mRNA_H-elongata_contig172885.4474.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig172885.4474.1
Unique NamemRNA_H-elongata_contig172885.4474.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig172885.4474.1 vs. uniprot
Match: X0XRB1_9ZZZZ (Tr-type G domain-containing protein (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=X0XRB1_9ZZZZ)

HSP 1 Score: 77.8 bits (190), Expect = 5.220e-18
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = 1 
Query:    1 MAREKFERTKPHVNIGTIGHVDHGKTTLTAAITATLALG 117
            MAREKFERTKPHVNIGTIGHVDHGKTTLTAAITATL+LG
Sbjct:    1 MAREKFERTKPHVNIGTIGHVDHGKTTLTAAITATLSLG 39
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BLAST of mRNA_H-elongata_contig172885.4474.1 vs. uniprot
Match: A0A7S2YC73_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YC73_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.490e-17
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 1 
Query:    1 MAREKFERTKPHVNIGTIGHVDHGKTTLTAAITATLALG 117
            MAREKFERTKPHVNIGTIGHVDHGKTTLTAAITATLALG
Sbjct:    1 MAREKFERTKPHVNIGTIGHVDHGKTTLTAAITATLALG 39
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BLAST of mRNA_H-elongata_contig172885.4474.1 vs. uniprot
Match: A0A3C1LSQ6_9SPIR (Elongation factor Tu (Fragment) n=1 Tax=Sphaerochaeta sp. TaxID=1972642 RepID=A0A3C1LSQ6_9SPIR)

HSP 1 Score: 73.2 bits (178), Expect = 2.260e-16
Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = 1 
Query:    1 MAREKFERTKPHVNIGTIGHVDHGKTTLTAAITATLAL 114
            MA+EKFERTKPHVN+GTIGHVDHGKTTLTAAIT TLAL
Sbjct:    1 MAKEKFERTKPHVNVGTIGHVDHGKTTLTAAITKTLAL 38
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BLAST of mRNA_H-elongata_contig172885.4474.1 vs. uniprot
Match: A0A7S6ZPC8_9STRA (Elongation factor Tu, chloroplastic n=2 Tax=Stramenopiles TaxID=33634 RepID=A0A7S6ZPC8_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 3.530e-16
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 1 
Query:    1 MAREKFERTKPHVNIGTIGHVDHGKTTLTAAITATLALG 117
            MAREKFERTKPHVNIGTIGHVDHGKTTLTAAITATLALG
Sbjct:    1 MAREKFERTKPHVNIGTIGHVDHGKTTLTAAITATLALG 39
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BLAST of mRNA_H-elongata_contig172885.4474.1 vs. uniprot
Match: A0A7X8E8P2_9FIRM (Elongation factor Tu (Fragment) n=1 Tax=Clostridia bacterium TaxID=2044939 RepID=A0A7X8E8P2_9FIRM)

HSP 1 Score: 72.8 bits (177), Expect = 4.760e-16
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 1 
Query:    1 MAREKFERTKPHVNIGTIGHVDHGKTTLTAAITATL 108
            MA+EKFERTKPHVNIGTIGHVDHGKTTLTAAITATL
Sbjct:    1 MAKEKFERTKPHVNIGTIGHVDHGKTTLTAAITATL 36
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BLAST of mRNA_H-elongata_contig172885.4474.1 vs. uniprot
Match: A0A7S4KCX9_9STRA (Hypothetical protein n=2 Tax=Bacillariophyta TaxID=2836 RepID=A0A7S4KCX9_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 1.060e-15
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 1 
Query:    1 MAREKFERTKPHVNIGTIGHVDHGKTTLTAAITATLAL 114
            MAREKFERTKPHVNIGTIGHVDHGKTTLTAAITATLAL
Sbjct:    1 MAREKFERTKPHVNIGTIGHVDHGKTTLTAAITATLAL 38
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BLAST of mRNA_H-elongata_contig172885.4474.1 vs. uniprot
Match: A0A6I0F3R0_9CLOT (Elongation factor Tu (Fragment) n=1 Tax=Alkaliphilus pronyensis TaxID=1482732 RepID=A0A6I0F3R0_9CLOT)

HSP 1 Score: 70.9 bits (172), Expect = 1.370e-15
Identity = 34/36 (94.44%), Postives = 35/36 (97.22%), Query Frame = 1 
Query:    1 MAREKFERTKPHVNIGTIGHVDHGKTTLTAAITATL 108
            MAR+KFERTKPHVNIGTIGHVDHGKTTLTAAIT TL
Sbjct:    1 MARQKFERTKPHVNIGTIGHVDHGKTTLTAAITITL 36
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BLAST of mRNA_H-elongata_contig172885.4474.1 vs. uniprot
Match: K1V2J9_9ZZZZ (Protein containing Protein synthesis factor, GTP-binding domain protein (Fragment) n=1 Tax=human gut metagenome TaxID=408170 RepID=K1V2J9_9ZZZZ)

HSP 1 Score: 70.5 bits (171), Expect = 2.470e-15
Identity = 34/38 (89.47%), Postives = 36/38 (94.74%), Query Frame = 1 
Query:    1 MAREKFERTKPHVNIGTIGHVDHGKTTLTAAITATLAL 114
            MA+ KFERTKPHVNIGTIGHVDHGKTTLTAAIT TLA+
Sbjct:   11 MAKAKFERTKPHVNIGTIGHVDHGKTTLTAAITKTLAM 48
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BLAST of mRNA_H-elongata_contig172885.4474.1 vs. uniprot
Match: A0A523DA63_9BACT (Elongation factor Tu (Fragment) n=2 Tax=Bacteria TaxID=2 RepID=A0A523DA63_9BACT)

HSP 1 Score: 70.1 bits (170), Expect = 3.140e-15
Identity = 33/39 (84.62%), Postives = 36/39 (92.31%), Query Frame = 1 
Query:    1 MAREKFERTKPHVNIGTIGHVDHGKTTLTAAITATLALG 117
            MA++KFERTKPHVN+GTIGHVDHGKTTLTAAIT  LA G
Sbjct:    1 MAKQKFERTKPHVNVGTIGHVDHGKTTLTAAITTILAKG 39
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BLAST of mRNA_H-elongata_contig172885.4474.1 vs. uniprot
Match: UPI0019B92D6B (Elongation factor Tu n=1 Tax=Rhizobacter sp. TaxID=1909292 RepID=UPI0019B92D6B)

HSP 1 Score: 70.1 bits (170), Expect = 3.140e-15
Identity = 33/37 (89.19%), Postives = 36/37 (97.30%), Query Frame = 1 
Query:    1 MAREKFERTKPHVNIGTIGHVDHGKTTLTAAITATLA 111
            MA+EKF+RTKPHVNIGTIGHVDHGKTTLTAAIT T+A
Sbjct:    1 MAKEKFDRTKPHVNIGTIGHVDHGKTTLTAAITMTMA 37
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig172885.4474.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
X0XRB1_9ZZZZ5.220e-1897.44Tr-type G domain-containing protein (Fragment) n=1... [more]
A0A7S2YC73_9STRA1.490e-17100.00Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]
A0A3C1LSQ6_9SPIR2.260e-1692.11Elongation factor Tu (Fragment) n=1 Tax=Sphaerocha... [more]
A0A7S6ZPC8_9STRA3.530e-16100.00Elongation factor Tu, chloroplastic n=2 Tax=Strame... [more]
A0A7X8E8P2_9FIRM4.760e-1697.22Elongation factor Tu (Fragment) n=1 Tax=Clostridia... [more]
A0A7S4KCX9_9STRA1.060e-15100.00Hypothetical protein n=2 Tax=Bacillariophyta TaxID... [more]
A0A6I0F3R0_9CLOT1.370e-1594.44Elongation factor Tu (Fragment) n=1 Tax=Alkaliphil... [more]
K1V2J9_9ZZZZ2.470e-1589.47Protein containing Protein synthesis factor, GTP-b... [more]
A0A523DA63_9BACT3.140e-1584.62Elongation factor Tu (Fragment) n=2 Tax=Bacteria T... [more]
UPI0019B92D6B3.140e-1589.19Elongation factor Tu n=1 Tax=Rhizobacter sp. TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig172885contigH-elongata_contig172885:129..245 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score76.6
Seed ortholog evalue2.8e-12
Seed eggNOG ortholog159749.E7BWP5
Preferred nametufA
KEGG koko:K02358
GOsGO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0009295,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009941,GO:0016020,GO:0020011,GO:0031967,GO:0031974,GO:0031975,GO:0031976,GO:0031981,GO:0031984,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0048046,GO:0055035,GO:0070013
EggNOG free text desc.Elongation factor Tu
EggNOG OGs2XBKK@2836,COG0050@1,KOG0460@2759
COG Functional cat.J
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03012,ko03029,ko04147
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size117
Cds size117
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930006.022946-CDS-H-elongata_contig172885:128..2451622930006.022946-CDS-H-elongata_contig172885:128..245Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig172885 129..245 -
1691679242.9941564-CDS-H-elongata_contig172885:128..2451691679242.9941564-CDS-H-elongata_contig172885:128..245Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig172885 129..245 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig172885.4474.1prot_H-elongata_contig172885.4474.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig172885 129..245 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig172885.4474.1

>prot_H-elongata_contig172885.4474.1 ID=prot_H-elongata_contig172885.4474.1|Name=mRNA_H-elongata_contig172885.4474.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=39bp
MAREKFERTKPHVNIGTIGHVDHGKTTLTAAITATLALG
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mRNA from alignment at H-elongata_contig172885:129..245-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig172885.4474.1 ID=mRNA_H-elongata_contig172885.4474.1|Name=mRNA_H-elongata_contig172885.4474.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=117bp|location=Sequence derived from alignment at H-elongata_contig172885:129..245- (Himanthalia elongata Himel1 dioecious)
ATGGCTCGTGAAAAATTTGAACGTACAAAACCCCATGTTAACATTGGAAC
AATTGGGCATGTTGATCATGGTAAAACAACATTAACAGCCGCTATAACTG
CAACGTTAGCATTAGGA
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Coding sequence (CDS) from alignment at H-elongata_contig172885:129..245-

>mRNA_H-elongata_contig172885.4474.1 ID=mRNA_H-elongata_contig172885.4474.1|Name=mRNA_H-elongata_contig172885.4474.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=234bp|location=Sequence derived from alignment at H-elongata_contig172885:129..245- (Himanthalia elongata Himel1 dioecious)
ATGGCTCGTGAAAAATTTGAACGTACAAAACCCCATGTTAACATTGGAAC
AATTGGGCATGTTGATCATGGTAAAACAACATTAACAGCCGCTATAACTG
CAACGTTAGCATTAGGAATGGCTCGTGAAAAATTTGAACGTACAAAACCC
CATGTTAACATTGGAACAATTGGGCATGTTGATCATGGTAAAACAACATT
AACAGCCGCTATAACTGCAACGTTAGCATTAGGA
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