prot_H-elongata_contig172885.4474.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig172885.4474.1
Unique Nameprot_H-elongata_contig172885.4474.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length39
Homology
BLAST of mRNA_H-elongata_contig172885.4474.1 vs. uniprot
Match: X0XRB1_9ZZZZ (Tr-type G domain-containing protein (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=X0XRB1_9ZZZZ)

HSP 1 Score: 77.8 bits (190), Expect = 5.220e-18
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = 0
Query:    1 MAREKFERTKPHVNIGTIGHVDHGKTTLTAAITATLALG 39
            MAREKFERTKPHVNIGTIGHVDHGKTTLTAAITATL+LG
Sbjct:    1 MAREKFERTKPHVNIGTIGHVDHGKTTLTAAITATLSLG 39          
BLAST of mRNA_H-elongata_contig172885.4474.1 vs. uniprot
Match: A0A7S2YC73_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YC73_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.490e-17
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 0
Query:    1 MAREKFERTKPHVNIGTIGHVDHGKTTLTAAITATLALG 39
            MAREKFERTKPHVNIGTIGHVDHGKTTLTAAITATLALG
Sbjct:    1 MAREKFERTKPHVNIGTIGHVDHGKTTLTAAITATLALG 39          
BLAST of mRNA_H-elongata_contig172885.4474.1 vs. uniprot
Match: A0A3C1LSQ6_9SPIR (Elongation factor Tu (Fragment) n=1 Tax=Sphaerochaeta sp. TaxID=1972642 RepID=A0A3C1LSQ6_9SPIR)

HSP 1 Score: 73.2 bits (178), Expect = 2.260e-16
Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = 0
Query:    1 MAREKFERTKPHVNIGTIGHVDHGKTTLTAAITATLAL 38
            MA+EKFERTKPHVN+GTIGHVDHGKTTLTAAIT TLAL
Sbjct:    1 MAKEKFERTKPHVNVGTIGHVDHGKTTLTAAITKTLAL 38          
BLAST of mRNA_H-elongata_contig172885.4474.1 vs. uniprot
Match: A0A7S6ZPC8_9STRA (Elongation factor Tu, chloroplastic n=2 Tax=Stramenopiles TaxID=33634 RepID=A0A7S6ZPC8_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 3.530e-16
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 0
Query:    1 MAREKFERTKPHVNIGTIGHVDHGKTTLTAAITATLALG 39
            MAREKFERTKPHVNIGTIGHVDHGKTTLTAAITATLALG
Sbjct:    1 MAREKFERTKPHVNIGTIGHVDHGKTTLTAAITATLALG 39          
BLAST of mRNA_H-elongata_contig172885.4474.1 vs. uniprot
Match: A0A7X8E8P2_9FIRM (Elongation factor Tu (Fragment) n=1 Tax=Clostridia bacterium TaxID=2044939 RepID=A0A7X8E8P2_9FIRM)

HSP 1 Score: 72.8 bits (177), Expect = 4.760e-16
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 0
Query:    1 MAREKFERTKPHVNIGTIGHVDHGKTTLTAAITATL 36
            MA+EKFERTKPHVNIGTIGHVDHGKTTLTAAITATL
Sbjct:    1 MAKEKFERTKPHVNIGTIGHVDHGKTTLTAAITATL 36          
BLAST of mRNA_H-elongata_contig172885.4474.1 vs. uniprot
Match: A0A7S4KCX9_9STRA (Hypothetical protein n=2 Tax=Bacillariophyta TaxID=2836 RepID=A0A7S4KCX9_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 1.060e-15
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 0
Query:    1 MAREKFERTKPHVNIGTIGHVDHGKTTLTAAITATLAL 38
            MAREKFERTKPHVNIGTIGHVDHGKTTLTAAITATLAL
Sbjct:    1 MAREKFERTKPHVNIGTIGHVDHGKTTLTAAITATLAL 38          
BLAST of mRNA_H-elongata_contig172885.4474.1 vs. uniprot
Match: A0A6I0F3R0_9CLOT (Elongation factor Tu (Fragment) n=1 Tax=Alkaliphilus pronyensis TaxID=1482732 RepID=A0A6I0F3R0_9CLOT)

HSP 1 Score: 70.9 bits (172), Expect = 1.370e-15
Identity = 34/36 (94.44%), Postives = 35/36 (97.22%), Query Frame = 0
Query:    1 MAREKFERTKPHVNIGTIGHVDHGKTTLTAAITATL 36
            MAR+KFERTKPHVNIGTIGHVDHGKTTLTAAIT TL
Sbjct:    1 MARQKFERTKPHVNIGTIGHVDHGKTTLTAAITITL 36          
BLAST of mRNA_H-elongata_contig172885.4474.1 vs. uniprot
Match: K1V2J9_9ZZZZ (Protein containing Protein synthesis factor, GTP-binding domain protein (Fragment) n=1 Tax=human gut metagenome TaxID=408170 RepID=K1V2J9_9ZZZZ)

HSP 1 Score: 70.5 bits (171), Expect = 2.470e-15
Identity = 34/38 (89.47%), Postives = 36/38 (94.74%), Query Frame = 0
Query:    1 MAREKFERTKPHVNIGTIGHVDHGKTTLTAAITATLAL 38
            MA+ KFERTKPHVNIGTIGHVDHGKTTLTAAIT TLA+
Sbjct:   11 MAKAKFERTKPHVNIGTIGHVDHGKTTLTAAITKTLAM 48          
BLAST of mRNA_H-elongata_contig172885.4474.1 vs. uniprot
Match: A0A523DA63_9BACT (Elongation factor Tu (Fragment) n=2 Tax=Bacteria TaxID=2 RepID=A0A523DA63_9BACT)

HSP 1 Score: 70.1 bits (170), Expect = 3.140e-15
Identity = 33/39 (84.62%), Postives = 36/39 (92.31%), Query Frame = 0
Query:    1 MAREKFERTKPHVNIGTIGHVDHGKTTLTAAITATLALG 39
            MA++KFERTKPHVN+GTIGHVDHGKTTLTAAIT  LA G
Sbjct:    1 MAKQKFERTKPHVNVGTIGHVDHGKTTLTAAITTILAKG 39          
BLAST of mRNA_H-elongata_contig172885.4474.1 vs. uniprot
Match: UPI0019B92D6B (Elongation factor Tu n=1 Tax=Rhizobacter sp. TaxID=1909292 RepID=UPI0019B92D6B)

HSP 1 Score: 70.1 bits (170), Expect = 3.140e-15
Identity = 33/37 (89.19%), Postives = 36/37 (97.30%), Query Frame = 0
Query:    1 MAREKFERTKPHVNIGTIGHVDHGKTTLTAAITATLA 37
            MA+EKF+RTKPHVNIGTIGHVDHGKTTLTAAIT T+A
Sbjct:    1 MAKEKFDRTKPHVNIGTIGHVDHGKTTLTAAITMTMA 37          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig172885.4474.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
X0XRB1_9ZZZZ5.220e-1897.44Tr-type G domain-containing protein (Fragment) n=1... [more]
A0A7S2YC73_9STRA1.490e-17100.00Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]
A0A3C1LSQ6_9SPIR2.260e-1692.11Elongation factor Tu (Fragment) n=1 Tax=Sphaerocha... [more]
A0A7S6ZPC8_9STRA3.530e-16100.00Elongation factor Tu, chloroplastic n=2 Tax=Strame... [more]
A0A7X8E8P2_9FIRM4.760e-1697.22Elongation factor Tu (Fragment) n=1 Tax=Clostridia... [more]
A0A7S4KCX9_9STRA1.060e-15100.00Hypothetical protein n=2 Tax=Bacillariophyta TaxID... [more]
A0A6I0F3R0_9CLOT1.370e-1594.44Elongation factor Tu (Fragment) n=1 Tax=Alkaliphil... [more]
K1V2J9_9ZZZZ2.470e-1589.47Protein containing Protein synthesis factor, GTP-b... [more]
A0A523DA63_9BACT3.140e-1584.62Elongation factor Tu (Fragment) n=2 Tax=Bacteria T... [more]
UPI0019B92D6B3.140e-1589.19Elongation factor Tu n=1 Tax=Rhizobacter sp. TaxID... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000795Transcription factor, GTP-binding domainPFAMPF00009GTP_EFTUcoord: 10..35
e-value: 7.0E-9
score: 35.5
NoneNo IPR availableGENE3D3.40.50.300coord: 1..39
e-value: 2.0E-10
score: 42.2
NoneNo IPR availablePANTHERPTHR43721:SF19coord: 1..37
NoneNo IPR availablePANTHERPTHR43721FAMILY NOT NAMEDcoord: 1..37
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 3..34

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig172885contigH-elongata_contig172885:129..245 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig172885.4474.1mRNA_H-elongata_contig172885.4474.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig172885 129..245 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig172885.4474.1 ID=prot_H-elongata_contig172885.4474.1|Name=mRNA_H-elongata_contig172885.4474.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=39bp
MAREKFERTKPHVNIGTIGHVDHGKTTLTAAITATLALG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000795TF_GTP-bd_dom
IPR027417P-loop_NTPase