWRIPENGLEEDLIDPIVSMSTC 141
            VRGLEWDPF P NLAT G DG+VK+W IP  GL+EDL+ P+VS++T 
Sbjct:   10 VRGLEWDPFCPNNLATGGGDGMVKVWSIPPEGLKEDLVAPLVSINTA 56
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BLAST of mRNA_H-elongata_contig174019.4519.1 vs. uniprot
Match: A0A0A0A880_CHAVO (Coronin (Fragment) n=1 Tax=Charadrius vociferus TaxID=50402 RepID=A0A0A0A880_CHAVO)

HSP 1 Score: 56.2 bits (134), Expect = 7.510e-8
Identity = 23/40 (57.50%), Postives = 27/40 (67.50%), Query Frame = 1 
Query:    1 VRGLEWDPFYPENLATAGTDGLVKLWRIPENGLEEDLIDP 120
            V  L WDPF P  LA AG D  ++LWRIPE GL+E L +P
Sbjct:   96 VADLSWDPFDPRRLAVAGEDAKIRLWRIPEGGLQETLCEP 135
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BLAST of mRNA_H-elongata_contig174019.4519.1 vs. uniprot
Match: A0A7L2S006_9PASS (Coronin (Fragment) n=1 Tax=Neodrepanis coruscans TaxID=254563 RepID=A0A7L2S006_9PASS)

HSP 1 Score: 56.2 bits (134), Expect = 7.620e-8
Identity = 23/40 (57.50%), Postives = 28/40 (70.00%), Query Frame = 1 
Query:    1 VRGLEWDPFYPENLATAGTDGLVKLWRIPENGLEEDLIDP 120
            V  L WDPF P+ LA AG D  ++LWRIPE GL+E L +P
Sbjct:  276 VADLSWDPFDPQRLAVAGEDAKIRLWRIPEGGLQETLQEP 315
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BLAST of mRNA_H-elongata_contig174019.4519.1 vs. uniprot
Match: A0A7L0I5Q2_AREIN (Coronin (Fragment) n=2 Tax=Charadriiformes TaxID=8906 RepID=A0A7L0I5Q2_AREIN)

HSP 1 Score: 56.2 bits (134), Expect = 7.680e-8
Identity = 23/40 (57.50%), Postives = 27/40 (67.50%), Query Frame = 1 
Query:    1 VRGLEWDPFYPENLATAGTDGLVKLWRIPENGLEEDLIDP 120
            V  L WDPF P  LA AG D  ++LWRIPE GL+E L +P
Sbjct:  267 VADLSWDPFDPRRLAVAGEDAKIRLWRIPEGGLQETLCEP 306
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BLAST of mRNA_H-elongata_contig174019.4519.1 vs. uniprot
Match: A0A7L1D828_9PASS (Coronin (Fragment) n=3 Tax=Neognathae TaxID=8825 RepID=A0A7L1D828_9PASS)

HSP 1 Score: 56.2 bits (134), Expect = 7.750e-8
Identity = 23/40 (57.50%), Postives = 28/40 (70.00%), Query Frame = 1 
Query:    1 VRGLEWDPFYPENLATAGTDGLVKLWRIPENGLEEDLIDP 120
            V  L WDPF P+ LA AG D  ++LWRIPE GL+E L +P
Sbjct:  269 VADLSWDPFDPQRLAVAGEDAKIRLWRIPEGGLQETLQEP 308
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BLAST of mRNA_H-elongata_contig174019.4519.1 vs. uniprot
Match: A0A7L1XIV5_9AVES (Coronin (Fragment) n=3 Tax=Neognathae TaxID=8825 RepID=A0A7L1XIV5_9AVES)

HSP 1 Score: 56.2 bits (134), Expect = 7.750e-8
Identity = 23/40 (57.50%), Postives = 27/40 (67.50%), Query Frame = 1 
Query:    1 VRGLEWDPFYPENLATAGTDGLVKLWRIPENGLEEDLIDP 120
            V  L WDPF P  LA AG D  ++LWRIPE GL+E L +P
Sbjct:  274 VADLSWDPFDPRRLAVAGEDAKIRLWRIPEGGLQETLCEP 313
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BLAST of mRNA_H-elongata_contig174019.4519.1 vs. uniprot
Match: A0A7L0IH34_PIPCL (Coronin (Fragment) n=3 Tax=Passeriformes TaxID=9126 RepID=A0A7L0IH34_PIPCL)

HSP 1 Score: 56.2 bits (134), Expect = 7.750e-8
Identity = 23/40 (57.50%), Postives = 28/40 (70.00%), Query Frame = 1 
Query:    1 VRGLEWDPFYPENLATAGTDGLVKLWRIPENGLEEDLIDP 120
            V  L WDPF P+ LA AG D  ++LWRIPE GL+E L +P
Sbjct:  280 VADLSWDPFDPQRLAVAGEDAKIRLWRIPEGGLQETLQEP 319
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BLAST of mRNA_H-elongata_contig174019.4519.1 vs. uniprot
Match: UPI000521506F (coronin-7-like n=1 Tax=Charadrius vociferus TaxID=50402 RepID=UPI000521506F)

HSP 1 Score: 56.2 bits (134), Expect = 7.760e-8
Identity = 23/40 (57.50%), Postives = 27/40 (67.50%), Query Frame = 1 
Query:    1 VRGLEWDPFYPENLATAGTDGLVKLWRIPENGLEEDLIDP 120
            V  L WDPF P  LA AG D  ++LWRIPE GL+E L +P
Sbjct:  103 VADLSWDPFDPRRLAVAGEDAKIRLWRIPEGGLQETLCEP 142
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BLAST of mRNA_H-elongata_contig174019.4519.1 vs. uniprot
Match: A0A8C3PMW0_9CHAR (Coronin n=4 Tax=Neognathae TaxID=8825 RepID=A0A8C3PMW0_9CHAR)

HSP 1 Score: 56.2 bits (134), Expect = 7.780e-8
Identity = 23/40 (57.50%), Postives = 27/40 (67.50%), Query Frame = 1 
Query:    1 VRGLEWDPFYPENLATAGTDGLVKLWRIPENGLEEDLIDP 120
            V  L WDPF P  LA AG D  ++LWRIPE GL+E L +P
Sbjct:  432 VADLSWDPFDPRRLAVAGEDAKIRLWRIPEGGLQETLCEP 471
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BLAST of mRNA_H-elongata_contig174019.4519.1 vs. uniprot
Match: A0A672TXB6_STRHB (Coronin n=2 Tax=Strigops habroptila TaxID=2489341 RepID=A0A672TXB6_STRHB)

HSP 1 Score: 56.2 bits (134), Expect = 7.790e-8
Identity = 23/40 (57.50%), Postives = 28/40 (70.00%), Query Frame = 1 
Query:    1 VRGLEWDPFYPENLATAGTDGLVKLWRIPENGLEEDLIDP 120
            V  L WDPF P+ LA AG D  ++LWRIPE GL+E L +P
Sbjct:  422 VADLSWDPFDPQRLAVAGEDAKIRLWRIPEGGLQETLQEP 461
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig174019.4519.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJL3_ECTSI2.380e-1465.96Coronin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJL3... [more]
A0A0A0A880_CHAVO7.510e-857.50Coronin (Fragment) n=1 Tax=Charadrius vociferus Ta... [more]
A0A7L2S006_9PASS7.620e-857.50Coronin (Fragment) n=1 Tax=Neodrepanis coruscans T... [more]
A0A7L0I5Q2_AREIN7.680e-857.50Coronin (Fragment) n=2 Tax=Charadriiformes TaxID=8... [more]
A0A7L1D828_9PASS7.750e-857.50Coronin (Fragment) n=3 Tax=Neognathae TaxID=8825 R... [more]
A0A7L1XIV5_9AVES7.750e-857.50Coronin (Fragment) n=3 Tax=Neognathae TaxID=8825 R... [more]
A0A7L0IH34_PIPCL7.750e-857.50Coronin (Fragment) n=3 Tax=Passeriformes TaxID=912... [more]
UPI000521506F7.760e-857.50coronin-7-like n=1 Tax=Charadrius vociferus TaxID=... [more]
A0A8C3PMW0_9CHAR7.780e-857.50Coronin n=4 Tax=Neognathae TaxID=8825 RepID=A0A8C3... [more]
A0A672TXB6_STRHB7.790e-857.50Coronin n=2 Tax=Strigops habroptila TaxID=2489341 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig174019contigH-elongata_contig174019:699..857 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.9
Seed ortholog evalue6.5e-12
Seed eggNOG ortholog2880.D7FJL3
KEGG koko:K13886,ko:K18619
EggNOG free text desc.actin filament binding
EggNOG OGsCOG1985@1,KOG0303@2759
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size159
Cds size159
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930010.3974345-CDS-H-elongata_contig174019:698..8571622930010.3974345-CDS-H-elongata_contig174019:698..857Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig174019 699..857 -
1691679244.8579328-CDS-H-elongata_contig174019:698..8571691679244.8579328-CDS-H-elongata_contig174019:698..857Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig174019 699..857 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig174019.4519.1prot_H-elongata_contig174019.4519.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig174019 699..857 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig174019.4519.1

>prot_H-elongata_contig174019.4519.1 ID=prot_H-elongata_contig174019.4519.1|Name=mRNA_H-elongata_contig174019.4519.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=53bp
VRGLEWDPFYPENLATAGTDGLVKLWRIPENGLEEDLIDPIVSMSTCERR
IK*
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mRNA from alignment at H-elongata_contig174019:699..857-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig174019.4519.1 ID=mRNA_H-elongata_contig174019.4519.1|Name=mRNA_H-elongata_contig174019.4519.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=159bp|location=Sequence derived from alignment at H-elongata_contig174019:699..857- (Himanthalia elongata Himel1 dioecious)
GTCCGAGGGCTGGAGTGGGATCCATTTTATCCGGAGAACCTTGCCACAGC
TGGAACAGACGGGTTGGTCAAATTATGGCGCATTCCGGAAAACGGGCTGG
AGGAAGACTTGATCGACCCGATAGTGTCAATGAGCACGTGTGAGCGGCGA
ATCAAATAA
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Coding sequence (CDS) from alignment at H-elongata_contig174019:699..857-

>mRNA_H-elongata_contig174019.4519.1 ID=mRNA_H-elongata_contig174019.4519.1|Name=mRNA_H-elongata_contig174019.4519.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=318bp|location=Sequence derived from alignment at H-elongata_contig174019:699..857- (Himanthalia elongata Himel1 dioecious)
GTCCGAGGGCTGGAGTGGGATCCATTTTATCCGGAGAACCTTGCCACAGC
TGGAACAGACGGGTTGGTCAAATTATGGCGCATTCCGGAAAACGGGCTGG
AGGAAGACTTGATCGACCCGATAGTGTCAATGAGCACGTGTGAGCGGCGA
ATCAAATAAGTCCGAGGGCTGGAGTGGGATCCATTTTATCCGGAGAACCT
TGCCACAGCTGGAACAGACGGGTTGGTCAAATTATGGCGCATTCCGGAAA
ACGGGCTGGAGGAAGACTTGATCGACCCGATAGTGTCAATGAGCACGTGT
GAGCGGCGAATCAAATAA
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