mRNA_H-elongata_contig171674.4415.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig171674.4415.1 vs. uniprot
Match: D7FUP2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUP2_ECTSI) HSP 1 Score: 125 bits (313), Expect = 1.040e-35 Identity = 59/72 (81.94%), Postives = 62/72 (86.11%), Query Frame = 1
Query: 4 AFVGVTKMYEARLKEKNPYQVHITYDITDLYGFIDELGDLSALVHDSSTGMYVPHGKTWIKEFLFKYFQQQA 219
A V KMYEARLKE NP QVHITYDITDLYGFIDELGDLSALV ++ TGMY PHGK WIKE+LFKYFQQQA
Sbjct: 28 AMERVVKMYEARLKEVNPRQVHITYDITDLYGFIDELGDLSALVANTDTGMYTPHGKAWIKEYLFKYFQQQA 99
BLAST of mRNA_H-elongata_contig171674.4415.1 vs. uniprot
Match: A0A7S2V253_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V253_9STRA) HSP 1 Score: 90.5 bits (223), Expect = 1.020e-21 Identity = 39/72 (54.17%), Postives = 53/72 (73.61%), Query Frame = 1
Query: 4 AFVGVTKMYEARLKEKNPYQVHITYDITDLYGFIDELGDLSALVHDSSTGMYVPHGKTWIKEFLFKYFQQQA 219
A V KMYE RLK+ NP HITYDI+DL+G++D L +LSAL +D+ TG Y P+GK WIK+ +F++ + QA
Sbjct: 52 AMDSVIKMYETRLKQVNPDAAHITYDISDLFGYVDTLPELSALAYDNETGQYAPYGKEWIKQRIFQHLRSQA 123
BLAST of mRNA_H-elongata_contig171674.4415.1 vs. uniprot
Match: A0A067C2K0_SAPPC (Enhancer of rudimentary homolog n=11 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067C2K0_SAPPC) HSP 1 Score: 84.3 bits (207), Expect = 1.600e-19 Identity = 40/73 (54.79%), Postives = 51/73 (69.86%), Query Frame = 1
Query: 4 AFVGVTKMYEARLKEKNPYQVHITYDITDLYGFIDELGDLSALVHDSSTGMYVPHGKTWIKEFLFKYFQQQAT 222
A GV KMYEA+LK+ NP + +ITYDI DLY +ID L DLS LV D T Y+P GK WIK+ +F+ + QA+
Sbjct: 33 AMDGVVKMYEAKLKQLNPSKRNITYDIQDLYNYIDSLADLSTLVLDLETKTYLPSGKEWIKKKIFQVLRNQAS 105
BLAST of mRNA_H-elongata_contig171674.4415.1 vs. uniprot
Match: A0A0N4UZR5_ENTVE (Enhancer of rudimentary homolog n=2 Tax=Oxyuridae TaxID=51026 RepID=A0A0N4UZR5_ENTVE) HSP 1 Score: 84.0 bits (206), Expect = 2.040e-19 Identity = 37/71 (52.11%), Postives = 49/71 (69.01%), Query Frame = 1
Query: 13 GVTKMYEARLKEKNPYQVHITYDITDLYGFIDELGDLSALVHDSSTGMYVPHGKTWIKEFLFKYFQQQATQ 225
GV K++E LK+ NP ITYD+ +L+ FID LGDLS LV + +T Y PH K WIKE ++K Q+QAT+
Sbjct: 31 GVCKIFEEHLKKLNPKSASITYDVQNLFHFIDRLGDLSCLVFNDATSTYAPHNKVWIKEQIYKMLQRQATK 101
BLAST of mRNA_H-elongata_contig171674.4415.1 vs. uniprot
Match: UPI001EAFCB54 (enhancer of rudimentary homolog isoform X1 n=6 Tax=Haliotis TaxID=6452 RepID=UPI001EAFCB54) HSP 1 Score: 83.6 bits (205), Expect = 3.050e-19 Identity = 35/70 (50.00%), Postives = 48/70 (68.57%), Query Frame = 1
Query: 10 VGVTKMYEARLKEKNPYQVHITYDITDLYGFIDELGDLSALVHDSSTGMYVPHGKTWIKEFLFKYFQQQA 219
VG+ K++E LK NP ITYDI+ L+ F+D+L DLS LV+ STG Y+PH K WIKE ++ ++QA
Sbjct: 32 VGICKIFEEHLKRSNPQSSQITYDISQLFDFVDDLADLSCLVYQKSTGTYIPHNKDWIKEKIYNMLRKQA 101
BLAST of mRNA_H-elongata_contig171674.4415.1 vs. uniprot
Match: A0A267F8W9_9PLAT (Uncharacterized protein (Fragment) n=1 Tax=Macrostomum lignano TaxID=282301 RepID=A0A267F8W9_9PLAT) HSP 1 Score: 82.0 bits (201), Expect = 8.250e-19 Identity = 38/71 (53.52%), Postives = 48/71 (67.61%), Query Frame = 1
Query: 13 GVTKMYEARLKEKNPYQVHITYDITDLYGFIDELGDLSALVHDSSTGMYVPHGKTWIKEFLFKYFQQQATQ 225
G+ K+YE LK NP ITYDI+ L+ FID LGDLS LV + +TG YVPH K WIKE ++ ++QA Q
Sbjct: 18 GICKIYEEHLKVSNPNSPSITYDISQLFQFIDRLGDLSCLVLNQTTGTYVPHNKDWIKEKIYVLLRKQAGQ 88
BLAST of mRNA_H-elongata_contig171674.4415.1 vs. uniprot
Match: H3GGY0_PHYRM (Enhancer of rudimentary homolog n=14 Tax=Oomycota TaxID=4762 RepID=H3GGY0_PHYRM) HSP 1 Score: 82.0 bits (201), Expect = 1.340e-18 Identity = 40/69 (57.97%), Postives = 49/69 (71.01%), Query Frame = 1
Query: 13 GVTKMYEARLKEKNPYQVHITYDITDLYGFIDELGDLSALVHDSSTGMYVPHGKTWIKEFLFKYFQQQA 219
GV KMYEA+LK+ NP +ITYDI DLY +ID L DLSALV D T Y+P GK WIK+ +F+ + QA
Sbjct: 37 GVVKMYEAKLKQLNPSMKNITYDIQDLYTYIDSLTDLSALVLDLETKTYLPCGKEWIKKKVFQVLKNQA 105
BLAST of mRNA_H-elongata_contig171674.4415.1 vs. uniprot
Match: M4B8I6_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B8I6_HYAAE) HSP 1 Score: 80.9 bits (198), Expect = 1.540e-18 Identity = 40/69 (57.97%), Postives = 49/69 (71.01%), Query Frame = 1
Query: 13 GVTKMYEARLKEKNPYQVHITYDITDLYGFIDELGDLSALVHDSSTGMYVPHGKTWIKEFLFKYFQQQA 219
GV KMYEA+LK+ NP +ITYDI DLY +ID L DLSALV D T Y+P GK WIK+ +F+ + QA
Sbjct: 3 GVVKMYEAKLKQLNPDLKNITYDIQDLYTYIDSLTDLSALVLDLETKTYLPCGKEWIKKKVFQVLKNQA 71
BLAST of mRNA_H-elongata_contig171674.4415.1 vs. uniprot
Match: A0A3S3MX90_9MAGN (Enhancer of rudimentary homolog n=3 Tax=Mesangiospermae TaxID=1437183 RepID=A0A3S3MX90_9MAGN) HSP 1 Score: 81.6 bits (200), Expect = 1.750e-18 Identity = 36/74 (48.65%), Postives = 54/74 (72.97%), Query Frame = 1
Query: 4 AFVGVTKMYEARLKEKNPYQVHITYDITDLYGFIDELGDLSALVHDSSTGMYVPHGKTWIKEFLFKYFQQQATQ 225
A G+ +YE +LK+ NP ++ITYDI DLY FID L D+SALV+D ST Y+P+ + WIK+ F++ +++AT+
Sbjct: 30 AMDGICGLYERKLKDLNPAILNITYDIADLYNFIDGLADMSALVYDHSTQAYLPYDRQWIKQRTFQHLKKRATR 103
BLAST of mRNA_H-elongata_contig171674.4415.1 vs. uniprot
Match: W2GHL6_PHYPR (Enhancer of rudimentary homolog n=9 Tax=Phytophthora TaxID=4783 RepID=W2GHL6_PHYPR) HSP 1 Score: 81.3 bits (199), Expect = 2.690e-18 Identity = 40/69 (57.97%), Postives = 49/69 (71.01%), Query Frame = 1
Query: 13 GVTKMYEARLKEKNPYQVHITYDITDLYGFIDELGDLSALVHDSSTGMYVPHGKTWIKEFLFKYFQQQA 219
GV KMYEA+LK+ NP +ITYDI DLY +ID L DLSALV D T Y+P GK WIK+ +F+ + QA
Sbjct: 37 GVVKMYEAKLKQLNPNLKNITYDIQDLYTYIDSLTDLSALVLDLETKTYLPCGKEWIKKKVFQVLKNQA 105 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig171674.4415.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig171674.4415.1 >prot_H-elongata_contig171674.4415.1 ID=prot_H-elongata_contig171674.4415.1|Name=mRNA_H-elongata_contig171674.4415.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=69bp MYEARLKEKNPYQVHITYDITDLYGFIDELGDLSALVHDSSTGMYVPHGKback to top mRNA from alignment at H-elongata_contig171674:333..893+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig171674.4415.1 ID=mRNA_H-elongata_contig171674.4415.1|Name=mRNA_H-elongata_contig171674.4415.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=561bp|location=Sequence derived from alignment at H-elongata_contig171674:333..893+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig171674:333..893+ >mRNA_H-elongata_contig171674.4415.1 ID=mRNA_H-elongata_contig171674.4415.1|Name=mRNA_H-elongata_contig171674.4415.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=414bp|location=Sequence derived from alignment at H-elongata_contig171674:333..893+ (Himanthalia elongata Himel1 dioecious)back to top |