mRNA_H-elongata_contig171748.4419.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig171748.4419.1
Unique NamemRNA_H-elongata_contig171748.4419.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig171748.4419.1 vs. uniprot
Match: A0A6H5KG47_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KG47_9PHAE)

HSP 1 Score: 150 bits (380), Expect = 2.170e-40
Identity = 73/94 (77.66%), Postives = 83/94 (88.30%), Query Frame = 1
Query:    1 TIATIVDAASAPLSIVIVGVGNGDFTAMEQLDGDRNRLQDPFTGRVASRDMVQFVPFRDFSDYGSAAQHALARHVLAEIPGQFIAYMEANATYP 282
            T++ IVDAA APLSIVIVGVG GDFTAM+ LDGDR RL  PFTG+VASRDMVQFVPFRDF+ +GSAAQHALA+HVLAEIPGQFI+YM++N   P
Sbjct:  488 TVSAIVDAADAPLSIVIVGVGQGDFTAMDHLDGDRQRLTSPFTGKVASRDMVQFVPFRDFNGFGSAAQHALAKHVLAEIPGQFISYMQSNGIDP 581          
BLAST of mRNA_H-elongata_contig171748.4419.1 vs. uniprot
Match: A0A2G8LHY6_STIJA (Putative copine-8 isoform X2 n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8LHY6_STIJA)

HSP 1 Score: 107 bits (266), Expect = 7.380e-25
Identity = 58/94 (61.70%), Postives = 70/94 (74.47%), Query Frame = 1
Query:   13 IVDAASAPLSIVIVGVGNGDFTAMEQLDGDRNRLQDPFTGRVASRDMVQFVPFRDFSDYGSA--AQHALARHVLAEIPGQFIAYMEANATYPPP 288
            IV AAS P+SI+IVGVGN DFTAME+LDGD  RL   F G+VA RD+VQFVPFRDF +  +A  +Q  LA+ VLAEIP QF++YM +N   P P
Sbjct:  355 IVRAASLPMSIIIVGVGNEDFTAMEELDGDEVRLS--FQGKVAERDIVQFVPFRDFENANNAVISQAQLAKEVLAEIPDQFLSYMRSNGVKPRP 446          
BLAST of mRNA_H-elongata_contig171748.4419.1 vs. uniprot
Match: A0A161MJS2_TRIIF (Copine-8-like protein isoform x1 (Fragment) n=1 Tax=Triatoma infestans TaxID=30076 RepID=A0A161MJS2_TRIIF)

HSP 1 Score: 98.6 bits (244), Expect = 7.780e-24
Identity = 55/97 (56.70%), Postives = 67/97 (69.07%), Query Frame = 1
Query:    1 TIATIVDAASAPLSIVIVGVGNGDFTAMEQLDGDRNRLQDPFTGRVASRDMVQFVPFRDFSDYGS-AAQHALARHVLAEIPGQFIAYMEANATYPPP 288
            T   IV A+S PLSI+IVG+GN DFTAMEQLDGD   L     G  A RD+VQFVPF  +S   + +A+H LAR VLAEIPGQF++YM++    P P
Sbjct:   64 TCQAIVKASSLPLSIIIVGIGNADFTAMEQLDGDTVALTSG--GMRAERDIVQFVPFSKYSSNATLSARHLLAREVLAEIPGQFVSYMKSRNIVPKP 158          
BLAST of mRNA_H-elongata_contig171748.4419.1 vs. uniprot
Match: A0A482QZ84_9EURY (VWFA domain-containing protein n=1 Tax=Methanosarcinales archaeon TaxID=2250255 RepID=A0A482QZ84_9EURY)

HSP 1 Score: 102 bits (254), Expect = 2.630e-23
Identity = 54/96 (56.25%), Postives = 67/96 (69.79%), Query Frame = 1
Query:    1 TIATIVDAASAPLSIVIVGVGNGDFTAMEQLDGDRNRLQDPFTGRVASRDMVQFVPFRDFSDYGSAAQHALARHVLAEIPGQFIAYMEANATYPPP 288
            T+ +IVDA+  PLSIVIVGVG  DF+AME LDGD  RL     GR A+RD+VQFVPFR F+ +G+ A   LA+ VLAE+PGQ  ++M A    P P
Sbjct:  143 TVRSIVDASVLPLSIVIVGVGGADFSAMEFLDGDGGRLA--IDGRTAARDIVQFVPFRKFASFGTGAGSMLAKEVLAEVPGQLTSFMMARGIVPKP 236          
BLAST of mRNA_H-elongata_contig171748.4419.1 vs. uniprot
Match: UPI000C6D13BA (copine-5-like n=1 Tax=Centruroides sculpturatus TaxID=218467 RepID=UPI000C6D13BA)

HSP 1 Score: 92.0 bits (227), Expect = 8.120e-22
Identity = 51/94 (54.26%), Postives = 66/94 (70.21%), Query Frame = 1
Query:   13 IVDAASAPLSIVIVGVGNGDFTAMEQLDGDRNRLQDPFTGRVASRDMVQFVPFRDF--SDYGSAAQHALARHVLAEIPGQFIAYMEANATYPPP 288
            IV AA+ P+SI+IVGVGN DF+AME+LDGD  RL     G+ A RD+VQFVPFR+F   +  S +Q  LA+ VLAE+P QF+ YM+ +   P P
Sbjct:    8 IVHAATLPMSIIIVGVGNADFSAMEELDGDVVRLSS--RGKFAERDIVQFVPFREFVSGENWSKSQVLLAKEVLAELPDQFLEYMKKHNIKPKP 99          
BLAST of mRNA_H-elongata_contig171748.4419.1 vs. uniprot
Match: A0A444TUV3_ARMVU (Copine domain-containing protein n=1 Tax=Armadillidium vulgare TaxID=13347 RepID=A0A444TUV3_ARMVU)

HSP 1 Score: 92.0 bits (227), Expect = 1.190e-21
Identity = 53/96 (55.21%), Postives = 66/96 (68.75%), Query Frame = 1
Query:   13 IVDAASAPLSIVIVGVGNGDFTAMEQLDGDRNRLQDPFTGRVASRDMVQFVPFRDF----SDYGSAAQHALARHVLAEIPGQFIAYMEANATYPPP 288
            IV+A++ PLSI+IVGVGN DF AME+LDGD  RL     G+ A RD+VQFVPFR+F     D GSA    LA+ VLAE+P Q ++YM+ N   P P
Sbjct:   17 IVNASNLPLSIIIVGVGNADFNAMEELDGDVIRLS--INGKYAERDIVQFVPFRNFLQGTGDPGSARLR-LAKEVLAEVPDQLLSYMKVNNIPPQP 109          
BLAST of mRNA_H-elongata_contig171748.4419.1 vs. uniprot
Match: UPI00093ECBAB (copine-8-like n=1 Tax=Meleagris gallopavo TaxID=9103 RepID=UPI00093ECBAB)

HSP 1 Score: 90.9 bits (224), Expect = 3.200e-21
Identity = 49/92 (53.26%), Postives = 64/92 (69.57%), Query Frame = 1
Query:   22 AASAPLSIVIVGVGNGDFTAMEQLDGDRNRLQDPFTGRVASRDMVQFVPFRDFSDYGSA---AQHALARHVLAEIPGQFIAYMEANATYPPP 288
            AA  P+SI+IVGVG  +F AM +LDGD  R+     G+VA RD+VQFVPFRD++D G +   +   LA+ VLAEIP QFI+YM+A+   P P
Sbjct:   23 AAKLPMSIIIVGVGQAEFDAMVELDGDDIRISS--RGKVAERDIVQFVPFRDYTDRGGSQVLSMARLAKDVLAEIPEQFISYMKAHGIKPQP 112          
BLAST of mRNA_H-elongata_contig171748.4419.1 vs. uniprot
Match: A0A444SD06_ARMVU (GTPase Era, mitochondrial n=1 Tax=Armadillidium vulgare TaxID=13347 RepID=A0A444SD06_ARMVU)

HSP 1 Score: 92.8 bits (229), Expect = 5.040e-21
Identity = 53/96 (55.21%), Postives = 66/96 (68.75%), Query Frame = 1
Query:   13 IVDAASAPLSIVIVGVGNGDFTAMEQLDGDRNRLQDPFTGRVASRDMVQFVPFRDF----SDYGSAAQHALARHVLAEIPGQFIAYMEANATYPPP 288
            IV A++ PLSI+IVGVGN DF AME+LDGD  R+     G+ A RD+VQFVPFR+F     D GSA Q  LA+ VLAE+P Q ++YM+ N   P P
Sbjct:  104 IVKASNLPLSIIIVGVGNADFNAMEELDGDVIRVSS--NGKYAERDIVQFVPFRNFLRKKGDRGSARQR-LAKEVLAEVPDQLLSYMKVNNIPPQP 196          
BLAST of mRNA_H-elongata_contig171748.4419.1 vs. uniprot
Match: A0A6F9BWG6_9TELE (C2 domain-containing protein n=1 Tax=Coregonus sp. 'balchen' TaxID=861768 RepID=A0A6F9BWG6_9TELE)

HSP 1 Score: 95.9 bits (237), Expect = 6.630e-21
Identity = 51/95 (53.68%), Postives = 66/95 (69.47%), Query Frame = 1
Query:    1 TIATIVDAASAPLSIVIVGVGNGDFTAMEQLDGDRNRLQDPFTGRVASRDMVQFVPFRDFSDYGSAAQHALARHVLAEIPGQFIAYMEANATYPP 285
            T + IV+A+  P+SI+I+GVG  DFTAME LDGD  RL+ P TG  A+RD+VQFVPFR F +   + + ALA+ VLAE+PGQ + Y   N   PP
Sbjct:  315 TRSAIVNASRLPMSIIIIGVGGADFTAMEFLDGDDGRLRAP-TGETAARDIVQFVPFRQFQN---SPKEALAQSVLAEVPGQVVTYFNMNKLSPP 405          
BLAST of mRNA_H-elongata_contig171748.4419.1 vs. uniprot
Match: A0A4W5M6V9_9TELE (Copine III n=1 Tax=Hucho hucho TaxID=62062 RepID=A0A4W5M6V9_9TELE)

HSP 1 Score: 95.1 bits (235), Expect = 7.330e-21
Identity = 51/95 (53.68%), Postives = 67/95 (70.53%), Query Frame = 1
Query:    1 TIATIVDAASAPLSIVIVGVGNGDFTAMEQLDGDRNRLQDPFTGRVASRDMVQFVPFRDFSDYGSAAQHALARHVLAEIPGQFIAYMEANATYPP 285
            T + IV+A+  P+SI+I+GVG  DFTAME LDGD  RL+ P TG  A+RD+VQFVPFR F +   A + ALA+ VLAE+PGQ ++Y   +   PP
Sbjct:  258 TRSAIVNASRLPMSIIIIGVGGADFTAMEFLDGDDGRLRAP-TGETAARDIVQFVPFRQFQN---APREALAQSVLAELPGQVVSYFSIHKLKPP 348          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig171748.4419.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KG47_9PHAE2.170e-4077.66Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A2G8LHY6_STIJA7.380e-2561.70Putative copine-8 isoform X2 n=1 Tax=Stichopus jap... [more]
A0A161MJS2_TRIIF7.780e-2456.70Copine-8-like protein isoform x1 (Fragment) n=1 Ta... [more]
A0A482QZ84_9EURY2.630e-2356.25VWFA domain-containing protein n=1 Tax=Methanosarc... [more]
UPI000C6D13BA8.120e-2254.26copine-5-like n=1 Tax=Centruroides sculpturatus Ta... [more]
A0A444TUV3_ARMVU1.190e-2155.21Copine domain-containing protein n=1 Tax=Armadilli... [more]
UPI00093ECBAB3.200e-2153.26copine-8-like n=1 Tax=Meleagris gallopavo TaxID=91... [more]
A0A444SD06_ARMVU5.040e-2155.21GTPase Era, mitochondrial n=1 Tax=Armadillidium vu... [more]
A0A6F9BWG6_9TELE6.630e-2153.68C2 domain-containing protein n=1 Tax=Coregonus sp.... [more]
A0A4W5M6V9_9TELE7.330e-2153.68Copine III n=1 Tax=Hucho hucho TaxID=62062 RepID=A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig171748contigH-elongata_contig171748:433..1354 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score151.4
Seed ortholog evalue2.7e-34
Seed eggNOG ortholog2880.D7FKI8
GOsGO:0001101,GO:0003674,GO:0005488,GO:0005543,GO:0005544,GO:0005575,GO:0005623,GO:0005886,GO:0005911,GO:0008150,GO:0008289,GO:0008361,GO:0009266,GO:0009270,GO:0009415,GO:0009506,GO:0009628,GO:0009987,GO:0010035,GO:0010118,GO:0010941,GO:0016020,GO:0016043,GO:0030054,GO:0032535,GO:0042221,GO:0043167,GO:0043168,GO:0044464,GO:0045793,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0055044,GO:0060548,GO:0065007,GO:0065008,GO:0071840,GO:0071944,GO:0090066,GO:0090332,GO:1901700
EggNOG free text desc.negative regulation of response to water deprivation
EggNOG OGsKOG1327@1,KOG1327@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size351
Cds size351
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930000.1406157-CDS-H-elongata_contig171748:432..7031622930000.1406157-CDS-H-elongata_contig171748:432..703Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig171748 433..703 +
1691679240.7578769-CDS-H-elongata_contig171748:432..7031691679240.7578769-CDS-H-elongata_contig171748:432..703Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig171748 433..703 +
1622930000.1606646-CDS-H-elongata_contig171748:1274..13541622930000.1606646-CDS-H-elongata_contig171748:1274..1354Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig171748 1275..1354 +
1691679240.7675297-CDS-H-elongata_contig171748:1274..13541691679240.7675297-CDS-H-elongata_contig171748:1274..1354Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig171748 1275..1354 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig171748.4419.1prot_H-elongata_contig171748.4419.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig171748 433..1354 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig171748.4419.1

>prot_H-elongata_contig171748.4419.1 ID=prot_H-elongata_contig171748.4419.1|Name=mRNA_H-elongata_contig171748.4419.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=117bp
TIATIVDAASAPLSIVIVGVGNGDFTAMEQLDGDRNRLQDPFTGRVASRD
MVQFVPFRDFSDYGSAAQHALARHVLAEIPGQFIAYMEANATYPPPPPPP
PPPPPPPPPPPSPRAPR
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mRNA from alignment at H-elongata_contig171748:433..1354+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig171748.4419.1 ID=mRNA_H-elongata_contig171748.4419.1|Name=mRNA_H-elongata_contig171748.4419.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=922bp|location=Sequence derived from alignment at H-elongata_contig171748:433..1354+ (Himanthalia elongata Himel1 dioecious)
ACCATCGCAACCATCGTGGACGCGGCAAGCGCGCCGCTCTCGATCGTAAT TGTCGGCGTGGGTAACGGTGACTTCACCGCCATGGAGCAGCTAGACGGCG ACAGGAATCGCCTCCAAGACCCCTTCACAGGCAGGGTCGCCTCCCGCGAC ATGGTACAGTTCGTCCCGTTTCGTGACTTTAGCGACTACGGCTCCGCCGC GCAGCACGCGCTCGCGAGGCACGTCCTGGCCGAGATACCCGGTCAGTTTA TCGCGTACATGGAAGCGAACGGTATCGCCCCCAATAAGGACAAGGCGCTT GGCGCCTGCTTTGCGAGCGCGCCGGGGTTTCATTCTCTTCCCGGGGTGGG GATTTTCGAGGCGGAGAACGCGCTGCCAAGGCCGCCGCTAGATGGTTTTG TGGGACAAGAAAACCCGAATGACTTGCCACCACCGTTCTCGATGTAGAAG GTGGTGGTTGATGTTAACGGCGCTGTTTTGTGGGCTGCTTCGTGCCGAAA GGACACCGGGGAAGTGCGTTCGGGGTGGGTGGGTGGGGAAAGGGATGGAA ATGAAAGTCAAAGAGAGCAACTGGTGCCATCGTTTTATTTTGTTTTGTTT TTTTGCTCCACGACGGCGGGTCTTATGGGCCTGTCACCCATGTCTTCGTG GTGGCGAATGTGCGTCGTGCTTCTCTTAGAAAGGGGAGATCGTGCGCGTA GGGTCAGCCACGCTTTTGTTTCGGTCTTCAATTCACCCACGCTTTTGGGG GAAGACGTCCAAACGACGAGCGAGGTCAAGGTATCCCCTGAGTGAGTTTC CCTTTTGCGACCTCTTTCCTGATCGACTTCTCGCCGATTTAGCTACCTAC CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC TCCTTCCCCGCGGGCGCCGCGC
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Coding sequence (CDS) from alignment at H-elongata_contig171748:433..1354+

>mRNA_H-elongata_contig171748.4419.1 ID=mRNA_H-elongata_contig171748.4419.1|Name=mRNA_H-elongata_contig171748.4419.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=702bp|location=Sequence derived from alignment at H-elongata_contig171748:433..1354+ (Himanthalia elongata Himel1 dioecious)
ACCATCGCAACCATCGTGGACGCGGCAAGCGCGCCGCTCTCGATCGTAAT
TGTCGGCGTGGGTAACGGTGACTTCACCGCCATGGAGCAGCTAGACGGCG
ACAGGAATCGCCTCCAAGACCCCTTCACAGGCAGGGTCGCCTCCCGCGAC
ATGGTACAGTTCGTCCCGTTTCGTGACTTTAGCGACTACGGCTCCGCCGC
GCAGCACGCGCTCGCGAGGCACGTCCTGGCCGAGATACCCGGTCAGTTTA
TCGCGTACATGGAAGCGAACGACCATCGCAACCATCGTGGACGCGGCAAG
CGCGCCGCTCTCGATCGTAATTGTCGGCGTGGGTAACGGTGACTTCACCG
CCATGGAGCAGCTAGACGGCGACAGGAATCGCCTCCAAGACCCCTTCACA
GGCAGGGTCGCCTCCCGCGACATGGTACAGTTCGTCCCGTTTCGTGACTT
TAGCGACTACGGCTCCGCCGCGCAGCACGCGCTCGCGAGGCACGTCCTGG
CCGAGATACCCGGTCAGTTTATCGCGTACATGGAAGCGAACGCTACCTAC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
TCCTTCCCCGCGGGCGCCGCGCCTACCTACCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCTTCCCCGCGGGCGCCGC
GC
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