prot_H-elongata_contig174019.4519.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig174019.4519.1
Unique Nameprot_H-elongata_contig174019.4519.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length53
Homology
BLAST of mRNA_H-elongata_contig174019.4519.1 vs. uniprot
Match: D7FJL3_ECTSI (Coronin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJL3_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 2.380e-14
Identity = 31/47 (65.96%), Postives = 38/47 (80.85%), Query Frame = 0
Query:    1 VRGLEWDPFYPENLATAGTDGLVKLWRIPENGLEEDLIDPIVSMSTC 47
            VRGLEWDPF P NLAT G DG+VK+W IP  GL+EDL+ P+VS++T 
Sbjct:   10 VRGLEWDPFCPNNLATGGGDGMVKVWSIPPEGLKEDLVAPLVSINTA 56          
BLAST of mRNA_H-elongata_contig174019.4519.1 vs. uniprot
Match: A0A0A0A880_CHAVO (Coronin (Fragment) n=1 Tax=Charadrius vociferus TaxID=50402 RepID=A0A0A0A880_CHAVO)

HSP 1 Score: 56.2 bits (134), Expect = 7.510e-8
Identity = 23/40 (57.50%), Postives = 27/40 (67.50%), Query Frame = 0
Query:    1 VRGLEWDPFYPENLATAGTDGLVKLWRIPENGLEEDLIDP 40
            V  L WDPF P  LA AG D  ++LWRIPE GL+E L +P
Sbjct:   96 VADLSWDPFDPRRLAVAGEDAKIRLWRIPEGGLQETLCEP 135          
BLAST of mRNA_H-elongata_contig174019.4519.1 vs. uniprot
Match: A0A7L2S006_9PASS (Coronin (Fragment) n=1 Tax=Neodrepanis coruscans TaxID=254563 RepID=A0A7L2S006_9PASS)

HSP 1 Score: 56.2 bits (134), Expect = 7.620e-8
Identity = 23/40 (57.50%), Postives = 28/40 (70.00%), Query Frame = 0
Query:    1 VRGLEWDPFYPENLATAGTDGLVKLWRIPENGLEEDLIDP 40
            V  L WDPF P+ LA AG D  ++LWRIPE GL+E L +P
Sbjct:  276 VADLSWDPFDPQRLAVAGEDAKIRLWRIPEGGLQETLQEP 315          
BLAST of mRNA_H-elongata_contig174019.4519.1 vs. uniprot
Match: A0A7L0I5Q2_AREIN (Coronin (Fragment) n=2 Tax=Charadriiformes TaxID=8906 RepID=A0A7L0I5Q2_AREIN)

HSP 1 Score: 56.2 bits (134), Expect = 7.680e-8
Identity = 23/40 (57.50%), Postives = 27/40 (67.50%), Query Frame = 0
Query:    1 VRGLEWDPFYPENLATAGTDGLVKLWRIPENGLEEDLIDP 40
            V  L WDPF P  LA AG D  ++LWRIPE GL+E L +P
Sbjct:  267 VADLSWDPFDPRRLAVAGEDAKIRLWRIPEGGLQETLCEP 306          
BLAST of mRNA_H-elongata_contig174019.4519.1 vs. uniprot
Match: A0A7L1D828_9PASS (Coronin (Fragment) n=3 Tax=Neognathae TaxID=8825 RepID=A0A7L1D828_9PASS)

HSP 1 Score: 56.2 bits (134), Expect = 7.750e-8
Identity = 23/40 (57.50%), Postives = 28/40 (70.00%), Query Frame = 0
Query:    1 VRGLEWDPFYPENLATAGTDGLVKLWRIPENGLEEDLIDP 40
            V  L WDPF P+ LA AG D  ++LWRIPE GL+E L +P
Sbjct:  269 VADLSWDPFDPQRLAVAGEDAKIRLWRIPEGGLQETLQEP 308          
BLAST of mRNA_H-elongata_contig174019.4519.1 vs. uniprot
Match: A0A7L1XIV5_9AVES (Coronin (Fragment) n=3 Tax=Neognathae TaxID=8825 RepID=A0A7L1XIV5_9AVES)

HSP 1 Score: 56.2 bits (134), Expect = 7.750e-8
Identity = 23/40 (57.50%), Postives = 27/40 (67.50%), Query Frame = 0
Query:    1 VRGLEWDPFYPENLATAGTDGLVKLWRIPENGLEEDLIDP 40
            V  L WDPF P  LA AG D  ++LWRIPE GL+E L +P
Sbjct:  274 VADLSWDPFDPRRLAVAGEDAKIRLWRIPEGGLQETLCEP 313          
BLAST of mRNA_H-elongata_contig174019.4519.1 vs. uniprot
Match: A0A7L0IH34_PIPCL (Coronin (Fragment) n=3 Tax=Passeriformes TaxID=9126 RepID=A0A7L0IH34_PIPCL)

HSP 1 Score: 56.2 bits (134), Expect = 7.750e-8
Identity = 23/40 (57.50%), Postives = 28/40 (70.00%), Query Frame = 0
Query:    1 VRGLEWDPFYPENLATAGTDGLVKLWRIPENGLEEDLIDP 40
            V  L WDPF P+ LA AG D  ++LWRIPE GL+E L +P
Sbjct:  280 VADLSWDPFDPQRLAVAGEDAKIRLWRIPEGGLQETLQEP 319          
BLAST of mRNA_H-elongata_contig174019.4519.1 vs. uniprot
Match: UPI000521506F (coronin-7-like n=1 Tax=Charadrius vociferus TaxID=50402 RepID=UPI000521506F)

HSP 1 Score: 56.2 bits (134), Expect = 7.760e-8
Identity = 23/40 (57.50%), Postives = 27/40 (67.50%), Query Frame = 0
Query:    1 VRGLEWDPFYPENLATAGTDGLVKLWRIPENGLEEDLIDP 40
            V  L WDPF P  LA AG D  ++LWRIPE GL+E L +P
Sbjct:  103 VADLSWDPFDPRRLAVAGEDAKIRLWRIPEGGLQETLCEP 142          
BLAST of mRNA_H-elongata_contig174019.4519.1 vs. uniprot
Match: A0A8C3PMW0_9CHAR (Coronin n=4 Tax=Neognathae TaxID=8825 RepID=A0A8C3PMW0_9CHAR)

HSP 1 Score: 56.2 bits (134), Expect = 7.780e-8
Identity = 23/40 (57.50%), Postives = 27/40 (67.50%), Query Frame = 0
Query:    1 VRGLEWDPFYPENLATAGTDGLVKLWRIPENGLEEDLIDP 40
            V  L WDPF P  LA AG D  ++LWRIPE GL+E L +P
Sbjct:  432 VADLSWDPFDPRRLAVAGEDAKIRLWRIPEGGLQETLCEP 471          
BLAST of mRNA_H-elongata_contig174019.4519.1 vs. uniprot
Match: A0A672TXB6_STRHB (Coronin n=2 Tax=Strigops habroptila TaxID=2489341 RepID=A0A672TXB6_STRHB)

HSP 1 Score: 56.2 bits (134), Expect = 7.790e-8
Identity = 23/40 (57.50%), Postives = 28/40 (70.00%), Query Frame = 0
Query:    1 VRGLEWDPFYPENLATAGTDGLVKLWRIPENGLEEDLIDP 40
            V  L WDPF P+ LA AG D  ++LWRIPE GL+E L +P
Sbjct:  422 VADLSWDPFDPQRLAVAGEDAKIRLWRIPEGGLQETLQEP 461          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig174019.4519.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJL3_ECTSI2.380e-1465.96Coronin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJL3... [more]
A0A0A0A880_CHAVO7.510e-857.50Coronin (Fragment) n=1 Tax=Charadrius vociferus Ta... [more]
A0A7L2S006_9PASS7.620e-857.50Coronin (Fragment) n=1 Tax=Neodrepanis coruscans T... [more]
A0A7L0I5Q2_AREIN7.680e-857.50Coronin (Fragment) n=2 Tax=Charadriiformes TaxID=8... [more]
A0A7L1D828_9PASS7.750e-857.50Coronin (Fragment) n=3 Tax=Neognathae TaxID=8825 R... [more]
A0A7L1XIV5_9AVES7.750e-857.50Coronin (Fragment) n=3 Tax=Neognathae TaxID=8825 R... [more]
A0A7L0IH34_PIPCL7.750e-857.50Coronin (Fragment) n=3 Tax=Passeriformes TaxID=912... [more]
UPI000521506F7.760e-857.50coronin-7-like n=1 Tax=Charadrius vociferus TaxID=... [more]
A0A8C3PMW0_9CHAR7.780e-857.50Coronin n=4 Tax=Neognathae TaxID=8825 RepID=A0A8C3... [more]
A0A672TXB6_STRHB7.790e-857.50Coronin n=2 Tax=Strigops habroptila TaxID=2489341 ... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 1..52
e-value: 1.6E-8
score: 35.7
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 1..28
score: 9.205
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 1..36
score: 9.019
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 1..33

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig174019contigH-elongata_contig174019:699..857 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig174019.4519.1mRNA_H-elongata_contig174019.4519.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig174019 699..857 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig174019.4519.1 ID=prot_H-elongata_contig174019.4519.1|Name=mRNA_H-elongata_contig174019.4519.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=53bp
VRGLEWDPFYPENLATAGTDGLVKLWRIPENGLEEDLIDPIVSMSTCERR
IK*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR001680WD40_repeat
IPR017986WD40_repeat_dom
IPR036322WD40_repeat_dom_sf