mRNA_H-elongata_contig171674.4415.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig171674.4415.1
Unique NamemRNA_H-elongata_contig171674.4415.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig171674.4415.1 vs. uniprot
Match: D7FUP2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUP2_ECTSI)

HSP 1 Score: 125 bits (313), Expect = 1.040e-35
Identity = 59/72 (81.94%), Postives = 62/72 (86.11%), Query Frame = 1
Query:    4 AFVGVTKMYEARLKEKNPYQVHITYDITDLYGFIDELGDLSALVHDSSTGMYVPHGKTWIKEFLFKYFQQQA 219
            A   V KMYEARLKE NP QVHITYDITDLYGFIDELGDLSALV ++ TGMY PHGK WIKE+LFKYFQQQA
Sbjct:   28 AMERVVKMYEARLKEVNPRQVHITYDITDLYGFIDELGDLSALVANTDTGMYTPHGKAWIKEYLFKYFQQQA 99          
BLAST of mRNA_H-elongata_contig171674.4415.1 vs. uniprot
Match: A0A7S2V253_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V253_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 1.020e-21
Identity = 39/72 (54.17%), Postives = 53/72 (73.61%), Query Frame = 1
Query:    4 AFVGVTKMYEARLKEKNPYQVHITYDITDLYGFIDELGDLSALVHDSSTGMYVPHGKTWIKEFLFKYFQQQA 219
            A   V KMYE RLK+ NP   HITYDI+DL+G++D L +LSAL +D+ TG Y P+GK WIK+ +F++ + QA
Sbjct:   52 AMDSVIKMYETRLKQVNPDAAHITYDISDLFGYVDTLPELSALAYDNETGQYAPYGKEWIKQRIFQHLRSQA 123          
BLAST of mRNA_H-elongata_contig171674.4415.1 vs. uniprot
Match: A0A067C2K0_SAPPC (Enhancer of rudimentary homolog n=11 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067C2K0_SAPPC)

HSP 1 Score: 84.3 bits (207), Expect = 1.600e-19
Identity = 40/73 (54.79%), Postives = 51/73 (69.86%), Query Frame = 1
Query:    4 AFVGVTKMYEARLKEKNPYQVHITYDITDLYGFIDELGDLSALVHDSSTGMYVPHGKTWIKEFLFKYFQQQAT 222
            A  GV KMYEA+LK+ NP + +ITYDI DLY +ID L DLS LV D  T  Y+P GK WIK+ +F+  + QA+
Sbjct:   33 AMDGVVKMYEAKLKQLNPSKRNITYDIQDLYNYIDSLADLSTLVLDLETKTYLPSGKEWIKKKIFQVLRNQAS 105          
BLAST of mRNA_H-elongata_contig171674.4415.1 vs. uniprot
Match: A0A0N4UZR5_ENTVE (Enhancer of rudimentary homolog n=2 Tax=Oxyuridae TaxID=51026 RepID=A0A0N4UZR5_ENTVE)

HSP 1 Score: 84.0 bits (206), Expect = 2.040e-19
Identity = 37/71 (52.11%), Postives = 49/71 (69.01%), Query Frame = 1
Query:   13 GVTKMYEARLKEKNPYQVHITYDITDLYGFIDELGDLSALVHDSSTGMYVPHGKTWIKEFLFKYFQQQATQ 225
            GV K++E  LK+ NP    ITYD+ +L+ FID LGDLS LV + +T  Y PH K WIKE ++K  Q+QAT+
Sbjct:   31 GVCKIFEEHLKKLNPKSASITYDVQNLFHFIDRLGDLSCLVFNDATSTYAPHNKVWIKEQIYKMLQRQATK 101          
BLAST of mRNA_H-elongata_contig171674.4415.1 vs. uniprot
Match: UPI001EAFCB54 (enhancer of rudimentary homolog isoform X1 n=6 Tax=Haliotis TaxID=6452 RepID=UPI001EAFCB54)

HSP 1 Score: 83.6 bits (205), Expect = 3.050e-19
Identity = 35/70 (50.00%), Postives = 48/70 (68.57%), Query Frame = 1
Query:   10 VGVTKMYEARLKEKNPYQVHITYDITDLYGFIDELGDLSALVHDSSTGMYVPHGKTWIKEFLFKYFQQQA 219
            VG+ K++E  LK  NP    ITYDI+ L+ F+D+L DLS LV+  STG Y+PH K WIKE ++   ++QA
Sbjct:   32 VGICKIFEEHLKRSNPQSSQITYDISQLFDFVDDLADLSCLVYQKSTGTYIPHNKDWIKEKIYNMLRKQA 101          
BLAST of mRNA_H-elongata_contig171674.4415.1 vs. uniprot
Match: A0A267F8W9_9PLAT (Uncharacterized protein (Fragment) n=1 Tax=Macrostomum lignano TaxID=282301 RepID=A0A267F8W9_9PLAT)

HSP 1 Score: 82.0 bits (201), Expect = 8.250e-19
Identity = 38/71 (53.52%), Postives = 48/71 (67.61%), Query Frame = 1
Query:   13 GVTKMYEARLKEKNPYQVHITYDITDLYGFIDELGDLSALVHDSSTGMYVPHGKTWIKEFLFKYFQQQATQ 225
            G+ K+YE  LK  NP    ITYDI+ L+ FID LGDLS LV + +TG YVPH K WIKE ++   ++QA Q
Sbjct:   18 GICKIYEEHLKVSNPNSPSITYDISQLFQFIDRLGDLSCLVLNQTTGTYVPHNKDWIKEKIYVLLRKQAGQ 88          
BLAST of mRNA_H-elongata_contig171674.4415.1 vs. uniprot
Match: H3GGY0_PHYRM (Enhancer of rudimentary homolog n=14 Tax=Oomycota TaxID=4762 RepID=H3GGY0_PHYRM)

HSP 1 Score: 82.0 bits (201), Expect = 1.340e-18
Identity = 40/69 (57.97%), Postives = 49/69 (71.01%), Query Frame = 1
Query:   13 GVTKMYEARLKEKNPYQVHITYDITDLYGFIDELGDLSALVHDSSTGMYVPHGKTWIKEFLFKYFQQQA 219
            GV KMYEA+LK+ NP   +ITYDI DLY +ID L DLSALV D  T  Y+P GK WIK+ +F+  + QA
Sbjct:   37 GVVKMYEAKLKQLNPSMKNITYDIQDLYTYIDSLTDLSALVLDLETKTYLPCGKEWIKKKVFQVLKNQA 105          
BLAST of mRNA_H-elongata_contig171674.4415.1 vs. uniprot
Match: M4B8I6_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B8I6_HYAAE)

HSP 1 Score: 80.9 bits (198), Expect = 1.540e-18
Identity = 40/69 (57.97%), Postives = 49/69 (71.01%), Query Frame = 1
Query:   13 GVTKMYEARLKEKNPYQVHITYDITDLYGFIDELGDLSALVHDSSTGMYVPHGKTWIKEFLFKYFQQQA 219
            GV KMYEA+LK+ NP   +ITYDI DLY +ID L DLSALV D  T  Y+P GK WIK+ +F+  + QA
Sbjct:    3 GVVKMYEAKLKQLNPDLKNITYDIQDLYTYIDSLTDLSALVLDLETKTYLPCGKEWIKKKVFQVLKNQA 71          
BLAST of mRNA_H-elongata_contig171674.4415.1 vs. uniprot
Match: A0A3S3MX90_9MAGN (Enhancer of rudimentary homolog n=3 Tax=Mesangiospermae TaxID=1437183 RepID=A0A3S3MX90_9MAGN)

HSP 1 Score: 81.6 bits (200), Expect = 1.750e-18
Identity = 36/74 (48.65%), Postives = 54/74 (72.97%), Query Frame = 1
Query:    4 AFVGVTKMYEARLKEKNPYQVHITYDITDLYGFIDELGDLSALVHDSSTGMYVPHGKTWIKEFLFKYFQQQATQ 225
            A  G+  +YE +LK+ NP  ++ITYDI DLY FID L D+SALV+D ST  Y+P+ + WIK+  F++ +++AT+
Sbjct:   30 AMDGICGLYERKLKDLNPAILNITYDIADLYNFIDGLADMSALVYDHSTQAYLPYDRQWIKQRTFQHLKKRATR 103          
BLAST of mRNA_H-elongata_contig171674.4415.1 vs. uniprot
Match: W2GHL6_PHYPR (Enhancer of rudimentary homolog n=9 Tax=Phytophthora TaxID=4783 RepID=W2GHL6_PHYPR)

HSP 1 Score: 81.3 bits (199), Expect = 2.690e-18
Identity = 40/69 (57.97%), Postives = 49/69 (71.01%), Query Frame = 1
Query:   13 GVTKMYEARLKEKNPYQVHITYDITDLYGFIDELGDLSALVHDSSTGMYVPHGKTWIKEFLFKYFQQQA 219
            GV KMYEA+LK+ NP   +ITYDI DLY +ID L DLSALV D  T  Y+P GK WIK+ +F+  + QA
Sbjct:   37 GVVKMYEAKLKQLNPNLKNITYDIQDLYTYIDSLTDLSALVLDLETKTYLPCGKEWIKKKVFQVLKNQA 105          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig171674.4415.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUP2_ECTSI1.040e-3581.94Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2V253_9STRA1.020e-2154.17Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A067C2K0_SAPPC1.600e-1954.79Enhancer of rudimentary homolog n=11 Tax=Saprolegn... [more]
A0A0N4UZR5_ENTVE2.040e-1952.11Enhancer of rudimentary homolog n=2 Tax=Oxyuridae ... [more]
UPI001EAFCB543.050e-1950.00enhancer of rudimentary homolog isoform X1 n=6 Tax... [more]
A0A267F8W9_9PLAT8.250e-1953.52Uncharacterized protein (Fragment) n=1 Tax=Macrost... [more]
H3GGY0_PHYRM1.340e-1857.97Enhancer of rudimentary homolog n=14 Tax=Oomycota ... [more]
M4B8I6_HYAAE1.540e-1857.97Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A3S3MX90_9MAGN1.750e-1848.65Enhancer of rudimentary homolog n=3 Tax=Mesangiosp... [more]
W2GHL6_PHYPR2.690e-1857.97Enhancer of rudimentary homolog n=9 Tax=Phytophtho... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig171674contigH-elongata_contig171674:333..893 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.9
Seed ortholog evalue2.3e-25
Seed eggNOG ortholog2880.D7FUP2
Preferred nameCLEC2L
KEGG koko:K17086
EggNOG free text desc.positive regulation of Notch signaling pathway
EggNOG OGsKOG1766@1,KOG1766@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEnhancer of rudimentary
Ec32 orthologEc-26_002200.1
Exons2
Model size231
Cds size207
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig171674.4415.1prot_H-elongata_contig171674.4415.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig171674 357..893 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929999.721272-UTR-H-elongata_contig171674:332..3561622929999.721272-UTR-H-elongata_contig171674:332..356Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig171674 333..356 +
1691679240.6445134-UTR-H-elongata_contig171674:332..3561691679240.6445134-UTR-H-elongata_contig171674:332..356Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig171674 333..356 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929999.7460692-CDS-H-elongata_contig171674:356..4661622929999.7460692-CDS-H-elongata_contig171674:356..466Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig171674 357..466 +
1691679240.6560233-CDS-H-elongata_contig171674:356..4661691679240.6560233-CDS-H-elongata_contig171674:356..466Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig171674 357..466 +
1622929999.766919-CDS-H-elongata_contig171674:796..8931622929999.766919-CDS-H-elongata_contig171674:796..893Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig171674 797..893 +
1691679240.6661587-CDS-H-elongata_contig171674:796..8931691679240.6661587-CDS-H-elongata_contig171674:796..893Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig171674 797..893 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig171674.4415.1

>prot_H-elongata_contig171674.4415.1 ID=prot_H-elongata_contig171674.4415.1|Name=mRNA_H-elongata_contig171674.4415.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=69bp
MYEARLKEKNPYQVHITYDITDLYGFIDELGDLSALVHDSSTGMYVPHGK
TWIKEFLFKYFQQQATQK*
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mRNA from alignment at H-elongata_contig171674:333..893+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig171674.4415.1 ID=mRNA_H-elongata_contig171674.4415.1|Name=mRNA_H-elongata_contig171674.4415.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=561bp|location=Sequence derived from alignment at H-elongata_contig171674:333..893+ (Himanthalia elongata Himel1 dioecious)
TCCGCTTTCGTAGGCGTGACGAAGATGTACGAGGCACGGTTGAAGGAGAA AAATCCGTACCAGGTACACATCACGTACGACATCACCGACCTCTACGGCT TCATCGACGAACTCGGGGACCTTAGCGCTCTCGTGTGAGTCTGGACGCCG TAGCTCGGCGGCGTTGGAGCTATTCCTGCACGAGCGAGAGTGATCGCAGG CCCCGTGAAGATTCAGCCAGCTCAAAAGGAGCAGGAGCTAGGTTGCGCCG CCGCCGCTGCTACCGAACTCTAGCGGTTATCGAACGTCTCCACCGCGACA AGTTTCCGTTACGTTGCGGTGACCTTGCTTGCTTGCGTGAATTGTATGTC GGTTTAGCTTCGCGTTGATACACAATACACATACAAATGAGCACACACGT AACGCCGCGCGCTGCCCTTCCTTTATTGCGTGTATTTGTTACCCTTCTTT TCTTTTACCGTAAGCCATGATTCATCGACCGGGATGTACGTTCCGCACGG CAAGACATGGATAAAGGAGTTTCTTTTCAAATACTTCCAACAGCAGGCAA CGCAAAAATAG
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Coding sequence (CDS) from alignment at H-elongata_contig171674:333..893+

>mRNA_H-elongata_contig171674.4415.1 ID=mRNA_H-elongata_contig171674.4415.1|Name=mRNA_H-elongata_contig171674.4415.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=414bp|location=Sequence derived from alignment at H-elongata_contig171674:333..893+ (Himanthalia elongata Himel1 dioecious)
ATGTACGAGGCACGGTTGAAGGAGAAAAATCCGTACCAGGTACACATCAC
GTACGACATCACCGACCTCTACGGCTTCATCGACGAACTCGGGGACCTTA
GCGCTCTCGTATGTACGAGGCACGGTTGAAGGAGAAAAATCCGTACCAGG
TACACATCACGTACGACATCACCGACCTCTACGGCTTCATCGACGAACTC
GGGGACCTTAGCGCTCTCGTCCATGATTCATCGACCGGGATGTACGTTCC
GCACGGCAAGACATGGATAAAGGAGTTTCTTTTCAAATACTTCCAACAGC
AGGCAACGCAAAAATAGCCATGATTCATCGACCGGGATGTACGTTCCGCA
CGGCAAGACATGGATAAAGGAGTTTCTTTTCAAATACTTCCAACAGCAGG
CAACGCAAAAATAG
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