mRNA_H-elongata_contig17005.4342.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17005.4342.1
Unique NamemRNA_H-elongata_contig17005.4342.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig17005.4342.1 vs. uniprot
Match: D8LFZ2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFZ2_ECTSI)

HSP 1 Score: 220 bits (561), Expect = 7.980e-66
Identity = 111/114 (97.37%), Postives = 112/114 (98.25%), Query Frame = 1
Query:    4 GRFGLKLLVSNSMAGTLIGKGGTRICEIKDECLADIKVTPNGRFYPGTHERVVLVVGEPSSVQMACDRIVTTIYTAADTSLDITQRVLIPDAASGLIIGHDGVRLGDLRHEAGV 345
            GRFGLKLLVSNSMAGTLIGKGGTRICEIKDECLADIKVTPNGRFYPGTHERVVLVVGEP SVQMACDRIVTTIYTAADTSLDITQRVLIPDAASGLIIGHDGVRLGDLR +AGV
Sbjct:   65 GRFGLKLLVSNSMAGTLIGKGGTRICEIKDECLADIKVTPNGRFYPGTHERVVLVVGEPGSVQMACDRIVTTIYTAADTSLDITQRVLIPDAASGLIIGHDGVRLGDLRQQAGV 178          
BLAST of mRNA_H-elongata_contig17005.4342.1 vs. uniprot
Match: A0A836CIW2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIW2_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 2.570e-16
Identity = 50/126 (39.68%), Postives = 74/126 (58.73%), Query Frame = 1
Query:   16 LKLLVSNSMAGTLIGKGGTRICEIKDECLADIKVTPNGRFYPGTHERVVLVVGEPSSVQMACDRIVTTIY-----------------TAADTSLDITQRVLIPDAASGLIIGHDGVRLGDLRHEAG 342
            LKLLVSN+MAG+LIGK G  I  ++ +  A +KV+ +G + PGT +RVVLV G+   V+ AC  ++ T++                 T  D +L++TQR+LIP +A GL+IG  G  +  L   +G
Sbjct:   50 LKLLVSNNMAGSLIGKAGQTIQNVQLQSGAVVKVSTSGMYLPGTQDRVVLVTGDLPRVKAACALVLHTVHEQGRDRDCGVPAPLDIGTERD-ALEVTQRLLIPASAGGLVIGRGGSNIKGLSESSG 174          
BLAST of mRNA_H-elongata_contig17005.4342.1 vs. uniprot
Match: A0A6H5KLG6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLG6_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 3.160e-14
Identity = 44/123 (35.77%), Postives = 67/123 (54.47%), Query Frame = 1
Query:   16 LKLLVSNSMAGTLIGKGGTRICEIKDECLADIKVTPNGRFYPGTHERVVLVVGEPSSVQMACDRIVTTIYTAADT--------------SLDITQRVLIPDAASGLIIGHDGVRLGDLRHEAG 342
            +K LV N  AG+LIGK G  I +I+ +    +++  +G +YPGT ER VLV GE   V+ AC  I+ T++   +               ++++TQR+LIP  A GL+IG  G  +  L   +G
Sbjct:   91 IKFLVPNFQAGSLIGKKGATIKDIQLKASCMVRIATSGMYYPGTMERAVLVAGETEGVKQACGLILHTLHVPDNNESGCAKLVSEEKAEAIEVTQRLLIPLTAGGLVIGRRGANIAALLAASG 213          
BLAST of mRNA_H-elongata_contig17005.4342.1 vs. uniprot
Match: D8LGY3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGY3_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 4.760e-14
Identity = 44/123 (35.77%), Postives = 66/123 (53.66%), Query Frame = 1
Query:   16 LKLLVSNSMAGTLIGKGGTRICEIKDECLADIKVTPNGRFYPGTHERVVLVVGEPSSVQMACDRIVTTIYTAADT--------------SLDITQRVLIPDAASGLIIGHDGVRLGDLRHEAG 342
            +K LV N  AG+LIGK G  I +I+ +    + +  +G +YPGT ER VLV GE   V+ AC  I+ T++   +               ++++TQR+LIP  A GL+IG  G  +  L   +G
Sbjct:   87 IKFLVPNFQAGSLIGKKGATIKDIQLKASCMVGIATSGMYYPGTMERAVLVAGETEGVKQACGLILHTLHVPDNNESGCAKLVSQEKAEAIEVTQRLLIPLTAGGLVIGRRGANIAALLAASG 209          
BLAST of mRNA_H-elongata_contig17005.4342.1 vs. uniprot
Match: A0A1E7FL20_9STRA (KH_1-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FL20_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 9.530e-14
Identity = 42/130 (32.31%), Postives = 70/130 (53.85%), Query Frame = 1
Query:   16 LKLLVSNSMAGTLIGKGGTRICEIKDECLADIKVTPNGRFYPGTHERVVLVVGEPSSVQMACDRIVTTIYTAAD--------------------TSLDITQRVLIPDAASGLIIGHDGVRLGDLRHEAGV 345
            +KLLVSN++AG++IG+ G  I E++ +  A IK++  G +YPGT +RV LV G+ S+V++A   ++   Y   +                    T  D   R+L+P ++ G+IIG  G  +  +   +GV
Sbjct:   35 IKLLVSNNVAGSIIGRAGQTISELQTQSSARIKLSQTGDYYPGTQDRVCLVQGQLSTVKLAVQLLLERFYMLQEQQHTQYLAWQPKNDEHAPTPTGFDFVVRLLVPSSSCGMIIGKAGANIKHMEESSGV 164          
BLAST of mRNA_H-elongata_contig17005.4342.1 vs. uniprot
Match: A0A183JSA3_9TREM (Uncharacterized protein n=1 Tax=Schistosoma curassoni TaxID=6186 RepID=A0A183JSA3_9TREM)

HSP 1 Score: 73.2 bits (178), Expect = 1.440e-13
Identity = 43/119 (36.13%), Postives = 66/119 (55.46%), Query Frame = 1
Query:    1 SGRFGLKLLVSNSMAGTLIGKGGTRICEIKDECLADIKVTPNGRFYPGTHERVVLVVGEPSSVQMACDRIVTTIYTAAD----TSLDITQRVLIPDAASGLIIGHDGVRLGDLRHEAGV 345
            SG    K+LV +  AG +IGKGG  I EI+++  A +K++    FYPGT ERV L+VG   S+      I   IY   +    T  +   ++L+P++ +G+IIG  G  + +L+   GV
Sbjct:    9 SGNVHFKILVPSIAAGAIIGKGGEAITEIQNQTSAKVKMSKANAFYPGTTERVCLIVGTIESILRVFQYISEKIYEKPESVPKTGSEGRVKILVPNSTAGMIIGKGGSFIKELKDTTGV 127          
BLAST of mRNA_H-elongata_contig17005.4342.1 vs. uniprot
Match: A0A7S3MF91_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MF91_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 1.880e-13
Identity = 45/130 (34.62%), Postives = 74/130 (56.92%), Query Frame = 1
Query:   16 LKLLVSNSMAGTLIGKGGTRICEIKDECLADIKVTPNGRFYPGTHERVVLVVGEPSSVQMACDRI---VTTIYTAADTS------------------LDITQRVLIPDAASGLIIGHDGVRLGDLRHEAG 342
            +K+L+S+S+ G+LIG+GG  I E+ D   A I+V+ N  +YPGT +RVVL+VGE  +V++A   I   +  I +AA+                    ++++ ++ IP AA GLI+G  G  +  +  E+G
Sbjct:   12 IKVLLSHSLTGSLIGRGGKAIQELNDISNAKIRVSANTEYYPGTSDRVVLIVGELQAVKLAHTLIWEMIALISSAANPKEIEWNPREALGILGHNDGVEVSGKITIPAAAGGLILGKGGANIQSISEESG 141          
BLAST of mRNA_H-elongata_contig17005.4342.1 vs. uniprot
Match: A0A6P8IIV0_ACTTE (RNA-binding protein Nova-1-like isoform X1 n=2 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8IIV0_ACTTE)

HSP 1 Score: 74.3 bits (181), Expect = 3.130e-13
Identity = 39/120 (32.50%), Postives = 68/120 (56.67%), Query Frame = 1
Query:   16 LKLLVSNSMAGTLIGKGGTRICEIKDECLADIKVTPNGRFYPGTHERVVLVVGEPSSVQMACDRIVTTIYT---AADTSLDIT--------QRVLIPDAASGLIIGHDGVRLGDLRHEAG 342
            LK+LV N  AG++IGKGG  I +++    A IK++PN  +YPGT ER+ L++GE  ++    D ++  I      A  + +IT         ++++P++ +G+IIG  G  +  +  + G
Sbjct:   53 LKILVPNYAAGSIIGKGGQNIAQVQQSTGARIKLSPNNHYYPGTQERIGLIIGEVDTIITMLDFVIDKIRQEPQGAKVNSNITFDRERAKQMKIVVPNSTAGMIIGKGGTAIKSISEQTG 172          
BLAST of mRNA_H-elongata_contig17005.4342.1 vs. uniprot
Match: T2M3N5_HYDVU (RNA-binding protein Nova-1-like n=1 Tax=Hydra vulgaris TaxID=6087 RepID=T2M3N5_HYDVU)

HSP 1 Score: 73.6 bits (179), Expect = 5.980e-13
Identity = 39/115 (33.91%), Postives = 65/115 (56.52%), Query Frame = 1
Query:   16 LKLLVSNSMAGTLIGKGGTRICEIKDECLADIKVTPNGRFYPGTHERVVLVVGEPSSVQMACDRIVTTIYTAA--------DTSLDITQRVLIPDAASGLIIGHDGVRLGDLRHE 336
            LK+L+ N  AG +IGKGG  I E++    A I+++PNG FYPGT ER+V++ G+ S +    + I+  ++  +        D       +++ P+A +GL+IG  G  +  L+ E
Sbjct:   47 LKVLIPNYAAGAIIGKGGANIGELQSRYGAKIRLSPNGEFYPGTEERIVILTGDVSQIIDLHNYIIDKVHADSMEGPKGMRDEDRGQKVKIVCPNATAGLVIGRGGSTIKSLQEE 161          
BLAST of mRNA_H-elongata_contig17005.4342.1 vs. uniprot
Match: A7SKT2_NEMVE (Predicted protein n=4 Tax=Nematostella vectensis TaxID=45351 RepID=A7SKT2_NEMVE)

HSP 1 Score: 72.4 bits (176), Expect = 1.500e-12
Identity = 38/120 (31.67%), Postives = 68/120 (56.67%), Query Frame = 1
Query:   16 LKLLVSNSMAGTLIGKGGTRICEIKDECLADIKVTPNGRFYPGTHERVVLVVGEPSSVQMACDRIVTTIYTAAD---TSLDIT--------QRVLIPDAASGLIIGHDGVRLGDLRHEAG 342
            LK+LV N  AG++IGKGG  I +++    A IK++PN ++YPGT ER+ L++GE  ++    D ++  I         S+ I+         ++++P++ +G+IIG  G  +  +  + G
Sbjct:   48 LKILVPNYAAGSIIGKGGQNIAQVQQTTGARIKLSPNNQYYPGTQERIGLIMGEVENIVQMLDFVIDKIRQEPQGIKASMSISFDRERAKQMKIIVPNSTAGMIIGKAGSAIKSISEQTG 167          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17005.4342.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFZ2_ECTSI7.980e-6697.37Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CIW2_9STRA2.570e-1639.68Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5KLG6_9PHAE3.160e-1435.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LGY3_ECTSI4.760e-1435.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1E7FL20_9STRA9.530e-1432.31KH_1-domain-containing protein n=1 Tax=Fragilariop... [more]
A0A183JSA3_9TREM1.440e-1336.13Uncharacterized protein n=1 Tax=Schistosoma curass... [more]
A0A7S3MF91_9STRA1.880e-1334.62Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A6P8IIV0_ACTTE3.130e-1332.50RNA-binding protein Nova-1-like isoform X1 n=2 Tax... [more]
T2M3N5_HYDVU5.980e-1333.91RNA-binding protein Nova-1-like n=1 Tax=Hydra vulg... [more]
A7SKT2_NEMVE1.500e-1231.67Predicted protein n=4 Tax=Nematostella vectensis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17005contigH-elongata_contig17005:969..2156 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score221.5
Seed ortholog evalue2.1e-55
Seed eggNOG ortholog2880.D8LFZ2
KEGG koko:K14944
EggNOG free text desc.RNA splicing
EggNOG OGsKOG2191@1,KOG2191@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03041
Hectar predicted targeting categoryother localisation
Exons2
Model size345
Cds size345
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929991.750849-CDS-H-elongata_contig17005:968..12171622929991.750849-CDS-H-elongata_contig17005:968..1217Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17005 969..1217 -
1691679237.6890402-CDS-H-elongata_contig17005:968..12171691679237.6890402-CDS-H-elongata_contig17005:968..1217Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17005 969..1217 -
1622929991.7647798-CDS-H-elongata_contig17005:2060..21561622929991.7647798-CDS-H-elongata_contig17005:2060..2156Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17005 2061..2156 -
1691679237.7081053-CDS-H-elongata_contig17005:2060..21561691679237.7081053-CDS-H-elongata_contig17005:2060..2156Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17005 2061..2156 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17005.4342.1prot_H-elongata_contig17005.4342.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17005 969..2156 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17005.4342.1

>prot_H-elongata_contig17005.4342.1 ID=prot_H-elongata_contig17005.4342.1|Name=mRNA_H-elongata_contig17005.4342.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=115bp
SGRFGLKLLVSNSMAGTLIGKGGTRICEIKDECLADIKVTPNGRFYPGTH
ERVVLVVGEPSSVQMACDRIVTTIYTAADTSLDITQRVLIPDAASGLIIG
HDGVRLGDLRHEAGV
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mRNA from alignment at H-elongata_contig17005:969..2156-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17005.4342.1 ID=mRNA_H-elongata_contig17005.4342.1|Name=mRNA_H-elongata_contig17005.4342.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1188bp|location=Sequence derived from alignment at H-elongata_contig17005:969..2156- (Himanthalia elongata Himel1 dioecious)
TCTGGAAGGTTTGGATTAAAGCTCCTTGTTTCGAACAGCATGGCCGGTAC TCTGATTGGCAAAGGTGGCACGAGGATCTGCGAGATAAAAGATGAGGTGA GCTGGCTTGCAGAGTAACCGCCGTCGCGTACGACGTGATTGATTTGGGCG AGCGACGACGTATTCATGTGTTTCAGATACAAAAGAGACCCCCACCGGTG AATGACTCTTTTGAAATTAATGGTGTTTGTTCTTTTGCCTCGCCCTGACC TTCCAGTTCAAATATATTTTAAGTCATTTTTCTCTCTCAAAATGTAAACG AAGTTATTTGCCTACCTCCACTCTTGTATATATCTGTTTTAGCTAGTCTG TACGGGTAATATTTAACGAGTAATAGATAAGGCGTCGGCGACAGTCTCAA CGAATTTCTAGAGCTAAGCTCTTGCGTAATGTCTTACGACGTTCAAGGTA CAAGGTACGTGACTCCTTTATCCTTTACTCCAGTTGTGGTCCATACTTTC TTCAACGGGGATGCTCTCTTAATTTACTGAGCCAAGCACGACATACGTCT CCCTTTCAAGTATCTCATGAAGTGCGTAGGATTTAATTATGACGGAAGCA TCTCGTAGCGTGCGGAACTGTATAATATCGTGCTCAAGACATGGTTGTCT CTTCTTTGCCCTTCTCGTGTGTGTGTGTATGGTGGGTTGTGTGTTTTTTA GTAACCAATGTTTCCTCCATGCAATTCTCCGGACGAGGAATATGCGCTCT CTTCCACTTGTTTTGTGAAAGTCGTCGAGTAATCCAGTAATCGAGTCAAG TCAAACCTTATCGCTCAGGTTCATAAGATAATGTCTGAAAACTCATAGGC CATCGTCTTGCTGCCCGCCCTTTGTCGTATTGCGATTTCTTAAAACAATT CTTGATCGCGAACATCAATCTCGTGGCCTGGAACACCAGTGTCTAGCCGA TATCAAGGTCACCCCGAATGGGCGCTTCTACCCAGGCACGCACGAACGCG TCGTCCTCGTTGTCGGGGAACCTAGCAGCGTTCAGATGGCGTGCGACCGG ATCGTCACCACCATTTACACCGCGGCCGATACAAGTTTGGACATCACCCA GAGGGTTCTTATTCCCGACGCTGCGAGCGGTCTAATTATCGGCCATGACG GAGTTAGGCTCGGGGATCTGCGCCACGAGGCCGGCGTC
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Coding sequence (CDS) from alignment at H-elongata_contig17005:969..2156-

>mRNA_H-elongata_contig17005.4342.1 ID=mRNA_H-elongata_contig17005.4342.1|Name=mRNA_H-elongata_contig17005.4342.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=690bp|location=Sequence derived from alignment at H-elongata_contig17005:969..2156- (Himanthalia elongata Himel1 dioecious)
TCTGGAAGGTTTGGATTAAAGCTCCTTGTTTCGAACAGCATGGCCGGTAC
TCTGATTGGCAAAGGTGGCACGAGGATCTGCGAGATAAAAGATGAGTCTG
GAAGGTTTGGATTAAAGCTCCTTGTTTCGAACAGCATGGCCGGTACTCTG
ATTGGCAAAGGTGGCACGAGGATCTGCGAGATAAAAGATGAGTGTCTAGC
CGATATCAAGGTCACCCCGAATGGGCGCTTCTACCCAGGCACGCACGAAC
GCGTCGTCCTCGTTGTCGGGGAACCTAGCAGCGTTCAGATGGCGTGCGAC
CGGATCGTCACCACCATTTACACCGCGGCCGATACAAGTTTGGACATCAC
CCAGAGGGTTCTTATTCCCGACGCTGCGAGCGGTCTAATTATCGGCCATG
ACGGAGTTAGGCTCGGGGATCTGCGCCACGAGGCCGGCGTCTGTCTAGCC
GATATCAAGGTCACCCCGAATGGGCGCTTCTACCCAGGCACGCACGAACG
CGTCGTCCTCGTTGTCGGGGAACCTAGCAGCGTTCAGATGGCGTGCGACC
GGATCGTCACCACCATTTACACCGCGGCCGATACAAGTTTGGACATCACC
CAGAGGGTTCTTATTCCCGACGCTGCGAGCGGTCTAATTATCGGCCATGA
CGGAGTTAGGCTCGGGGATCTGCGCCACGAGGCCGGCGTC
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