mRNA_H-elongata_contig170877.4376.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig170877.4376.1
Unique NamemRNA_H-elongata_contig170877.4376.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig170877.4376.1 vs. uniprot
Match: D8LLF2_ECTSI (Kinetochore protein NDC80 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLF2_ECTSI)

HSP 1 Score: 108 bits (271), Expect = 4.450e-25
Identity = 66/151 (43.71%), Postives = 86/151 (56.95%), Query Frame = 1
Query:    1 PSGRFEDDVIPFLKMLRYPFALSRSSLAAVGAPQTWPKVSVLASFFFVSFAKKGVFVL-----------------------NLFSQVADLKDFIDYLGDGYSYFLEGDDDAFSALSEDYVNAREAESAKAEEVGKDTEEAIERLTQQIQQV 384
            PSGRFEDDV+PFLKM+RYPF +S+SSLAAVGAPQTWPKV    S+   +        +                        +  Q AD K+F+ YL + Y  FLEGDD+A  A++ +Y  AR+ E A AEE  ++ EEA E L Q  Q++
Sbjct:  186 PSGRFEDDVVPFLKMVRYPFTISKSSLAAVGAPQTWPKVMGAISWIVDALLYDETIAVAEEEQRAREREATPEEXXRDKEDGVDDQGADQKNFVAYLEEAYCCFLEGDDEAHQAVTTEYTEARDEEDAGAEEFLRNLEEANEALGQTNQEL 336          
BLAST of mRNA_H-elongata_contig170877.4376.1 vs. uniprot
Match: A0A836CEN5_9STRA (Kinetochore protein NDC80 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEN5_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 6.720e-14
Identity = 46/106 (43.40%), Postives = 59/106 (55.66%), Query Frame = 1
Query:    1 PSGRFEDDVIPFLKMLRYPFALSRSSLAAVGAPQTWPKVSVLASFFF-VSFAKKGVFVLNLFSQ------VADLKD--FIDYLGDGYSYFLEGDDDAFSALSEDYV 291
            P  RFED+VIPFLK + YPF LS+S L AVGAPQ+WPK     S+   +    K V       Q        D+ D  F +YLG  Y+ FL GD+ + +AL +D V
Sbjct:  123 PGARFEDEVIPFLKSIHYPFTLSKSLLQAVGAPQSWPKALAAISWIVELLMYDKEVAAYESEQQDRRLAGEVDIADHAFFEYLGQAYACFLNGDETSLTALEQDLV 228          
BLAST of mRNA_H-elongata_contig170877.4376.1 vs. uniprot
Match: A0A5D6YBF4_9STRA (Kinetochore protein NDC80 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YBF4_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 8.340e-11
Identity = 41/109 (37.61%), Postives = 62/109 (56.88%), Query Frame = 1
Query:   10 RFEDDVIPFLKMLRYPFALSRSSLAAVGAPQTWPKVS-----VLASFFFVSFAKKGVFVLNLFSQVADLKDFIDYLGDGYSYFLEGDDDAFSALSEDYVNAREAESAKA 321
            +FE+DV   LK LRYPFA+S+++L AVG+P TWP +      V+    +    ++   V     +  D K F +YLG  Y  FL GDDD ++ L +   N + A++AK+
Sbjct:  144 KFEEDVAAQLKNLRYPFAISKTALVAVGSPHTWPALLGCIAWVIELLSYDEIVQRDTNVDEFDGESGD-KAFFEYLGSAYRVFLAGDDDQYNRLEQQEAN-KHAKNAKS 250          
BLAST of mRNA_H-elongata_contig170877.4376.1 vs. uniprot
Match: K3WJZ8_GLOUD (Kinetochore protein NDC80 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WJZ8_GLOUD)

HSP 1 Score: 67.8 bits (164), Expect = 1.150e-10
Identity = 43/129 (33.33%), Postives = 69/129 (53.49%), Query Frame = 1
Query:   10 RFEDDVIPFLKMLRYPFALSRSSLAAVGAPQTWPKVS-----VLASFFFVSFAKKGVFVLNLFSQVADLKDFIDYLGDGYSYFLEGDDDAFSALSEDYVNAREAESAKAEEVGKDTEEAIERLTQQIQQ 381
            +FE+DV   LK LRYPFA+S+++L AVG+P TWP +      V+    +    ++   V     +  D K F +YLG  Y  FL GDDD ++ L +      ++++    +   + E A E L ++I+Q
Sbjct:  166 KFEEDVATQLKTLRYPFAISKTALVAVGSPHTWPALLGSIAWVIELLSYDEIVQRDTNVEEFDGENGD-KAFFEYLGTAYRVFLAGDDDQYNELEQREATKIDSQNQVIRDECSELERANEELKRRIEQ 293          
BLAST of mRNA_H-elongata_contig170877.4376.1 vs. uniprot
Match: A0A7S3UM16_HETAK (Kinetochore protein NDC80 (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UM16_HETAK)

HSP 1 Score: 65.9 bits (159), Expect = 1.500e-10
Identity = 42/108 (38.89%), Postives = 62/108 (57.41%), Query Frame = 1
Query:    4 SGRFEDDVIPFLKMLRYPFALSRSSLAAVGAPQTWPKVSVLASF-FFVSFAKKGVFVLNLFS-----------QVADLKDFIDYLGDGYSYFLEGDDDAFSALSEDYV 291
            +G FE+ VI   K LRYPFA+S+++L+AVG+P TWP  ++L S  + V   +    V    +           Q +D + F+DYLG  Y+ FL GDDD ++AL  + V
Sbjct:   57 AGSFENAVIATFKTLRYPFAISKTALSAVGSPHTWP--TLLGSLTWLVELLEYDAEVEQARAEADHHLGFDGDQASDDRAFMDYLGRAYTAFLMGDDDLYAALEGELV 162          
BLAST of mRNA_H-elongata_contig170877.4376.1 vs. uniprot
Match: A0A8K1CH35_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CH35_PYTOL)

HSP 1 Score: 67.0 bits (162), Expect = 2.140e-10
Identity = 41/126 (32.54%), Postives = 68/126 (53.97%), Query Frame = 1
Query:   10 RFEDDVIPFLKMLRYPFALSRSSLAAVGAPQTWPKVSVLASFFFVSFAKKGVF---VLNLFSQVADLKDFIDYLGDGYSYFLEGDDDAFSALSEDYVNAREAESAKAEEVGKDTEEAIERLTQQIQ 378
            +FE+DV    K LRYPFA+S+++L AVG+P TWP +    ++     +   V    V++ F      K F +YLG+ Y  FL GDD+ ++ + +   N  +A++    E   D + A   L ++I+
Sbjct:  165 KFEEDVAAQFKNLRYPFAISKTALVAVGSPHTWPALLGSIAWIIELLSYDEVVQNAVVDGFDSENSEKRFFEYLGNAYRAFLSGDDEQYNLMEQQEANKYDAQNQILREECDDLQRANAELRKRIE 290          
BLAST of mRNA_H-elongata_contig170877.4376.1 vs. uniprot
Match: A0A2D4CIV5_PYTIN (Kinetochore protein NDC80 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CIV5_PYTIN)

HSP 1 Score: 63.5 bits (153), Expect = 3.480e-9
Identity = 40/127 (31.50%), Postives = 64/127 (50.39%), Query Frame = 1
Query:   10 RFEDDVIPFLKMLRYPFALSRSSLAAVGAPQTWPKVSVLASFFFVSFAKKGVFV---LNLFSQVADLKDFIDYLGDGYSYFLEGDDDAFSALSEDYVNAREAESAKAEEVGKDTEEAIERLTQQIQQ 381
            +FE+DV    K LRYPFA+S+++L AVG+P TWP +    ++     +   V        F      K F +YLG  Y  FL GDD+ +  + +      +A++    +   + E A E L ++IQ+
Sbjct:  167 KFEEDVAAQFKNLRYPFAISKTALVAVGSPHTWPALLGSIAWLIELLSYDEVVASGNAEAFDGENSEKRFFEYLGSAYRAFLAGDDEQYHQMEQQEAGKYDAQNQVIRDECAELERANEELRRRIQE 293          
BLAST of mRNA_H-elongata_contig170877.4376.1 vs. uniprot
Match: A0A2D4BGC7_PYTIN (Uncharacterized protein (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BGC7_PYTIN)

HSP 1 Score: 63.5 bits (153), Expect = 3.740e-9
Identity = 40/127 (31.50%), Postives = 64/127 (50.39%), Query Frame = 1
Query:   10 RFEDDVIPFLKMLRYPFALSRSSLAAVGAPQTWPKVSVLASFFFVSFAKKGVFV---LNLFSQVADLKDFIDYLGDGYSYFLEGDDDAFSALSEDYVNAREAESAKAEEVGKDTEEAIERLTQQIQQ 381
            +FE+DV    K LRYPFA+S+++L AVG+P TWP +    ++     +   V        F      K F +YLG  Y  FL GDD+ +  + +      +A++    +   + E A E L ++IQ+
Sbjct:  775 KFEEDVAAQFKNLRYPFAISKTALVAVGSPHTWPALLGSIAWLIELLSYDEVVASGNAEAFDGENSEKRFFEYLGSAYRAFLAGDDEQYHQMEQQEAGKYDAQNQVIRDECAELERANEELRRRIQE 901          
BLAST of mRNA_H-elongata_contig170877.4376.1 vs. uniprot
Match: D0N350_PHYIT (Kinetochore protein NDC80 n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0N350_PHYIT)

HSP 1 Score: 62.4 bits (150), Expect = 4.420e-9
Identity = 37/99 (37.37%), Postives = 51/99 (51.52%), Query Frame = 1
Query:    4 SGRFEDDVIPFLKMLRYPFALSRSSLAAVGAPQTWPKVSVLASFFFVSFAKKGVFVLNLFSQVADL--------KDFIDYLGDGYSYFLEGDDDAFSAL 276
             G+FE+DV+  L+ LRYP ++S++SLAAVG P TWP + ++A  + +        +        D         K F  YL   Y  FL GDDD F AL
Sbjct:  137 KGKFEEDVVQQLRDLRYPISISKTSLAAVGTPHTWPML-LMAMSWLIELLSYDEAIQQASENEQDGENDEENGDKPFFKYLDASYHVFLAGDDDKFEAL 234          
BLAST of mRNA_H-elongata_contig170877.4376.1 vs. uniprot
Match: W7TL40_9STRA (Kinetochore protein NDC80 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TL40_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 4.820e-9
Identity = 40/120 (33.33%), Postives = 64/120 (53.33%), Query Frame = 1
Query:    4 SGRFEDDVIPFLKMLRYPFALSRSSLAAVGAPQTWPKVSVLASFFFV--------------------SFAKKGVFVLNLFSQVADLKDFIDYLGDGYSYFLEGDDDAFSALSEDYVNARE 303
            +G+ ED+V+ F K +RYPFA+S++S+ AVG   TWP  ++LAS  ++                    + +  G   ++ F + AD K   +YLG  Y  FL+GDDD ++ L +  V + E
Sbjct:  182 TGKLEDEVLAFFKAMRYPFAISKASMQAVGTMHTWP--TLLASITWMVELLTYDEEVQNDAANQAALAGSGSGCGSVDDFER-ADEKALFEYLGKAYKAFLDGDDDLYAQLEDSLVGSFE 298          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig170877.4376.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLF2_ECTSI4.450e-2543.71Kinetochore protein NDC80 n=2 Tax=Ectocarpus TaxID... [more]
A0A836CEN5_9STRA6.720e-1443.40Kinetochore protein NDC80 n=1 Tax=Tribonema minus ... [more]
A0A5D6YBF4_9STRA8.340e-1137.61Kinetochore protein NDC80 n=1 Tax=Pythium brassicu... [more]
K3WJZ8_GLOUD1.150e-1033.33Kinetochore protein NDC80 n=1 Tax=Globisporangium ... [more]
A0A7S3UM16_HETAK1.500e-1038.89Kinetochore protein NDC80 (Fragment) n=1 Tax=Heter... [more]
A0A8K1CH35_PYTOL2.140e-1032.54Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4CIV5_PYTIN3.480e-931.50Kinetochore protein NDC80 n=1 Tax=Pythium insidios... [more]
A0A2D4BGC7_PYTIN3.740e-931.50Uncharacterized protein (Fragment) n=1 Tax=Pythium... [more]
D0N350_PHYIT4.420e-937.37Kinetochore protein NDC80 n=1 Tax=Phytophthora inf... [more]
W7TL40_9STRA4.820e-933.33Kinetochore protein NDC80 n=2 Tax=Monodopsidaceae ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig170877contigH-elongata_contig170877:271..1160 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.5
Seed ortholog evalue5.7e-22
Seed eggNOG ortholog2880.D8LLF2
Preferred nameNDC80
KEGG koko:K11547
GOsGO:0000003,GO:0000070,GO:0000132,GO:0000226,GO:0000228,GO:0000278,GO:0000280,GO:0000775,GO:0000776,GO:0000777,GO:0000778,GO:0000779,GO:0000780,GO:0000793,GO:0000794,GO:0000819,GO:0000940,GO:0000942,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0006996,GO:0007010,GO:0007017,GO:0007020,GO:0007049,GO:0007051,GO:0007052,GO:0007059,GO:0007080,GO:0007088,GO:0007127,GO:0007163,GO:0007346,GO:0008104,GO:0008150,GO:0008608,GO:0009987,GO:0010564,GO:0010965,GO:0015630,GO:0016043,GO:0022402,GO:0022414,GO:0022607,GO:0030010,GO:0030071,GO:0031109,GO:0031262,GO:0031617,GO:0031974,GO:0031981,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0033365,GO:0034501,GO:0034502,GO:0034613,GO:0034622,GO:0040001,GO:0042802,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0045132,GO:0045143,GO:0045787,GO:0045931,GO:0046785,GO:0048285,GO:0048518,GO:0048522,GO:0050000,GO:0050789,GO:0050794,GO:0051128,GO:0051179,GO:0051234,GO:0051258,GO:0051276,GO:0051293,GO:0051294,GO:0051303,GO:0051310,GO:0051315,GO:0051316,GO:0051321,GO:0051383,GO:0051455,GO:0051640,GO:0051641,GO:0051649,GO:0051653,GO:0051656,GO:0051726,GO:0051783,GO:0051983,GO:0060341,GO:0061982,GO:0065003,GO:0065007,GO:0070013,GO:0070727,GO:0071459,GO:0071840,GO:0090068,GO:0090231,GO:0090232,GO:0090266,GO:0090267,GO:0090268,GO:0097435,GO:0098687,GO:0098813,GO:0140013,GO:0140014,GO:1901976,GO:1901978,GO:1901987,GO:1901990,GO:1902099,GO:1902850,GO:1903046,GO:1903047,GO:1903504,GO:1903827,GO:1903829,GO:1905340,GO:1905342,GO:1905818
EggNOG free text desc.Phage-related minor tail protein
EggNOG OGsCOG5185@1,KOG0995@2759
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Hectar predicted targeting categoryother localisation
Exons2
Model size384
Cds size384
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929995.0819824-CDS-H-elongata_contig170877:270..5231622929995.0819824-CDS-H-elongata_contig170877:270..523Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig170877 271..523 -
1691679239.0111084-CDS-H-elongata_contig170877:270..5231691679239.0111084-CDS-H-elongata_contig170877:270..523Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig170877 271..523 -
1622929995.0979714-CDS-H-elongata_contig170877:1029..11601622929995.0979714-CDS-H-elongata_contig170877:1029..1160Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig170877 1030..1160 -
1691679239.0211542-CDS-H-elongata_contig170877:1029..11601691679239.0211542-CDS-H-elongata_contig170877:1029..1160Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig170877 1030..1160 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig170877.4376.1prot_H-elongata_contig170877.4376.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig170877 271..1160 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig170877.4376.1

>prot_H-elongata_contig170877.4376.1 ID=prot_H-elongata_contig170877.4376.1|Name=mRNA_H-elongata_contig170877.4376.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=128bp
PSGRFEDDVIPFLKMLRYPFALSRSSLAAVGAPQTWPKVSVLASFFFVSF
AKKGVFVLNLFSQVADLKDFIDYLGDGYSYFLEGDDDAFSALSEDYVNAR
EAESAKAEEVGKDTEEAIERLTQQIQQV
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mRNA from alignment at H-elongata_contig170877:271..1160-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig170877.4376.1 ID=mRNA_H-elongata_contig170877.4376.1|Name=mRNA_H-elongata_contig170877.4376.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=890bp|location=Sequence derived from alignment at H-elongata_contig170877:271..1160- (Himanthalia elongata Himel1 dioecious)
CCGTCAGGGAGGTTCGAGGACGACGTGATCCCCTTCCTCAAGATGCTCAG GTACCCTTTCGCGCTCTCGAGATCGTCTCTGGCGGCGGTCGGAGCGCCCC AAACATGGCCAAAGGTGAGTGTGCTGGCAAGGTTGATGGGCCTACGAAGG ACGGCACCGGGAACTGTAGCGGCATGTTTTTTTTATCTGTTTCTTGGTCA TGAGTTATCTCTTTGAAGGGCTTCGAGTGGGTATGGTTGACTCTTCGCAG TCTTGGGTTAAAGGCCAAGTGTTGTTTTCCTTCTACCGTATCGGTGGTTC TGGATACCATGTTTCCTGTGTCCCTTGACGCATCCCGTTGTACACCTTAC ACATCATGACGCTGCAGGTTATGGGCGCGATCTCGTGGGTTGTGGAGACG TTGCTGTTTGACGAAGCGGTTACGGTGGCCGAGGAAGAGCAGCAGCTGAG GCGCCAACAAGCCGCTCGCCAGGATGTCGATCAAGGCCAAGACGAAGATG AGGACGATGACCTCAACGAGCAGGTGTCTTAAGAAGGCCTCGTGTCGGGG GAAATGTTCCTTCCTGTTTGCGAGAGAGAGCGCGGTCAAGACGCTAAGTA GGCCTTTTCGTCGTCAAACCGTTTCCTTGCTCGTTAGTTTTTTTTTTGTC TCATTTGCTAAAAAGGGTGTTTTTGTTTTGAATCTATTTTCGCAGGTGGC GGATTTGAAGGATTTCATTGATTACTTAGGGGATGGGTACAGCTACTTCC TGGAAGGCGACGACGATGCATTCTCGGCACTGTCGGAAGACTACGTCAAC GCTCGGGAGGCGGAGAGCGCGAAGGCTGAAGAAGTCGGGAAGGATACAGA AGAGGCCATCGAACGCCTTACGCAGCAAATCCAACAGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig170877:271..1160-

>mRNA_H-elongata_contig170877.4376.1 ID=mRNA_H-elongata_contig170877.4376.1|Name=mRNA_H-elongata_contig170877.4376.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=768bp|location=Sequence derived from alignment at H-elongata_contig170877:271..1160- (Himanthalia elongata Himel1 dioecious)
CCGTCAGGGAGGTTCGAGGACGACGTGATCCCCTTCCTCAAGATGCTCAG
GTACCCTTTCGCGCTCTCGAGATCGTCTCTGGCGGCGGTCGGAGCGCCCC
AAACATGGCCAAAGGTGAGTGTGCTGGCAAGCCGTCAGGGAGGTTCGAGG
ACGACGTGATCCCCTTCCTCAAGATGCTCAGGTACCCTTTCGCGCTCTCG
AGATCGTCTCTGGCGGCGGTCGGAGCGCCCCAAACATGGCCAAAGGTGAG
TGTGCTGGCAAGTTTTTTTTTTGTCTCATTTGCTAAAAAGGGTGTTTTTG
TTTTGAATCTATTTTCGCAGGTGGCGGATTTGAAGGATTTCATTGATTAC
TTAGGGGATGGGTACAGCTACTTCCTGGAAGGCGACGACGATGCATTCTC
GGCACTGTCGGAAGACTACGTCAACGCTCGGGAGGCGGAGAGCGCGAAGG
CTGAAGAAGTCGGGAAGGATACAGAAGAGGCCATCGAACGCCTTACGCAG
CAAATCCAACAGGTGTTTTTTTTTTGTCTCATTTGCTAAAAAGGGTGTTT
TTGTTTTGAATCTATTTTCGCAGGTGGCGGATTTGAAGGATTTCATTGAT
TACTTAGGGGATGGGTACAGCTACTTCCTGGAAGGCGACGACGATGCATT
CTCGGCACTGTCGGAAGACTACGTCAACGCTCGGGAGGCGGAGAGCGCGA
AGGCTGAAGAAGTCGGGAAGGATACAGAAGAGGCCATCGAACGCCTTACG
CAGCAAATCCAACAGGTG
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