mRNA_H-elongata_contig170591.4367.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig170591.4367.1 vs. uniprot
Match: A0A6H5KAN7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAN7_9PHAE) HSP 1 Score: 217 bits (553), Expect = 4.040e-65 Identity = 136/195 (69.74%), Postives = 154/195 (78.97%), Query Frame = -2
Query: 3 SRLDKKGLGKANMALERICALLDPRRKKCSKDHIINGSPALHAAAIEDVKMVAKTFVKATAGSASSTXXXXXXXXXXXXXEPTQLEPKRQKVGSDLEERRHARLAKSKAVTASRTSSVGPATAVKRRAIIERELRMYVA*DPHRKEDDFSLLDFWLRRSKPSTCAETGEVEAGLPSLVLIARLYHGIESTSCQAE 587
SR++KK LG A M LERICALLDPRRK CS +H++NGS L A+AI DVK VAKTF +A GSASS XXXXXXXXXXXX +P PK+QKV SDLEERR RLAKSKA +A R + +TA +R AI+ERELRMY+A DP +E DFSLL+FW RRSKP TCAETGEVE GLP L LIARL+HGIESTSCQAE
Sbjct: 242 SRMEKKELGAARMPLERICALLDPRRKDCSDEHLVNGSADLKASAIADVKSVAKTFAEADLGSASSXXXXXXXXXXXXXNQPA---PKKQKVLSDLEERRLQRLAKSKAASAGRAAPAAVSTA-RRGAIVERELRMYLAEDPAEEEYDFSLLEFWQRRSKPRTCAETGEVEPGLPHLALIARLFHGIESTSCQAE 432
BLAST of mRNA_H-elongata_contig170591.4367.1 vs. uniprot
Match: A0A6H5KJ52_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ52_9PHAE) HSP 1 Score: 217 bits (553), Expect = 8.990e-63 Identity = 136/195 (69.74%), Postives = 154/195 (78.97%), Query Frame = -2
Query: 3 SRLDKKGLGKANMALERICALLDPRRKKCSKDHIINGSPALHAAAIEDVKMVAKTFVKATAGSASSTXXXXXXXXXXXXXEPTQLEPKRQKVGSDLEERRHARLAKSKAVTASRTSSVGPATAVKRRAIIERELRMYVA*DPHRKEDDFSLLDFWLRRSKPSTCAETGEVEAGLPSLVLIARLYHGIESTSCQAE 587
SR++KK LG A M LERICALLDPRRK CS +H++NGS L A+AI DVK VAKTF +A GSASS XXXXXXXXXXXX +P PK+QKV SDLEERR RLAKSKA +A R + +TA +R AI+ERELRMY+A DP +E DFSLL+FW RRSKP TCAETGEVE GLP L LIARL+HGIESTSCQAE
Sbjct: 570 SRMEKKELGAARMPLERICALLDPRRKDCSDEHLVNGSADLKASAIADVKSVAKTFAEADLGSASSXXXXXXXXXXXXXNQPA---PKKQKVLSDLEERRLQRLAKSKAASAGRAAPAAVSTA-RRGAIVERELRMYLAEDPAEEEYDFSLLEFWQRRSKPRTCAETGEVEPGLPHLALIARLFHGIESTSCQAE 760
BLAST of mRNA_H-elongata_contig170591.4367.1 vs. uniprot
Match: A0A6H5JGG8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG8_9PHAE) HSP 1 Score: 112 bits (281), Expect = 2.090e-25 Identity = 77/196 (39.29%), Postives = 110/196 (56.12%), Query Frame = -2
Query: 3 RLDKKGLGKANMALERICALLDPRRKKCSKDHIINGSPALHAAAIEDVKMVAKTFVKATAGSASSTXXXXXXXXXXXXXEPTQLEPKRQKVGSDLEERRHARLAKSKAVTASRTSSVGPATAVKRRAIIERELRMYVA*DPHRKEDDFSLLDFWLRRSKPSTCAETGEVE--AGLPSLVLIARLYHGIESTSCQAE 584
++ +KG+G A +A+ER+ AL+DPRRK D + NGS L A +D+K V F A +A + +P + PK++K+ S LEERR AR+A + S + + RR +IERE+ +Y+A +P D F++L +W RR S A TG+V A +P L IARLY GIE+TSCQAE
Sbjct: 584 KMREKGMGSAQVAVERLSALMDPRRKSLDSDQLENGSADLRKKAEDDLKAVIAKFDVGPATAAPAPAPVMNL-------DPVEPAPKKKKL-SRLEERRAARVAAATTGGDETGSLEDQSPSTTRRVLIEREVLVYLAENPQLDVDGFNVLGYWNRRGTDSVSATTGKVTSPAEMPYLAFIARLYLGIEATSCQAE 771
BLAST of mRNA_H-elongata_contig170591.4367.1 vs. uniprot
Match: A0A6H5JTB8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB8_9PHAE) HSP 1 Score: 105 bits (261), Expect = 9.190e-23 Identity = 76/196 (38.78%), Postives = 108/196 (55.10%), Query Frame = -2
Query: 3 RLDKKGLGKANMALERICALLDPRRKKCSKDHIINGSPALHAAAIEDVKMVAKTFVKATAGSASSTXXXXXXXXXXXXXEPTQLEPKRQKVGSDLEERRHARLAKSKAVTASRTSSVGPATAVKRRAIIERELRMYVA*DPHRKEDDFSLLDFWLRRSKPSTCAETGEVE--AGLPSLVLIARLYHGIESTSCQAE 584
++ +KG+G A +A+ER+ AL+DPR + D + NGS L A +D+K V F A +A + EP PK++K+ S LEERR AR+A + S + + RR +IERE+ +Y+A +P D F++L +W RR S A TG+V A +P L IARLY GIE+TSCQAE
Sbjct: 389 KMREKGVGSAQVAVERLSALMDPRLRSLDSDQLENGSADLRKKAEDDLKAVIAKFDVGPATAAPAPAPVMNLDRV----EPA---PKKKKL-SRLEERRAARVAAATTGGDETGSLEDQSPSTTRRVLIEREVLVYLAENPQLDVDGFNVLGYWNRRGTDSVSATTGKVTSPAEMPYLAFIARLYLGIEATSCQAE 576
BLAST of mRNA_H-elongata_contig170591.4367.1 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE) HSP 1 Score: 103 bits (257), Expect = 3.390e-22 Identity = 77/195 (39.49%), Postives = 107/195 (54.87%), Query Frame = -2
Query: 3 LDKKGLGKANMALERICALLDPRRKKCSKDHIINGSPALHAAAIEDVKMVAKTFVKATAGSASSTXXXXXXXXXXXXXEPTQLEPKRQKVGSDLEERRHARLAKSKAVTASRTSSVGPATAVKRRAIIERELRMYVA*DPHRKEDDFSLLDFWLRRSKPSTCAETGEVE--AGLPSLVLIARLYHGIESTSCQAE 581
+++K +GKA +ER+ AL+DPRRK + NGS L A ED+K V F + A + +P + KR+K+ S LEERR AR+A + AS S +A RR +IERE+ +Y+A + DDF++L FW RR S C+ TG V A +P L IARL+ GIE++SCQAE
Sbjct: 574 MEEKQVGKAVQQVERLSALMDPRRKSLDGAKLENGSATLRKKAEEDLKAVIAQFDVQPSEPAPAPAPVLNV-------DPVEPASKRKKL-SRLEERRAARVAAASDGGAS-GSVQAQGSATNRRVLIEREVLVYLAETEQVEVDDFNVLGFWNRRGTDSVCSTTGNVTSPAEMPYLAFIARLFLGIEASSCQAE 759
BLAST of mRNA_H-elongata_contig170591.4367.1 vs. uniprot
Match: A0A6H5KFJ9_9PHAE (Fanconi-associated nuclease n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFJ9_9PHAE) HSP 1 Score: 94.4 bits (233), Expect = 5.650e-19 Identity = 72/189 (38.10%), Postives = 102/189 (53.97%), Query Frame = -2
Query: 21 LDKKGLGKANMALERICALLDPRRKKCSKDHIINGSPALHAAAIEDVKMVAKTFVKATAGSASSTXXXXXXXXXXXXXEPTQLEPKRQKVGSDLEERRHARLAKSKAVTASRTSSVGPATAVKRRAIIERELRMYVA*DPHRKEDDFSLLDFWLRRSKPSTCAETGEVEAG--LPSLVLIARLYHGIES 581
+ +K + KA +ER+ AL+DPRRK + + + NGS L A ED+K V F + AS+ +P + PKR+K+ S LEERR AR+A + V AS S +A RR +IER++ +Y+A D+F +L W RR S CA TG+V + +P L IARLY GIE+
Sbjct: 550 MGEKQVEKAVQQVERLSALMDPRRKSLNGEQLENGSAHLRKRAEEDLKAVIAQFDVQPSEPASAPAPVLNV-------DPVEPAPKRKKL-SRLEERRGARVAAASGVGAS-GSVQAQGSATNRRVLIERDVLVYLAEKEQVDVDEFKVLGSWSRRGTDSVCATTGQVTSPTEMPYLAFIARLYLGIEA 729
BLAST of mRNA_H-elongata_contig170591.4367.1 vs. uniprot
Match: A0A6H5KDJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDJ6_9PHAE) HSP 1 Score: 90.9 bits (224), Expect = 7.430e-18 Identity = 75/196 (38.27%), Postives = 98/196 (50.00%), Query Frame = -2
Query: 3 LDKKGLGKANMALERICALLDPRRKKCSKDHIINGSPALHAAAIEDVKMVAKTFVKATAGSASSTXXXXXXXXXXXXXEPTQLEPKRQKVGSDLEERRHARLAKSKAVTASRTSSVGPATAVK-RRAIIERELRMYVA*DPHRKEDDFSLLDFWLRRSKPSTCAETGEVEAG--LPSLVLIARLYHGIESTSCQAE 581
+++KG+GKA +ER+ ALLDPRRK + NG L AA D+K TF TA S T +P + K++K S +EE T V P T V R +IERE+ +Y+A P D F+L+ FW RR S C TG+V A +P L IARL+ GIE+TSCQAE
Sbjct: 269 MEEKGVGKALQRVERLSALLDPRRKDLDATQVGNGDEDLRIAAEADLKKFIATF---TAESVPPTPAPAPVVDV----QPAEPALKKKKF-SRIEEXXXXXXXXXXXXXXXXT--VAPQTPVTGRHVLIEREVLVYLAEQPQVDVDGFNLVGFWNRRGTNSVCPTTGKVTAPAEMPYLAFIARLHLGIEATSCQAE 454
BLAST of mRNA_H-elongata_contig170591.4367.1 vs. uniprot
Match: A0A6H5KJT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJT6_9PHAE) HSP 1 Score: 77.4 bits (189), Expect = 1.010e-13 Identity = 53/117 (45.30%), Postives = 72/117 (61.54%), Query Frame = -2
Query: 3 EPTQLEPKRQKVGSDLEERRHARLAKSKAVTASRTSSVGPATAVKRRAIIERELRMYVA*DPHRKEDDFSLLDFWLRRSKPSTCAETGEVE--AGLPSLVLIARLYHGIESTSCQAE 347
+P + KR+K+ S LEERR AR+A + AS S +A RR +IERE+ +Y+A + DDF++L FW RR S C+ TG V A +P L IARL+ GIE++SCQAE
Sbjct: 80 DPVEPASKRKKL-SRLEERRAARVAAASDGGAS-GSVQAQGSATNRRVLIEREVLVYLAETEQVEVDDFNVLGFWNRRGTDSVCSTTGNVTSPAEMPYLAFIARLFLGIEASSCQAE 194
BLAST of mRNA_H-elongata_contig170591.4367.1 vs. uniprot
Match: A0A6H5KAS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS2_9PHAE) HSP 1 Score: 57.4 bits (137), Expect = 2.560e-6 Identity = 67/191 (35.08%), Postives = 85/191 (44.50%), Query Frame = -2
Query: 3 KKGLGKANMALERICALLDPRRKKCSKDHIINGSPALHAAAIEDVKMVAKTFVKATAGSASSTXXXXXXXXXXXXXEPTQLEPKRQKVGSDLEERRHARLAKSKAVTASRTSSVGPATAVKRRAIIERELRMYVA*DPHRKEDDFSLLDFWLRRSKPSTCAETGEVEAGLPSLVLIARLYHGIESTSCQAE 575
KKG+G A +A ER+ AL+DPRRK D + NGS L A +D+K V F G ++ + XXXXXXXXX P + PKR+ V +RL + TSSV P T K ++ AE +P L IARLY GIE+TSCQAE
Sbjct: 237 KKGVGSAQVAAERLSALMDPRRKLLGSDQLENGSADLSKKAEDDLKAVIAKF---DVGPSTESTAAPXXXXXXXXXXPAEPAPKRKTV---------SRLERG-------TSSVSPTT------------------------------------GKVTSPAE-------MPYLAFIARLYLGIEATSCQAE 365 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig170591.4367.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig170591.4367.1 >prot_H-elongata_contig170591.4367.1 ID=prot_H-elongata_contig170591.4367.1|Name=mRNA_H-elongata_contig170591.4367.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=130bp MIARRFTAVAGPTEEVRLAVTALDLARRACRLSSRSDPTFCLLGSSWVGSback to top mRNA from alignment at H-elongata_contig170591:355..942+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig170591.4367.1 ID=mRNA_H-elongata_contig170591.4367.1|Name=mRNA_H-elongata_contig170591.4367.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=588bp|location=Sequence derived from alignment at H-elongata_contig170591:355..942+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig170591:355..942+ >mRNA_H-elongata_contig170591.4367.1 ID=mRNA_H-elongata_contig170591.4367.1|Name=mRNA_H-elongata_contig170591.4367.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=780bp|location=Sequence derived from alignment at H-elongata_contig170591:355..942+ (Himanthalia elongata Himel1 dioecious)back to top |