mRNA_H-elongata_contig171068.4387.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig171068.4387.1 vs. uniprot
Match: A0A6H5GI29_9HEMI (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GI29_9HEMI) HSP 1 Score: 97.4 bits (241), Expect = 1.950e-20 Identity = 48/120 (40.00%), Postives = 71/120 (59.17%), Query Frame = 2
Query: 146 RNTSAGL*LKGSGKWRVCTIRKKYSPTPSTSSIRMLLVTAAAKDDEQRHFDAERAFLKADIDEELYIKIPDEYQKFPGSVGRLNKAIYGLVQAGRCWNNKFCSDMAAIGFEQGKADPCVF 505
R A L ++G + ++ YSP SS+R L+ AA KD + H D + A+L D++EE+Y++ P + + G V RL KA+YGL QAGRCWN K +A + F + K+DPC+F
Sbjct: 284 RRYKARLVVRGCAQVPGLDFQETYSPVVKYSSLRFLMSMAAVKDWDIDHLDVKTAYLYGDLNEEIYVRPPANFSEPDGQVWRLKKAVYGLKQAGRCWNEKITEVLAQMKFHRSKSDPCIF 403
BLAST of mRNA_H-elongata_contig171068.4387.1 vs. uniprot
Match: A0A6H5GGZ1_9HEMI (Integrase catalytic domain-containing protein (Fragment) n=2 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GGZ1_9HEMI) HSP 1 Score: 97.4 bits (241), Expect = 2.100e-20 Identity = 48/120 (40.00%), Postives = 71/120 (59.17%), Query Frame = 2
Query: 146 RNTSAGL*LKGSGKWRVCTIRKKYSPTPSTSSIRMLLVTAAAKDDEQRHFDAERAFLKADIDEELYIKIPDEYQKFPGSVGRLNKAIYGLVQAGRCWNNKFCSDMAAIGFEQGKADPCVF 505
R A L ++G + ++ YSP SS+R L+ AA KD + H D + A+L D++EE+Y++ P + + G V RL KA+YGL QAGRCWN K +A + F + K+DPC+F
Sbjct: 889 RRYKARLVVRGCAQVPGLDFQETYSPVVKYSSLRFLMSMAAVKDWDIDHLDVKTAYLYGDLNEEIYVRPPANFSEPDGQVWRLKKAVYGLKQAGRCWNEKITEVLAQMKFHRSKSDPCIF 1008
BLAST of mRNA_H-elongata_contig171068.4387.1 vs. uniprot
Match: A0A0A9XEE3_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9XEE3_LYGHE) HSP 1 Score: 89.4 bits (220), Expect = 1.070e-17 Identity = 47/121 (38.84%), Postives = 68/121 (56.20%), Query Frame = 2
Query: 146 RNTSAGL*LKGSGKWRVCTIRKKYSPTPSTSSIRMLLVTAAAKDDEQRHFDAERAFLKADIDEELYIKIPDEY-QKFPGSVGRLNKAIYGLVQAGRCWNNKFCSDMAAIGFEQGKADPCVF 505
R A L ++G + + +SP SS+R L+ A ++ H D + A+L D+ EE+Y++ P E G V RL KAIYGL QAGRCWN K CS + + F++ +ADPC+F
Sbjct: 36 RKFKARLVVRGCSQVEGADYHETFSPVVKYSSLRFLIALAVQENLNIDHLDVKTAYLYGDLGEEIYVRPPPELLNPAEGKVWRLRKAIYGLKQAGRCWNAKICSVLKKMKFKKSEADPCIF 156
BLAST of mRNA_H-elongata_contig171068.4387.1 vs. uniprot
Match: A0A0A9X2C2_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9X2C2_LYGHE) HSP 1 Score: 84.3 bits (207), Expect = 2.310e-17 Identity = 46/122 (37.70%), Postives = 70/122 (57.38%), Query Frame = 2
Query: 146 RNTSAGL*LKGSGKWRVCTIRKKYSPTPSTSSIRMLLVTAAAKDDEQRHFDAERAFLKADIDEELYIKIPDEYQKFP--GSVGRLNKAIYGLVQAGRCWNNKFCSDMAAIGFEQGKADPCVF 505
R A L ++G + + + +SP +S+R LL A + + H D + A+L DI+EE+Y+ P E + G V RL+KA+YGL Q+GRCWNNK S + +G +Q ADPC++
Sbjct: 40 RRFRARLVVRGCAQIQGQDYQDTFSPVVKYASLRYLLSLAVQNNLDIEHMDVKTAYLYGDIEEEIYVLPPPELLEPAENGKVWRLHKAMYGLKQSGRCWNNKIDSVLRELGLKQSSADPCIY 161
BLAST of mRNA_H-elongata_contig171068.4387.1 vs. uniprot
Match: A0A8I6TLX8_CIMLE (Integrase catalytic domain-containing protein n=1 Tax=Cimex lectularius TaxID=79782 RepID=A0A8I6TLX8_CIMLE) HSP 1 Score: 87.8 bits (216), Expect = 4.520e-17 Identity = 44/117 (37.61%), Postives = 67/117 (57.26%), Query Frame = 2
Query: 158 AGL*LKGSGKWRVCTIRKKYSPTPSTSSIRMLLVTAAAKDDEQRHFDAERAFLKADIDEELYIKIPDEYQKFP-GSVGRLNKAIYGLVQAGRCWNNKFCSDMAAIGFEQGKADPCVF 505
A L +KG + + + +SP S+R L A KD H D + A+L+ ID+E+Y+ P+E + P G V L +A+YGL Q+GRCWN + + M +G +Q KADPC++
Sbjct: 424 ARLVVKGCSQRQGIDYEETFSPVVKYPSLRFLFALATKKDMNITHMDVKTAYLQGQIDKEIYVIPPEEMKNKPKGKVWLLKRAMYGLKQSGRCWNQRLHTVMTGLGLQQSKADPCIY 540
BLAST of mRNA_H-elongata_contig171068.4387.1 vs. uniprot
Match: A0A8J6LHG9_TENMO (Uncharacterized protein n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6LHG9_TENMO) HSP 1 Score: 87.0 bits (214), Expect = 9.050e-17 Identity = 44/97 (45.36%), Postives = 60/97 (61.86%), Query Frame = 2
Query: 215 YSPTPSTSSIRMLLVTAAAKDDEQRHFDAERAFLKADIDEELYIKIPDEYQKFPGSVGRLNKAIYGLVQAGRCWNNKFCSDMAAIGFEQGKADPCVF 505
+SP SIRM+L AA++ R FD + AFL +IDE LY++ PD YQ V +LN+++YGL QA RCWN +F S ++ +G AD CVF
Sbjct: 282 FSPVTKFDSIRMILCVAASEKLILRQFDVKTAFLYGNIDEILYMQQPDGYQDGTKRVCKLNRSLYGLKQASRCWNQRFTSVLSRLGLHPTNADACVF 378
BLAST of mRNA_H-elongata_contig171068.4387.1 vs. uniprot
Match: A0A8J6LFP5_TENMO (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6LFP5_TENMO) HSP 1 Score: 85.1 bits (209), Expect = 3.690e-16 Identity = 43/97 (44.33%), Postives = 59/97 (60.82%), Query Frame = 2
Query: 215 YSPTPSTSSIRMLLVTAAAKDDEQRHFDAERAFLKADIDEELYIKIPDEYQKFPGSVGRLNKAIYGLVQAGRCWNNKFCSDMAAIGFEQGKADPCVF 505
+SP SIRM+L A ++ R FD + AFL +IDE LY++ PD YQ V +LN+++YGL QA RCWN +F S ++ +G AD CVF
Sbjct: 217 FSPVTKFDSIRMILCVAVSEKLILRQFDVKTAFLYGNIDEILYMQQPDGYQDGTKRVCKLNRSLYGLKQASRCWNQRFTSVLSRLGLHPTNADVCVF 313
BLAST of mRNA_H-elongata_contig171068.4387.1 vs. uniprot
Match: A0A6H5KRJ6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRJ6_9PHAE) HSP 1 Score: 84.7 bits (208), Expect = 3.960e-16 Identity = 37/97 (38.14%), Postives = 65/97 (67.01%), Query Frame = 2
Query: 215 YSPTPSTSSIRMLLVTAAAKDDEQRHFDAERAFLKADIDEELYIKIPDEYQKFPGSVGRLNKAIYGLVQAGRCWNNKFCSDMAAIGFEQGKADPCVF 505
Y+PT + SS+R+L A ++ RHFD ++AF+++D+DE++++++P+ + G + +LNK++YGL QA R W++ + +GF Q AD CVF
Sbjct: 193 YAPTVAVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVF 289
BLAST of mRNA_H-elongata_contig171068.4387.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE) HSP 1 Score: 84.7 bits (208), Expect = 3.970e-16 Identity = 37/97 (38.14%), Postives = 65/97 (67.01%), Query Frame = 2
Query: 215 YSPTPSTSSIRMLLVTAAAKDDEQRHFDAERAFLKADIDEELYIKIPDEYQKFPGSVGRLNKAIYGLVQAGRCWNNKFCSDMAAIGFEQGKADPCVF 505
Y+PT + SS+R+L A ++ RHFD ++AF+++D+DE++++++P+ + G + +LNK++YGL QA R W++ + +GF Q AD CVF
Sbjct: 12 YAPTVAVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVF 108
BLAST of mRNA_H-elongata_contig171068.4387.1 vs. uniprot
Match: A0A6H5KSD7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSD7_9PHAE) HSP 1 Score: 84.7 bits (208), Expect = 5.010e-16 Identity = 37/97 (38.14%), Postives = 65/97 (67.01%), Query Frame = 2
Query: 215 YSPTPSTSSIRMLLVTAAAKDDEQRHFDAERAFLKADIDEELYIKIPDEYQKFPGSVGRLNKAIYGLVQAGRCWNNKFCSDMAAIGFEQGKADPCVF 505
Y+PT + SS+R+L A ++ RHFD ++AF+++D+DE++++++P+ + G + +LNK++YGL QA R W++ + +GF Q AD CVF
Sbjct: 186 YAPTVAVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVF 282 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig171068.4387.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig171068.4387.1 >prot_H-elongata_contig171068.4387.1 ID=prot_H-elongata_contig171068.4387.1|Name=mRNA_H-elongata_contig171068.4387.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=86bp MLLVTAAAKDDEQRHFDAERAFLKADIDEELYIKIPDEYQKFPGSVGRLNback to top mRNA from alignment at H-elongata_contig171068:854..1358+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig171068.4387.1 ID=mRNA_H-elongata_contig171068.4387.1|Name=mRNA_H-elongata_contig171068.4387.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=505bp|location=Sequence derived from alignment at H-elongata_contig171068:854..1358+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig171068:854..1358+ >mRNA_H-elongata_contig171068.4387.1 ID=mRNA_H-elongata_contig171068.4387.1|Name=mRNA_H-elongata_contig171068.4387.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=516bp|location=Sequence derived from alignment at H-elongata_contig171068:854..1358+ (Himanthalia elongata Himel1 dioecious)back to top |