mRNA_H-elongata_contig17005.4342.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig17005.4342.1 vs. uniprot
Match: D8LFZ2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFZ2_ECTSI) HSP 1 Score: 220 bits (561), Expect = 7.980e-66 Identity = 111/114 (97.37%), Postives = 112/114 (98.25%), Query Frame = 1
Query: 4 GRFGLKLLVSNSMAGTLIGKGGTRICEIKDECLADIKVTPNGRFYPGTHERVVLVVGEPSSVQMACDRIVTTIYTAADTSLDITQRVLIPDAASGLIIGHDGVRLGDLRHEAGV 345
GRFGLKLLVSNSMAGTLIGKGGTRICEIKDECLADIKVTPNGRFYPGTHERVVLVVGEP SVQMACDRIVTTIYTAADTSLDITQRVLIPDAASGLIIGHDGVRLGDLR +AGV
Sbjct: 65 GRFGLKLLVSNSMAGTLIGKGGTRICEIKDECLADIKVTPNGRFYPGTHERVVLVVGEPGSVQMACDRIVTTIYTAADTSLDITQRVLIPDAASGLIIGHDGVRLGDLRQQAGV 178
BLAST of mRNA_H-elongata_contig17005.4342.1 vs. uniprot
Match: A0A836CIW2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIW2_9STRA) HSP 1 Score: 82.8 bits (203), Expect = 2.570e-16 Identity = 50/126 (39.68%), Postives = 74/126 (58.73%), Query Frame = 1
Query: 16 LKLLVSNSMAGTLIGKGGTRICEIKDECLADIKVTPNGRFYPGTHERVVLVVGEPSSVQMACDRIVTTIY-----------------TAADTSLDITQRVLIPDAASGLIIGHDGVRLGDLRHEAG 342
LKLLVSN+MAG+LIGK G I ++ + A +KV+ +G + PGT +RVVLV G+ V+ AC ++ T++ T D +L++TQR+LIP +A GL+IG G + L +G
Sbjct: 50 LKLLVSNNMAGSLIGKAGQTIQNVQLQSGAVVKVSTSGMYLPGTQDRVVLVTGDLPRVKAACALVLHTVHEQGRDRDCGVPAPLDIGTERD-ALEVTQRLLIPASAGGLVIGRGGSNIKGLSESSG 174
BLAST of mRNA_H-elongata_contig17005.4342.1 vs. uniprot
Match: A0A6H5KLG6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLG6_9PHAE) HSP 1 Score: 77.4 bits (189), Expect = 3.160e-14 Identity = 44/123 (35.77%), Postives = 67/123 (54.47%), Query Frame = 1
Query: 16 LKLLVSNSMAGTLIGKGGTRICEIKDECLADIKVTPNGRFYPGTHERVVLVVGEPSSVQMACDRIVTTIYTAADT--------------SLDITQRVLIPDAASGLIIGHDGVRLGDLRHEAG 342
+K LV N AG+LIGK G I +I+ + +++ +G +YPGT ER VLV GE V+ AC I+ T++ + ++++TQR+LIP A GL+IG G + L +G
Sbjct: 91 IKFLVPNFQAGSLIGKKGATIKDIQLKASCMVRIATSGMYYPGTMERAVLVAGETEGVKQACGLILHTLHVPDNNESGCAKLVSEEKAEAIEVTQRLLIPLTAGGLVIGRRGANIAALLAASG 213
BLAST of mRNA_H-elongata_contig17005.4342.1 vs. uniprot
Match: D8LGY3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGY3_ECTSI) HSP 1 Score: 75.9 bits (185), Expect = 4.760e-14 Identity = 44/123 (35.77%), Postives = 66/123 (53.66%), Query Frame = 1
Query: 16 LKLLVSNSMAGTLIGKGGTRICEIKDECLADIKVTPNGRFYPGTHERVVLVVGEPSSVQMACDRIVTTIYTAADT--------------SLDITQRVLIPDAASGLIIGHDGVRLGDLRHEAG 342
+K LV N AG+LIGK G I +I+ + + + +G +YPGT ER VLV GE V+ AC I+ T++ + ++++TQR+LIP A GL+IG G + L +G
Sbjct: 87 IKFLVPNFQAGSLIGKKGATIKDIQLKASCMVGIATSGMYYPGTMERAVLVAGETEGVKQACGLILHTLHVPDNNESGCAKLVSQEKAEAIEVTQRLLIPLTAGGLVIGRRGANIAALLAASG 209
BLAST of mRNA_H-elongata_contig17005.4342.1 vs. uniprot
Match: A0A1E7FL20_9STRA (KH_1-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FL20_9STRA) HSP 1 Score: 75.9 bits (185), Expect = 9.530e-14 Identity = 42/130 (32.31%), Postives = 70/130 (53.85%), Query Frame = 1
Query: 16 LKLLVSNSMAGTLIGKGGTRICEIKDECLADIKVTPNGRFYPGTHERVVLVVGEPSSVQMACDRIVTTIYTAAD--------------------TSLDITQRVLIPDAASGLIIGHDGVRLGDLRHEAGV 345
+KLLVSN++AG++IG+ G I E++ + A IK++ G +YPGT +RV LV G+ S+V++A ++ Y + T D R+L+P ++ G+IIG G + + +GV
Sbjct: 35 IKLLVSNNVAGSIIGRAGQTISELQTQSSARIKLSQTGDYYPGTQDRVCLVQGQLSTVKLAVQLLLERFYMLQEQQHTQYLAWQPKNDEHAPTPTGFDFVVRLLVPSSSCGMIIGKAGANIKHMEESSGV 164
BLAST of mRNA_H-elongata_contig17005.4342.1 vs. uniprot
Match: A0A183JSA3_9TREM (Uncharacterized protein n=1 Tax=Schistosoma curassoni TaxID=6186 RepID=A0A183JSA3_9TREM) HSP 1 Score: 73.2 bits (178), Expect = 1.440e-13 Identity = 43/119 (36.13%), Postives = 66/119 (55.46%), Query Frame = 1
Query: 1 SGRFGLKLLVSNSMAGTLIGKGGTRICEIKDECLADIKVTPNGRFYPGTHERVVLVVGEPSSVQMACDRIVTTIYTAAD----TSLDITQRVLIPDAASGLIIGHDGVRLGDLRHEAGV 345
SG K+LV + AG +IGKGG I EI+++ A +K++ FYPGT ERV L+VG S+ I IY + T + ++L+P++ +G+IIG G + +L+ GV
Sbjct: 9 SGNVHFKILVPSIAAGAIIGKGGEAITEIQNQTSAKVKMSKANAFYPGTTERVCLIVGTIESILRVFQYISEKIYEKPESVPKTGSEGRVKILVPNSTAGMIIGKGGSFIKELKDTTGV 127
BLAST of mRNA_H-elongata_contig17005.4342.1 vs. uniprot
Match: A0A7S3MF91_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MF91_9STRA) HSP 1 Score: 74.7 bits (182), Expect = 1.880e-13 Identity = 45/130 (34.62%), Postives = 74/130 (56.92%), Query Frame = 1
Query: 16 LKLLVSNSMAGTLIGKGGTRICEIKDECLADIKVTPNGRFYPGTHERVVLVVGEPSSVQMACDRI---VTTIYTAADTS------------------LDITQRVLIPDAASGLIIGHDGVRLGDLRHEAG 342
+K+L+S+S+ G+LIG+GG I E+ D A I+V+ N +YPGT +RVVL+VGE +V++A I + I +AA+ ++++ ++ IP AA GLI+G G + + E+G
Sbjct: 12 IKVLLSHSLTGSLIGRGGKAIQELNDISNAKIRVSANTEYYPGTSDRVVLIVGELQAVKLAHTLIWEMIALISSAANPKEIEWNPREALGILGHNDGVEVSGKITIPAAAGGLILGKGGANIQSISEESG 141
BLAST of mRNA_H-elongata_contig17005.4342.1 vs. uniprot
Match: A0A6P8IIV0_ACTTE (RNA-binding protein Nova-1-like isoform X1 n=2 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8IIV0_ACTTE) HSP 1 Score: 74.3 bits (181), Expect = 3.130e-13 Identity = 39/120 (32.50%), Postives = 68/120 (56.67%), Query Frame = 1
Query: 16 LKLLVSNSMAGTLIGKGGTRICEIKDECLADIKVTPNGRFYPGTHERVVLVVGEPSSVQMACDRIVTTIYT---AADTSLDIT--------QRVLIPDAASGLIIGHDGVRLGDLRHEAG 342
LK+LV N AG++IGKGG I +++ A IK++PN +YPGT ER+ L++GE ++ D ++ I A + +IT ++++P++ +G+IIG G + + + G
Sbjct: 53 LKILVPNYAAGSIIGKGGQNIAQVQQSTGARIKLSPNNHYYPGTQERIGLIIGEVDTIITMLDFVIDKIRQEPQGAKVNSNITFDRERAKQMKIVVPNSTAGMIIGKGGTAIKSISEQTG 172
BLAST of mRNA_H-elongata_contig17005.4342.1 vs. uniprot
Match: T2M3N5_HYDVU (RNA-binding protein Nova-1-like n=1 Tax=Hydra vulgaris TaxID=6087 RepID=T2M3N5_HYDVU) HSP 1 Score: 73.6 bits (179), Expect = 5.980e-13 Identity = 39/115 (33.91%), Postives = 65/115 (56.52%), Query Frame = 1
Query: 16 LKLLVSNSMAGTLIGKGGTRICEIKDECLADIKVTPNGRFYPGTHERVVLVVGEPSSVQMACDRIVTTIYTAA--------DTSLDITQRVLIPDAASGLIIGHDGVRLGDLRHE 336
LK+L+ N AG +IGKGG I E++ A I+++PNG FYPGT ER+V++ G+ S + + I+ ++ + D +++ P+A +GL+IG G + L+ E
Sbjct: 47 LKVLIPNYAAGAIIGKGGANIGELQSRYGAKIRLSPNGEFYPGTEERIVILTGDVSQIIDLHNYIIDKVHADSMEGPKGMRDEDRGQKVKIVCPNATAGLVIGRGGSTIKSLQEE 161
BLAST of mRNA_H-elongata_contig17005.4342.1 vs. uniprot
Match: A7SKT2_NEMVE (Predicted protein n=4 Tax=Nematostella vectensis TaxID=45351 RepID=A7SKT2_NEMVE) HSP 1 Score: 72.4 bits (176), Expect = 1.500e-12 Identity = 38/120 (31.67%), Postives = 68/120 (56.67%), Query Frame = 1
Query: 16 LKLLVSNSMAGTLIGKGGTRICEIKDECLADIKVTPNGRFYPGTHERVVLVVGEPSSVQMACDRIVTTIYTAAD---TSLDIT--------QRVLIPDAASGLIIGHDGVRLGDLRHEAG 342
LK+LV N AG++IGKGG I +++ A IK++PN ++YPGT ER+ L++GE ++ D ++ I S+ I+ ++++P++ +G+IIG G + + + G
Sbjct: 48 LKILVPNYAAGSIIGKGGQNIAQVQQTTGARIKLSPNNQYYPGTQERIGLIMGEVENIVQMLDFVIDKIRQEPQGIKASMSISFDRERAKQMKIIVPNSTAGMIIGKAGSAIKSISEQTG 167 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17005.4342.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig17005.4342.1 >prot_H-elongata_contig17005.4342.1 ID=prot_H-elongata_contig17005.4342.1|Name=mRNA_H-elongata_contig17005.4342.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=115bp SGRFGLKLLVSNSMAGTLIGKGGTRICEIKDECLADIKVTPNGRFYPGTHback to top mRNA from alignment at H-elongata_contig17005:969..2156- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig17005.4342.1 ID=mRNA_H-elongata_contig17005.4342.1|Name=mRNA_H-elongata_contig17005.4342.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1188bp|location=Sequence derived from alignment at H-elongata_contig17005:969..2156- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig17005:969..2156- >mRNA_H-elongata_contig17005.4342.1 ID=mRNA_H-elongata_contig17005.4342.1|Name=mRNA_H-elongata_contig17005.4342.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=690bp|location=Sequence derived from alignment at H-elongata_contig17005:969..2156- (Himanthalia elongata Himel1 dioecious)back to top |