mRNA_H-elongata_contig16965.4322.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig16965.4322.1 vs. uniprot
Match: D8LI93_ECTSI (Similar to sodium channel, voltage-gated, type IX, alpha isoform 5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI93_ECTSI) HSP 1 Score: 271 bits (694), Expect = 1.240e-80 Identity = 134/198 (67.68%), Postives = 163/198 (82.32%), Query Frame = 1
Query: 40 QRLITVLIVLNTVVLAIDHHPLDEEIATYLEAFNFAFTLCFAIEMVIKLAALGARGYAEDRFNLFDGLIVISSLVELILSPPSFLSGGSSLESSTGGLSALRTFRVLRVFKLARSWKSMRELLTTLSRTIVDVGNFGLLLILFMFIYSLIGLQFFANRLHFAEDGHAVGIGVEGYNEAEVPRCNFDSLLNAFTTIFVV 633
+R IT LI+LNT+ LA+DHHP+DEE +T L+ N FTLCFA+EM +KL ALG RGYA+D+FNLFDGL+V+SSLVEL + PP L+GG E GGLSALR+FRVLR+ KLAR W SMR+LL TL +T++D+GNF LLL+LFMFIY LIG+QFFANRLHFAEDG +GIG EGY +AEVPR NFD+LL+AFTT+F V
Sbjct: 226 KRSITTLIILNTLTLALDHHPMDEEFSTVLDLLNLVFTLCFALEMALKLVALGPRGYAKDKFNLFDGLVVLSSLVELAIWPPDILTGGDG-EDWGGGLSALRSFRVLRILKLARGWSSMRDLLETLRKTLLDIGNFALLLLLFMFIYVLIGVQFFANRLHFAEDGRVIGIGEEGYYDAEVPRSNFDTLLHAFTTVFEV 422
BLAST of mRNA_H-elongata_contig16965.4322.1 vs. uniprot
Match: A0A6H5KPD7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPD7_9PHAE) HSP 1 Score: 267 bits (683), Expect = 4.560e-79 Identity = 131/197 (66.50%), Postives = 163/197 (82.74%), Query Frame = 1
Query: 43 RLITVLIVLNTVVLAIDHHPLDEEIATYLEAFNFAFTLCFAIEMVIKLAALGARGYAEDRFNLFDGLIVISSLVELILSPPSFLSGGSSLESSTGGLSALRTFRVLRVFKLARSWKSMRELLTTLSRTIVDVGNFGLLLILFMFIYSLIGLQFFANRLHFAEDGHAVGIGVEGYNEAEVPRCNFDSLLNAFTTIFVV 633
R IT LI+LNT+ LA+DHHP+D++ +T L+ N FTLCFA+EM +KL ALG RGYA+D+FNLFDGL+V+SSLVEL + PP+ L+GG E GGLSALR+FRVLR+ KLAR W SMR+LL TL +T++D+GNF LLL+LFMFIY LIG+QFFANRLHFAEDG +GIG EGY +A+VPR NFD+LL+AFTT+F V
Sbjct: 613 RSITTLIILNTLTLALDHHPMDDDFSTVLDLLNLVFTLCFALEMALKLVALGPRGYAKDKFNLFDGLVVLSSLVELAIWPPNILTGGEG-EDWGGGLSALRSFRVLRILKLARGWSSMRDLLETLRKTLLDIGNFALLLLLFMFIYVLIGVQFFANRLHFAEDGRVIGIGEEGYYDAKVPRSNFDTLLHAFTTVFEV 808
BLAST of mRNA_H-elongata_contig16965.4322.1 vs. uniprot
Match: D7FVE6_ECTSI (Voltage Gated Calcium/Sodium Channel subunit alpha n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVE6_ECTSI) HSP 1 Score: 241 bits (616), Expect = 4.880e-70 Identity = 123/198 (62.12%), Postives = 148/198 (74.75%), Query Frame = 1
Query: 40 QRLITVLIVLNTVVLAIDHHPLDEEIATYLEAFNFAFTLCFAIEMVIKLAALGARGYAEDRFNLFDGLIVISSLVELILSPPSFLSGGSSLESSTGGLSALRTFRVLRVFKLARSWKSMRELLTTLSRTIVDVGNFGLLLILFMFIYSLIGLQFFANRLHFAEDGHAVGIGVEGYNEAEVPRCNFDSLLNAFTTIFVV 633
Q IT+LIVLNT+VLA+DHHP+DEE +TYLE FNFAF+LCF +EM +K+AALG R YA+D FNLFDG IVIS L+ELILSPP L+G + KLAR W SMRELL TL +T++D+GNFG+LL+LFM+IY+L+GLQFFANR HF E G VGIG GY AEVPR NFD+L+NAFTTIF +
Sbjct: 494 QNSITLLIVLNTLVLALDHHPMDEEFSTYLEVFNFAFSLCFMLEMALKVAALGPREYAKDNFNLFDGFIVISGLLELILSPPDILTGETG-NXXXXXXXXXXXXXXXXXXKLAREWHSMRELLNTLGKTLLDIGNFGMLLVLFMYIYALVGLQFFANRFHFNEVGEVVGIGEPGYYTAEVPRSNFDTLMNAFTTIFEI 690
BLAST of mRNA_H-elongata_contig16965.4322.1 vs. uniprot
Match: A0A6H5JIB7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIB7_9PHAE) HSP 1 Score: 214 bits (544), Expect = 2.230e-60 Identity = 110/187 (58.82%), Postives = 132/187 (70.59%), Query Frame = 1
Query: 91 DHHPLDEEIATYLEAFNFAFTLCFAIEMVIK-----LAALGARGYAEDRFNLFDGLIVISSLVELILSPPSFLSGGSSLESSTGGLSALRTFRVLRVFKLARSWKSMRELLTTLSRTIVDVGNFGLLLILFMFIYSLIGLQFFANRLHFAEDGHAVGIGVEGYNEAEVPRCNFDSLLNAFTTIFVVS 636
DHHP+DEE +TY+E FNFAF+LCF +EM +K +AALG R YA+D FNLFDG IVIS L+ELILSPP L+G + KLAR W SMRELL TL +T++D+GNFG+LL+LFM+IY+L+GLQFFANR F E G VGIG GY AEVPR NFD+L+NAFTTIF S
Sbjct: 2 DHHPMDEEFSTYVEVFNFAFSLCFMLEMALKVGLYRIAALGPREYAKDNFNLFDGFIVISGLLELILSPPDILTGETG-NXXXXXXXXXXXXXXXXXXKLAREWHSMRELLNTLGKTLLDIGNFGMLLVLFMYIYALVGLQFFANRFRFNEVGEVVGIGEPGYYTAEVPRSNFDTLMNAFTTIFEAS 187
BLAST of mRNA_H-elongata_contig16965.4322.1 vs. uniprot
Match: A0A8K1CR88_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CR88_PYTOL) HSP 1 Score: 187 bits (475), Expect = 4.230e-51 Identity = 94/201 (46.77%), Postives = 139/201 (69.15%), Query Frame = 1
Query: 31 PFVQRLITVLIVLNTVVLAIDHHPLDEEIATYLEAFNFAFTLCFAIEMVIKLAALGARGYAEDRFNLFDGLIVISSLVELILSPPSFLSGGSSLESSTGGLSALRTFRVLRVFKLARSWKSMRELLTTLSRTIVDVGNFGLLLILFMFIYSLIGLQFFANRLHFAEDGHAVGIGVEGYNEAEVPRCNFDSLLNAFTTIFVV 633
P I + IV NT +LA+DH+P+ + + LE NF + F +EMV+KL LG R YA D+FN+FD +VI+ L+E I +PPSF+S S+++ G +SALR+FR+ RVFKLAR+W+S+RELL ++R + + NFG+LL LF++IY+LIGLQ F N + F ++G+A+ + + E E+PR NFD+LL + T+F V
Sbjct: 697 PIFSGFIMLAIVANTTILALDHYPMPPGLDSDLEIVNFGLSCVFMLEMVLKLIGLGLRQYARDKFNVFDAFVVITGLLETIATPPSFMS--SNVKKKKGAVSALRSFRLSRVFKLARNWRSLRELLQLIARAVASIANFGVLLFLFIYIYALIGLQIFGNTMRFDDEGYAIPMDSPTFWEGELPRNNFDTLLWSMITVFQV 895
BLAST of mRNA_H-elongata_contig16965.4322.1 vs. uniprot
Match: A0A2D4C0A0_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C0A0_PYTIN) HSP 1 Score: 186 bits (473), Expect = 7.750e-51 Identity = 98/201 (48.76%), Postives = 135/201 (67.16%), Query Frame = 1
Query: 31 PFVQRLITVLIVLNTVVLAIDHHPLDEEIATYLEAFNFAFTLCFAIEMVIKLAALGARGYAEDRFNLFDGLIVISSLVELILSPPSFLSGGSSLESSTGGLSALRTFRVLRVFKLARSWKSMRELLTTLSRTIVDVGNFGLLLILFMFIYSLIGLQFFANRLHFAEDGHAVGIGVEGYNEAEVPRCNFDSLLNAFTTIFVV 633
P +I V+I NT+VLA+DH+P+ + LE NF + F +EMV+KL LG + YA D+FN+FD IV ++E + +PPSFLS SS + GG+SALR+FR+ RVFKLAR+W S+RELL + R + +GNF +LL +F++IY+LIGLQFFAN L F +DG+ + + + VPR NFDSLL A T+F V
Sbjct: 438 PIFGAIIMVVITANTIVLALDHYPMPPALDNDLEIINFGLSCVFLLEMVLKLFGLGLKQYARDQFNIFDAFIVTMGVLETVATPPSFLS--SSNTTKRGGVSALRSFRLFRVFKLARNWSSLRELLALIVRAVASIGNFAVLLSIFIYIYALIGLQFFANTLRFDKDGYPINNKDPTFWQGTVPRNNFDSLLWAVQTVFQV 636
BLAST of mRNA_H-elongata_contig16965.4322.1 vs. uniprot
Match: D0N7Y8_PHYIT (Voltage-gated Ion Channel (VIC) Superfamily n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0N7Y8_PHYIT) HSP 1 Score: 173 bits (439), Expect = 4.670e-48 Identity = 83/188 (44.15%), Postives = 125/188 (66.49%), Query Frame = 1
Query: 70 NTVVLAIDHHPLDEEIATYLEAFNFAFTLCFAIEMVIKLAALGARGYAEDRFNLFDGLIVISSLVELILSPPSFLSGGSSLESSTGGLSALRTFRVLRVFKLARSWKSMRELLTTLSRTIVDVGNFGLLLILFMFIYSLIGLQFFANRLHFAEDGHAVGIGVEGYNEAEVPRCNFDSLLNAFTTIFVV 633
NT VL++DH+P+ + + LE NFA T F EM++K+A LG Y D+FNLFD +V+ L+E+ LSPPSF+S + G +++LR+FR+LRVFKLAR+WKS+RELL + R + + NFG+LL +F++IY+L+G+QFF N + F +G+ + Y VPR +FD+ L + T+F +
Sbjct: 291 NTAVLSMDHYPMSDTMDADLEIINFALTCVFVAEMIMKVAGLGIHLYTRDKFNLFDAFVVLMGLLEMALSPPSFMSEN---QPKKGSVASLRSFRLLRVFKLARNWKSLRELLEMVGRALASIANFGVLLFIFIYIYALVGMQFFGNTMRFDSNGYPTPYNIYDYWSGTVPRLHFDTFLWSAITVFKI 475
BLAST of mRNA_H-elongata_contig16965.4322.1 vs. uniprot
Match: A0A5A8D1B5_CAFRO (Ion_trans domain-containing protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D1B5_CAFRO) HSP 1 Score: 172 bits (435), Expect = 5.020e-48 Identity = 92/196 (46.94%), Postives = 135/196 (68.88%), Query Frame = 1
Query: 49 ITVLIVLNTVVLAIDHHPLDEEIATYLEAFNFAFTLCFAIEMVIKLAALGARGYAEDRFNLFDGLIVISSLVELILSPPSFLSGGSSLESSTGGLSALRTFRVLRVFKLARSWKSMRELLTTLSRTIVDVGNFGLLLILFMFIYSLIGLQFFANRLHF-AEDGHAVGIGVEGYNEAEVPRCNFDSLLNAFTTIFVV 633
I + I++NTVVLA+D +P+D E A E NF ++ F +EM++KLAA+G R Y++D FN+FD +IVI S+VE+ +SPP FL GGS+ + GG+SALRTFR+LR+ KLAR+W S+R LL T+ ++ +VGNF + +LF+ + +L G FANR F A+ G ++ + ++ AE NFD L +AF +FVV
Sbjct: 75 IVLAILVNTVVLALDSYPVDTERARVAEILNFILSVVFLLEMLLKLAAMGPRAYSQDAFNVFDAVIVIISVVEVAVSPPVFL-GGSAAGTDAGGVSALRTFRLLRILKLARAWVSLRVLLATVLASLSEVGNFAAVTLLFVMVIALFGAFSFANRFRFNAKTGQSLAMTDPAFSSAEPSPINFDDLWSAFVAVFVV 269
BLAST of mRNA_H-elongata_contig16965.4322.1 vs. uniprot
Match: G4YKH5_PHYSP (Uncharacterized protein n=7 Tax=Phytophthora TaxID=4783 RepID=G4YKH5_PHYSP) HSP 1 Score: 177 bits (450), Expect = 9.400e-48 Identity = 89/194 (45.88%), Postives = 137/194 (70.62%), Query Frame = 1
Query: 52 TVLIVLNTVVLAIDHHPLDEEIATYLEAFNFAFTLCFAIEMVIKLAALGARGYAEDRFNLFDGLIVISSLVELILSPPSFLSGGSSLESSTGGLSALRTFRVLRVFKLARSWKSMRELLTTLSRTIVDVGNFGLLLILFMFIYSLIGLQFFANRLHFAEDGHAVGIGVEGYNEAEVPRCNFDSLLNAFTTIFVV 633
T+LI+LNT++L++D +P+D+++ +E NFA TL F IE ++K++ LG +G+ DR+NLFD ++++ S E+ILSPP+F+ S+ S T S LR+FR+ +FKLARSW S+++LLTT+ T+ +VGNF +L +LF++IY+LIG+Q FANR F E G V + A VPR NFD++L + T+F +
Sbjct: 356 TILILLNTIILSLDQYPIDQKLNETVEKINFALTLAFIIEALLKVSGLGWKGWVADRYNLFDAMVIVVSATEMILSPPTFIHQQSTT-SKTASFSGLRSFRLFALFKLARSWPSLQKLLTTMISTLHEVGNFCVLFLLFLYIYALIGMQTFANRFRFDEYGFPVD---RNHEAAYVPRANFDTMLWSVVTVFQI 545
BLAST of mRNA_H-elongata_contig16965.4322.1 vs. uniprot
Match: A0A329SQS1_9STRA (Sodium channel protein type 4 subunit alpha B n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SQS1_9STRA) HSP 1 Score: 176 bits (445), Expect = 4.460e-47 Identity = 86/201 (42.79%), Postives = 128/201 (63.68%), Query Frame = 1
Query: 31 PFVQRLITVLIVLNTVVLAIDHHPLDEEIATYLEAFNFAFTLCFAIEMVIKLAALGARGYAEDRFNLFDGLIVISSLVELILSPPSFLSGGSSLESSTGGLSALRTFRVLRVFKLARSWKSMRELLTTLSRTIVDVGNFGLLLILFMFIYSLIGLQFFANRLHFAEDGHAVGIGVEGYNEAEVPRCNFDSLLNAFTTIFVV 633
P ++ +I NT VL++DH+P+ + LE NFA T F EM+IK+A LG Y D+FNLFD +V+ L+E+ LSPPSF+S + G +S+LR+FR+LRVFKLAR+W+S+RELL + + + NFG+LL +F++IY+L+G+QFF N + F +G+ + Y VPR NFD+ L + T+F +
Sbjct: 486 PVFSSVVMYIIFANTAVLSLDHYPMSGTMDADLEIINFALTCVFVAEMIIKVAGLGIHLYTRDKFNLFDAFVVLMGLLEMALSPPSFMSEN---QPKKGSVSSLRSFRLLRVFKLARNWRSLRELLEMVGHALASIANFGVLLFIFIYIYALVGMQFFGNTMRFDSNGYPTPYNINDYWSGTVPRLNFDTFLWSTITVFKI 683 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16965.4322.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig16965.4322.1 >prot_H-elongata_contig16965.4322.1 ID=prot_H-elongata_contig16965.4322.1|Name=mRNA_H-elongata_contig16965.4322.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=214bp RLSCPPSLCPPFVQRLITVLIVLNTVVLAIDHHPLDEEIATYLEAFNFAFback to top mRNA from alignment at H-elongata_contig16965:6247..7449+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig16965.4322.1 ID=mRNA_H-elongata_contig16965.4322.1|Name=mRNA_H-elongata_contig16965.4322.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1203bp|location=Sequence derived from alignment at H-elongata_contig16965:6247..7449+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig16965:6247..7449+ >mRNA_H-elongata_contig16965.4322.1 ID=mRNA_H-elongata_contig16965.4322.1|Name=mRNA_H-elongata_contig16965.4322.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1284bp|location=Sequence derived from alignment at H-elongata_contig16965:6247..7449+ (Himanthalia elongata Himel1 dioecious)back to top |