mRNA_H-elongata_contig170877.4376.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig170877.4376.1 vs. uniprot
Match: D8LLF2_ECTSI (Kinetochore protein NDC80 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLF2_ECTSI) HSP 1 Score: 108 bits (271), Expect = 4.450e-25 Identity = 66/151 (43.71%), Postives = 86/151 (56.95%), Query Frame = 1
Query: 1 PSGRFEDDVIPFLKMLRYPFALSRSSLAAVGAPQTWPKVSVLASFFFVSFAKKGVFVL-----------------------NLFSQVADLKDFIDYLGDGYSYFLEGDDDAFSALSEDYVNAREAESAKAEEVGKDTEEAIERLTQQIQQV 384
PSGRFEDDV+PFLKM+RYPF +S+SSLAAVGAPQTWPKV S+ + + + Q AD K+F+ YL + Y FLEGDD+A A++ +Y AR+ E A AEE ++ EEA E L Q Q++
Sbjct: 186 PSGRFEDDVVPFLKMVRYPFTISKSSLAAVGAPQTWPKVMGAISWIVDALLYDETIAVAEEEQRAREREATPEEXXRDKEDGVDDQGADQKNFVAYLEEAYCCFLEGDDEAHQAVTTEYTEARDEEDAGAEEFLRNLEEANEALGQTNQEL 336
BLAST of mRNA_H-elongata_contig170877.4376.1 vs. uniprot
Match: A0A836CEN5_9STRA (Kinetochore protein NDC80 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEN5_9STRA) HSP 1 Score: 77.0 bits (188), Expect = 6.720e-14 Identity = 46/106 (43.40%), Postives = 59/106 (55.66%), Query Frame = 1
Query: 1 PSGRFEDDVIPFLKMLRYPFALSRSSLAAVGAPQTWPKVSVLASFFF-VSFAKKGVFVLNLFSQ------VADLKD--FIDYLGDGYSYFLEGDDDAFSALSEDYV 291
P RFED+VIPFLK + YPF LS+S L AVGAPQ+WPK S+ + K V Q D+ D F +YLG Y+ FL GD+ + +AL +D V
Sbjct: 123 PGARFEDEVIPFLKSIHYPFTLSKSLLQAVGAPQSWPKALAAISWIVELLMYDKEVAAYESEQQDRRLAGEVDIADHAFFEYLGQAYACFLNGDETSLTALEQDLV 228
BLAST of mRNA_H-elongata_contig170877.4376.1 vs. uniprot
Match: A0A5D6YBF4_9STRA (Kinetochore protein NDC80 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YBF4_9STRA) HSP 1 Score: 68.2 bits (165), Expect = 8.340e-11 Identity = 41/109 (37.61%), Postives = 62/109 (56.88%), Query Frame = 1
Query: 10 RFEDDVIPFLKMLRYPFALSRSSLAAVGAPQTWPKVS-----VLASFFFVSFAKKGVFVLNLFSQVADLKDFIDYLGDGYSYFLEGDDDAFSALSEDYVNAREAESAKA 321
+FE+DV LK LRYPFA+S+++L AVG+P TWP + V+ + ++ V + D K F +YLG Y FL GDDD ++ L + N + A++AK+
Sbjct: 144 KFEEDVAAQLKNLRYPFAISKTALVAVGSPHTWPALLGCIAWVIELLSYDEIVQRDTNVDEFDGESGD-KAFFEYLGSAYRVFLAGDDDQYNRLEQQEAN-KHAKNAKS 250
BLAST of mRNA_H-elongata_contig170877.4376.1 vs. uniprot
Match: K3WJZ8_GLOUD (Kinetochore protein NDC80 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WJZ8_GLOUD) HSP 1 Score: 67.8 bits (164), Expect = 1.150e-10 Identity = 43/129 (33.33%), Postives = 69/129 (53.49%), Query Frame = 1
Query: 10 RFEDDVIPFLKMLRYPFALSRSSLAAVGAPQTWPKVS-----VLASFFFVSFAKKGVFVLNLFSQVADLKDFIDYLGDGYSYFLEGDDDAFSALSEDYVNAREAESAKAEEVGKDTEEAIERLTQQIQQ 381
+FE+DV LK LRYPFA+S+++L AVG+P TWP + V+ + ++ V + D K F +YLG Y FL GDDD ++ L + ++++ + + E A E L ++I+Q
Sbjct: 166 KFEEDVATQLKTLRYPFAISKTALVAVGSPHTWPALLGSIAWVIELLSYDEIVQRDTNVEEFDGENGD-KAFFEYLGTAYRVFLAGDDDQYNELEQREATKIDSQNQVIRDECSELERANEELKRRIEQ 293
BLAST of mRNA_H-elongata_contig170877.4376.1 vs. uniprot
Match: A0A7S3UM16_HETAK (Kinetochore protein NDC80 (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UM16_HETAK) HSP 1 Score: 65.9 bits (159), Expect = 1.500e-10 Identity = 42/108 (38.89%), Postives = 62/108 (57.41%), Query Frame = 1
Query: 4 SGRFEDDVIPFLKMLRYPFALSRSSLAAVGAPQTWPKVSVLASF-FFVSFAKKGVFVLNLFS-----------QVADLKDFIDYLGDGYSYFLEGDDDAFSALSEDYV 291
+G FE+ VI K LRYPFA+S+++L+AVG+P TWP ++L S + V + V + Q +D + F+DYLG Y+ FL GDDD ++AL + V
Sbjct: 57 AGSFENAVIATFKTLRYPFAISKTALSAVGSPHTWP--TLLGSLTWLVELLEYDAEVEQARAEADHHLGFDGDQASDDRAFMDYLGRAYTAFLMGDDDLYAALEGELV 162
BLAST of mRNA_H-elongata_contig170877.4376.1 vs. uniprot
Match: A0A8K1CH35_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CH35_PYTOL) HSP 1 Score: 67.0 bits (162), Expect = 2.140e-10 Identity = 41/126 (32.54%), Postives = 68/126 (53.97%), Query Frame = 1
Query: 10 RFEDDVIPFLKMLRYPFALSRSSLAAVGAPQTWPKVSVLASFFFVSFAKKGVF---VLNLFSQVADLKDFIDYLGDGYSYFLEGDDDAFSALSEDYVNAREAESAKAEEVGKDTEEAIERLTQQIQ 378
+FE+DV K LRYPFA+S+++L AVG+P TWP + ++ + V V++ F K F +YLG+ Y FL GDD+ ++ + + N +A++ E D + A L ++I+
Sbjct: 165 KFEEDVAAQFKNLRYPFAISKTALVAVGSPHTWPALLGSIAWIIELLSYDEVVQNAVVDGFDSENSEKRFFEYLGNAYRAFLSGDDEQYNLMEQQEANKYDAQNQILREECDDLQRANAELRKRIE 290
BLAST of mRNA_H-elongata_contig170877.4376.1 vs. uniprot
Match: A0A2D4CIV5_PYTIN (Kinetochore protein NDC80 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CIV5_PYTIN) HSP 1 Score: 63.5 bits (153), Expect = 3.480e-9 Identity = 40/127 (31.50%), Postives = 64/127 (50.39%), Query Frame = 1
Query: 10 RFEDDVIPFLKMLRYPFALSRSSLAAVGAPQTWPKVSVLASFFFVSFAKKGVFV---LNLFSQVADLKDFIDYLGDGYSYFLEGDDDAFSALSEDYVNAREAESAKAEEVGKDTEEAIERLTQQIQQ 381
+FE+DV K LRYPFA+S+++L AVG+P TWP + ++ + V F K F +YLG Y FL GDD+ + + + +A++ + + E A E L ++IQ+
Sbjct: 167 KFEEDVAAQFKNLRYPFAISKTALVAVGSPHTWPALLGSIAWLIELLSYDEVVASGNAEAFDGENSEKRFFEYLGSAYRAFLAGDDEQYHQMEQQEAGKYDAQNQVIRDECAELERANEELRRRIQE 293
BLAST of mRNA_H-elongata_contig170877.4376.1 vs. uniprot
Match: A0A2D4BGC7_PYTIN (Uncharacterized protein (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BGC7_PYTIN) HSP 1 Score: 63.5 bits (153), Expect = 3.740e-9 Identity = 40/127 (31.50%), Postives = 64/127 (50.39%), Query Frame = 1
Query: 10 RFEDDVIPFLKMLRYPFALSRSSLAAVGAPQTWPKVSVLASFFFVSFAKKGVFV---LNLFSQVADLKDFIDYLGDGYSYFLEGDDDAFSALSEDYVNAREAESAKAEEVGKDTEEAIERLTQQIQQ 381
+FE+DV K LRYPFA+S+++L AVG+P TWP + ++ + V F K F +YLG Y FL GDD+ + + + +A++ + + E A E L ++IQ+
Sbjct: 775 KFEEDVAAQFKNLRYPFAISKTALVAVGSPHTWPALLGSIAWLIELLSYDEVVASGNAEAFDGENSEKRFFEYLGSAYRAFLAGDDEQYHQMEQQEAGKYDAQNQVIRDECAELERANEELRRRIQE 901
BLAST of mRNA_H-elongata_contig170877.4376.1 vs. uniprot
Match: D0N350_PHYIT (Kinetochore protein NDC80 n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0N350_PHYIT) HSP 1 Score: 62.4 bits (150), Expect = 4.420e-9 Identity = 37/99 (37.37%), Postives = 51/99 (51.52%), Query Frame = 1
Query: 4 SGRFEDDVIPFLKMLRYPFALSRSSLAAVGAPQTWPKVSVLASFFFVSFAKKGVFVLNLFSQVADL--------KDFIDYLGDGYSYFLEGDDDAFSAL 276
G+FE+DV+ L+ LRYP ++S++SLAAVG P TWP + ++A + + + D K F YL Y FL GDDD F AL
Sbjct: 137 KGKFEEDVVQQLRDLRYPISISKTSLAAVGTPHTWPML-LMAMSWLIELLSYDEAIQQASENEQDGENDEENGDKPFFKYLDASYHVFLAGDDDKFEAL 234
BLAST of mRNA_H-elongata_contig170877.4376.1 vs. uniprot
Match: W7TL40_9STRA (Kinetochore protein NDC80 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TL40_9STRA) HSP 1 Score: 63.2 bits (152), Expect = 4.820e-9 Identity = 40/120 (33.33%), Postives = 64/120 (53.33%), Query Frame = 1
Query: 4 SGRFEDDVIPFLKMLRYPFALSRSSLAAVGAPQTWPKVSVLASFFFV--------------------SFAKKGVFVLNLFSQVADLKDFIDYLGDGYSYFLEGDDDAFSALSEDYVNARE 303
+G+ ED+V+ F K +RYPFA+S++S+ AVG TWP ++LAS ++ + + G ++ F + AD K +YLG Y FL+GDDD ++ L + V + E
Sbjct: 182 TGKLEDEVLAFFKAMRYPFAISKASMQAVGTMHTWP--TLLASITWMVELLTYDEEVQNDAANQAALAGSGSGCGSVDDFER-ADEKALFEYLGKAYKAFLDGDDDLYAQLEDSLVGSFE 298 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig170877.4376.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig170877.4376.1 >prot_H-elongata_contig170877.4376.1 ID=prot_H-elongata_contig170877.4376.1|Name=mRNA_H-elongata_contig170877.4376.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=128bp PSGRFEDDVIPFLKMLRYPFALSRSSLAAVGAPQTWPKVSVLASFFFVSFback to top mRNA from alignment at H-elongata_contig170877:271..1160- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig170877.4376.1 ID=mRNA_H-elongata_contig170877.4376.1|Name=mRNA_H-elongata_contig170877.4376.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=890bp|location=Sequence derived from alignment at H-elongata_contig170877:271..1160- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig170877:271..1160- >mRNA_H-elongata_contig170877.4376.1 ID=mRNA_H-elongata_contig170877.4376.1|Name=mRNA_H-elongata_contig170877.4376.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=768bp|location=Sequence derived from alignment at H-elongata_contig170877:271..1160- (Himanthalia elongata Himel1 dioecious)back to top |