mRNA_H-elongata_contig170591.4367.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig170591.4367.1
Unique NamemRNA_H-elongata_contig170591.4367.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig170591.4367.1 vs. uniprot
Match: A0A6H5KAN7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAN7_9PHAE)

HSP 1 Score: 217 bits (553), Expect = 4.040e-65
Identity = 136/195 (69.74%), Postives = 154/195 (78.97%), Query Frame = -2
Query:    3 SRLDKKGLGKANMALERICALLDPRRKKCSKDHIINGSPALHAAAIEDVKMVAKTFVKATAGSASSTXXXXXXXXXXXXXEPTQLEPKRQKVGSDLEERRHARLAKSKAVTASRTSSVGPATAVKRRAIIERELRMYVA*DPHRKEDDFSLLDFWLRRSKPSTCAETGEVEAGLPSLVLIARLYHGIESTSCQAE 587
            SR++KK LG A M LERICALLDPRRK CS +H++NGS  L A+AI DVK VAKTF +A  GSASS XXXXXXXXXXXX +P    PK+QKV SDLEERR  RLAKSKA +A R +    +TA +R AI+ERELRMY+A DP  +E DFSLL+FW RRSKP TCAETGEVE GLP L LIARL+HGIESTSCQAE
Sbjct:  242 SRMEKKELGAARMPLERICALLDPRRKDCSDEHLVNGSADLKASAIADVKSVAKTFAEADLGSASSXXXXXXXXXXXXXNQPA---PKKQKVLSDLEERRLQRLAKSKAASAGRAAPAAVSTA-RRGAIVERELRMYLAEDPAEEEYDFSLLEFWQRRSKPRTCAETGEVEPGLPHLALIARLFHGIESTSCQAE 432          
BLAST of mRNA_H-elongata_contig170591.4367.1 vs. uniprot
Match: A0A6H5KJ52_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ52_9PHAE)

HSP 1 Score: 217 bits (553), Expect = 8.990e-63
Identity = 136/195 (69.74%), Postives = 154/195 (78.97%), Query Frame = -2
Query:    3 SRLDKKGLGKANMALERICALLDPRRKKCSKDHIINGSPALHAAAIEDVKMVAKTFVKATAGSASSTXXXXXXXXXXXXXEPTQLEPKRQKVGSDLEERRHARLAKSKAVTASRTSSVGPATAVKRRAIIERELRMYVA*DPHRKEDDFSLLDFWLRRSKPSTCAETGEVEAGLPSLVLIARLYHGIESTSCQAE 587
            SR++KK LG A M LERICALLDPRRK CS +H++NGS  L A+AI DVK VAKTF +A  GSASS XXXXXXXXXXXX +P    PK+QKV SDLEERR  RLAKSKA +A R +    +TA +R AI+ERELRMY+A DP  +E DFSLL+FW RRSKP TCAETGEVE GLP L LIARL+HGIESTSCQAE
Sbjct:  570 SRMEKKELGAARMPLERICALLDPRRKDCSDEHLVNGSADLKASAIADVKSVAKTFAEADLGSASSXXXXXXXXXXXXXNQPA---PKKQKVLSDLEERRLQRLAKSKAASAGRAAPAAVSTA-RRGAIVERELRMYLAEDPAEEEYDFSLLEFWQRRSKPRTCAETGEVEPGLPHLALIARLFHGIESTSCQAE 760          
BLAST of mRNA_H-elongata_contig170591.4367.1 vs. uniprot
Match: A0A6H5JGG8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG8_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 2.090e-25
Identity = 77/196 (39.29%), Postives = 110/196 (56.12%), Query Frame = -2
Query:    3 RLDKKGLGKANMALERICALLDPRRKKCSKDHIINGSPALHAAAIEDVKMVAKTFVKATAGSASSTXXXXXXXXXXXXXEPTQLEPKRQKVGSDLEERRHARLAKSKAVTASRTSSVGPATAVKRRAIIERELRMYVA*DPHRKEDDFSLLDFWLRRSKPSTCAETGEVE--AGLPSLVLIARLYHGIESTSCQAE 584
            ++ +KG+G A +A+ER+ AL+DPRRK    D + NGS  L   A +D+K V   F    A +A +              +P +  PK++K+ S LEERR AR+A +        S    + +  RR +IERE+ +Y+A +P    D F++L +W RR   S  A TG+V   A +P L  IARLY GIE+TSCQAE
Sbjct:  584 KMREKGMGSAQVAVERLSALMDPRRKSLDSDQLENGSADLRKKAEDDLKAVIAKFDVGPATAAPAPAPVMNL-------DPVEPAPKKKKL-SRLEERRAARVAAATTGGDETGSLEDQSPSTTRRVLIEREVLVYLAENPQLDVDGFNVLGYWNRRGTDSVSATTGKVTSPAEMPYLAFIARLYLGIEATSCQAE 771          
BLAST of mRNA_H-elongata_contig170591.4367.1 vs. uniprot
Match: A0A6H5JTB8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB8_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 9.190e-23
Identity = 76/196 (38.78%), Postives = 108/196 (55.10%), Query Frame = -2
Query:    3 RLDKKGLGKANMALERICALLDPRRKKCSKDHIINGSPALHAAAIEDVKMVAKTFVKATAGSASSTXXXXXXXXXXXXXEPTQLEPKRQKVGSDLEERRHARLAKSKAVTASRTSSVGPATAVKRRAIIERELRMYVA*DPHRKEDDFSLLDFWLRRSKPSTCAETGEVE--AGLPSLVLIARLYHGIESTSCQAE 584
            ++ +KG+G A +A+ER+ AL+DPR +    D + NGS  L   A +D+K V   F    A +A +              EP    PK++K+ S LEERR AR+A +        S    + +  RR +IERE+ +Y+A +P    D F++L +W RR   S  A TG+V   A +P L  IARLY GIE+TSCQAE
Sbjct:  389 KMREKGVGSAQVAVERLSALMDPRLRSLDSDQLENGSADLRKKAEDDLKAVIAKFDVGPATAAPAPAPVMNLDRV----EPA---PKKKKL-SRLEERRAARVAAATTGGDETGSLEDQSPSTTRRVLIEREVLVYLAENPQLDVDGFNVLGYWNRRGTDSVSATTGKVTSPAEMPYLAFIARLYLGIEATSCQAE 576          
BLAST of mRNA_H-elongata_contig170591.4367.1 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 3.390e-22
Identity = 77/195 (39.49%), Postives = 107/195 (54.87%), Query Frame = -2
Query:    3 LDKKGLGKANMALERICALLDPRRKKCSKDHIINGSPALHAAAIEDVKMVAKTFVKATAGSASSTXXXXXXXXXXXXXEPTQLEPKRQKVGSDLEERRHARLAKSKAVTASRTSSVGPATAVKRRAIIERELRMYVA*DPHRKEDDFSLLDFWLRRSKPSTCAETGEVE--AGLPSLVLIARLYHGIESTSCQAE 581
            +++K +GKA   +ER+ AL+DPRRK      + NGS  L   A ED+K V   F    +  A +              +P +   KR+K+ S LEERR AR+A +    AS  S     +A  RR +IERE+ +Y+A     + DDF++L FW RR   S C+ TG V   A +P L  IARL+ GIE++SCQAE
Sbjct:  574 MEEKQVGKAVQQVERLSALMDPRRKSLDGAKLENGSATLRKKAEEDLKAVIAQFDVQPSEPAPAPAPVLNV-------DPVEPASKRKKL-SRLEERRAARVAAASDGGAS-GSVQAQGSATNRRVLIEREVLVYLAETEQVEVDDFNVLGFWNRRGTDSVCSTTGNVTSPAEMPYLAFIARLFLGIEASSCQAE 759          
BLAST of mRNA_H-elongata_contig170591.4367.1 vs. uniprot
Match: A0A6H5KFJ9_9PHAE (Fanconi-associated nuclease n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFJ9_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 5.650e-19
Identity = 72/189 (38.10%), Postives = 102/189 (53.97%), Query Frame = -2
Query:   21 LDKKGLGKANMALERICALLDPRRKKCSKDHIINGSPALHAAAIEDVKMVAKTFVKATAGSASSTXXXXXXXXXXXXXEPTQLEPKRQKVGSDLEERRHARLAKSKAVTASRTSSVGPATAVKRRAIIERELRMYVA*DPHRKEDDFSLLDFWLRRSKPSTCAETGEVEAG--LPSLVLIARLYHGIES 581
            + +K + KA   +ER+ AL+DPRRK  + + + NGS  L   A ED+K V   F    +  AS+              +P +  PKR+K+ S LEERR AR+A +  V AS  S     +A  RR +IER++ +Y+A       D+F +L  W RR   S CA TG+V +   +P L  IARLY GIE+
Sbjct:  550 MGEKQVEKAVQQVERLSALMDPRRKSLNGEQLENGSAHLRKRAEEDLKAVIAQFDVQPSEPASAPAPVLNV-------DPVEPAPKRKKL-SRLEERRGARVAAASGVGAS-GSVQAQGSATNRRVLIERDVLVYLAEKEQVDVDEFKVLGSWSRRGTDSVCATTGQVTSPTEMPYLAFIARLYLGIEA 729          
BLAST of mRNA_H-elongata_contig170591.4367.1 vs. uniprot
Match: A0A6H5KDJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDJ6_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 7.430e-18
Identity = 75/196 (38.27%), Postives = 98/196 (50.00%), Query Frame = -2
Query:    3 LDKKGLGKANMALERICALLDPRRKKCSKDHIINGSPALHAAAIEDVKMVAKTFVKATAGSASSTXXXXXXXXXXXXXEPTQLEPKRQKVGSDLEERRHARLAKSKAVTASRTSSVGPATAVK-RRAIIERELRMYVA*DPHRKEDDFSLLDFWLRRSKPSTCAETGEVEAG--LPSLVLIARLYHGIESTSCQAE 581
            +++KG+GKA   +ER+ ALLDPRRK      + NG   L  AA  D+K    TF   TA S   T             +P +   K++K  S +EE                T  V P T V  R  +IERE+ +Y+A  P    D F+L+ FW RR   S C  TG+V A   +P L  IARL+ GIE+TSCQAE
Sbjct:  269 MEEKGVGKALQRVERLSALLDPRRKDLDATQVGNGDEDLRIAAEADLKKFIATF---TAESVPPTPAPAPVVDV----QPAEPALKKKKF-SRIEEXXXXXXXXXXXXXXXXT--VAPQTPVTGRHVLIEREVLVYLAEQPQVDVDGFNLVGFWNRRGTNSVCPTTGKVTAPAEMPYLAFIARLHLGIEATSCQAE 454          
BLAST of mRNA_H-elongata_contig170591.4367.1 vs. uniprot
Match: A0A6H5KJT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJT6_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 1.010e-13
Identity = 53/117 (45.30%), Postives = 72/117 (61.54%), Query Frame = -2
Query:    3 EPTQLEPKRQKVGSDLEERRHARLAKSKAVTASRTSSVGPATAVKRRAIIERELRMYVA*DPHRKEDDFSLLDFWLRRSKPSTCAETGEVE--AGLPSLVLIARLYHGIESTSCQAE 347
            +P +   KR+K+ S LEERR AR+A +    AS  S     +A  RR +IERE+ +Y+A     + DDF++L FW RR   S C+ TG V   A +P L  IARL+ GIE++SCQAE
Sbjct:   80 DPVEPASKRKKL-SRLEERRAARVAAASDGGAS-GSVQAQGSATNRRVLIEREVLVYLAETEQVEVDDFNVLGFWNRRGTDSVCSTTGNVTSPAEMPYLAFIARLFLGIEASSCQAE 194          
BLAST of mRNA_H-elongata_contig170591.4367.1 vs. uniprot
Match: A0A6H5KAS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS2_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 2.560e-6
Identity = 67/191 (35.08%), Postives = 85/191 (44.50%), Query Frame = -2
Query:    3 KKGLGKANMALERICALLDPRRKKCSKDHIINGSPALHAAAIEDVKMVAKTFVKATAGSASSTXXXXXXXXXXXXXEPTQLEPKRQKVGSDLEERRHARLAKSKAVTASRTSSVGPATAVKRRAIIERELRMYVA*DPHRKEDDFSLLDFWLRRSKPSTCAETGEVEAGLPSLVLIARLYHGIESTSCQAE 575
            KKG+G A +A ER+ AL+DPRRK    D + NGS  L   A +D+K V   F     G ++ +    XXXXXXXXX P +  PKR+ V         +RL +        TSSV P T                                     K ++ AE       +P L  IARLY GIE+TSCQAE
Sbjct:  237 KKGVGSAQVAAERLSALMDPRRKLLGSDQLENGSADLSKKAEDDLKAVIAKF---DVGPSTESTAAPXXXXXXXXXXPAEPAPKRKTV---------SRLERG-------TSSVSPTT------------------------------------GKVTSPAE-------MPYLAFIARLYLGIEATSCQAE 365          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig170591.4367.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5KAN7_9PHAE4.040e-6569.74Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KJ52_9PHAE8.990e-6369.74Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JGG8_9PHAE2.090e-2539.29Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ec... [more]
A0A6H5JTB8_9PHAE9.190e-2338.78Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JRT6_9PHAE3.390e-2239.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFJ9_9PHAE5.650e-1938.10Fanconi-associated nuclease n=1 Tax=Ectocarpus sp.... [more]
A0A6H5KDJ6_9PHAE7.430e-1838.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJT6_9PHAE1.010e-1345.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAS2_9PHAE2.560e-635.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig170591contigH-elongata_contig170591:355..942 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size590
Cds size390
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929993.9710712-UTR-H-elongata_contig170591:354..5521622929993.9710712-UTR-H-elongata_contig170591:354..552Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig170591 355..552 +
1691679238.5353355-UTR-H-elongata_contig170591:354..5521691679238.5353355-UTR-H-elongata_contig170591:354..552Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig170591 355..552 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929993.9870584-CDS-H-elongata_contig170591:552..9421622929993.9870584-CDS-H-elongata_contig170591:552..942Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig170591 553..942 +
1691679238.5430272-CDS-H-elongata_contig170591:552..9421691679238.5430272-CDS-H-elongata_contig170591:552..942Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig170591 553..942 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig170591.4367.1prot_H-elongata_contig170591.4367.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig170591 553..942 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig170591.4367.1

>prot_H-elongata_contig170591.4367.1 ID=prot_H-elongata_contig170591.4367.1|Name=mRNA_H-elongata_contig170591.4367.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=130bp
MIARRFTAVAGPTEEVRLAVTALDLARRACRLSSRSDPTFCLLGSSWVGS
PPPLLPPPLAPPAVEEADPAVAFTNVFATILTSSMAAACRAGLPLMIWSF
EHFFRLGSSSAQMRSRAMLAFPSPFLSNLE
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mRNA from alignment at H-elongata_contig170591:355..942+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig170591.4367.1 ID=mRNA_H-elongata_contig170591.4367.1|Name=mRNA_H-elongata_contig170591.4367.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=588bp|location=Sequence derived from alignment at H-elongata_contig170591:355..942+ (Himanthalia elongata Himel1 dioecious)
CTTTCCGCCTGGCAGCTCGTAGACTCGATCCCGTGGTATAGGCGAGCAAT GAGCACCAAGGACGGCAGACCTGCTTCGACTTCGCCCGTCTCGGCGCATG TGCTGGGCTTGCTTCTGCGCAGCCAGAAGTCGAGAAGCGAGAAGTCGTCC TCTTTCCGGTGAGGGTCTTACGCCACGTACATCCGCAGCTCTCGCTCAAT GATCGCGCGCCGCTTCACTGCTGTAGCTGGCCCCACCGAGGAAGTTCGAC TGGCGGTAACTGCCTTGGACTTGGCGAGACGCGCGTGTCGCCTCTCCTCT AGGTCCGACCCGACTTTCTGTCTCTTGGGCTCAAGCTGGGTGGGTTCGCC TCCGCCGCTGCTGCCGCCGCCACTTGCACCCCCAGCGGTTGAGGAAGCGG ACCCGGCCGTCGCCTTCACGAACGTCTTCGCGACCATTTTGACATCCTCG ATGGCAGCGGCGTGCAGAGCTGGGCTGCCGTTGATGATATGGTCTTTTGA GCACTTCTTTCGCCTCGGGTCCAGCAGCGCACAGATGCGCTCCAGGGCCA TGTTGGCCTTCCCAAGCCCTTTCTTGTCCAACCTCGAG
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Coding sequence (CDS) from alignment at H-elongata_contig170591:355..942+

>mRNA_H-elongata_contig170591.4367.1 ID=mRNA_H-elongata_contig170591.4367.1|Name=mRNA_H-elongata_contig170591.4367.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=780bp|location=Sequence derived from alignment at H-elongata_contig170591:355..942+ (Himanthalia elongata Himel1 dioecious)
ATGATCGCGCGCCGCTTCACTGCTGTAGCTGGCCCCACCGAGGAAGTTCG
ACTGGCGGTAACTGCCTTGGACTTGGCGAGACGCGCGTGTCGCCTCTCCT
CTAGGTCCGACCCGACTTTCTGTCTCTTGGGCTCAAGCTGGGTGGGTTCG
CCTCCGCCGCTGCTGCCGCCGCCACTTGCACCCCCAGCGGTTGAGGAAGC
GGACCCGGCCGTCGCCTTCACGAACGTCTTCGCGACCATTTTGACATCCT
CGATGGCAGCGGCGTGCAGAGCTGGGCTGCCGTTGATGATATGGTCTTTT
GAGCACTTCTTTCGCCTCGGGTCCAGCAGCGCACAGATGCGCTCCAGGGC
CATGTTGGCCTTCCCAAGCCCTTTCTTGTCCAACCTCGAGATGATCGCGC
GCCGCTTCACTGCTGTAGCTGGCCCCACCGAGGAAGTTCGACTGGCGGTA
ACTGCCTTGGACTTGGCGAGACGCGCGTGTCGCCTCTCCTCTAGGTCCGA
CCCGACTTTCTGTCTCTTGGGCTCAAGCTGGGTGGGTTCGCCTCCGCCGC
TGCTGCCGCCGCCACTTGCACCCCCAGCGGTTGAGGAAGCGGACCCGGCC
GTCGCCTTCACGAACGTCTTCGCGACCATTTTGACATCCTCGATGGCAGC
GGCGTGCAGAGCTGGGCTGCCGTTGATGATATGGTCTTTTGAGCACTTCT
TTCGCCTCGGGTCCAGCAGCGCACAGATGCGCTCCAGGGCCATGTTGGCC
TTCCCAAGCCCTTTCTTGTCCAACCTCGAG
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