mRNA_H-elongata_contig169546.4313.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig169546.4313.1
Unique NamemRNA_H-elongata_contig169546.4313.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig169546.4313.1 vs. uniprot
Match: D8LEE2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEE2_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 6.370e-15
Identity = 41/68 (60.29%), Postives = 48/68 (70.59%), Query Frame = 1 
Query:  142 ISGCSGG-----------GESRRALRLLREMEVDPRSEARPEPLTYSLVLKACGRDGQWETALELLAE 312
            I+GCS G           GE  RALRLL EM  DPR EA+PE L+Y+LVLKACGR+G+WETAL+LL E
Sbjct:  323 ITGCSCGPXXXXXXXXXXGEVERALRLLEEMAADPRPEAQPEALSYTLVLKACGREGRWETALQLLTE 390
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BLAST of mRNA_H-elongata_contig169546.4313.1 vs. uniprot
Match: A0A0G4F8K7_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4F8K7_VITBC)

HSP 1 Score: 57.0 bits (136), Expect = 3.130e-7
Identity = 32/96 (33.33%), Postives = 53/96 (55.21%), Query Frame = 1 
Query:   19 VTFTSGISAASRSGRVASAEEILHRMHLEGVLPNTASYNAAISGCSGGGESRRALRLLREME--VDPRSEARPEPLTYSLVLKACGRDGQWETALE 300
            V+F S ++A +++G  A A +    M   GV PN  +Y+  I   +  G   +A ++L++ME   +  S   P  +TYS ++KACGR GQ   A++
Sbjct:  153 VSFCSVMNAHAKTGDFAKANDTFALMVSRGVSPNERAYSILIDAYAQWGHVDKAFQVLQDMESRAEDGSSCMPNAVTYSSLIKACGRGGQVNLAIQ 248
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig169546.4313.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LEE2_ECTSI6.370e-1560.29Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A0G4F8K7_VITBC3.130e-733.33Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig169546contigH-elongata_contig169546:27..338 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score78.2
Seed ortholog evalue2.6e-12
Seed eggNOG ortholog2880.D8LEE2
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorymitochondrion
Exons1
Model size312
Cds size312
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929989.0255585-CDS-H-elongata_contig169546:26..3381622929989.0255585-CDS-H-elongata_contig169546:26..338Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig169546 27..338 +
1691679236.5064008-CDS-H-elongata_contig169546:26..3381691679236.5064008-CDS-H-elongata_contig169546:26..338Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig169546 27..338 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig169546.4313.1prot_H-elongata_contig169546.4313.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig169546 27..338 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig169546.4313.1

>prot_H-elongata_contig169546.4313.1 ID=prot_H-elongata_contig169546.4313.1|Name=mRNA_H-elongata_contig169546.4313.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=104bp
MLIIIKVTFTSGISAASRSGRVASAEEILHRMHLEGVLPNTASYNAAISG
CSGGGESRRALRLLREMEVDPRSEARPEPLTYSLVLKACGRDGQWETALE
LLAE
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mRNA from alignment at H-elongata_contig169546:27..338+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig169546.4313.1 ID=mRNA_H-elongata_contig169546.4313.1|Name=mRNA_H-elongata_contig169546.4313.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=312bp|location=Sequence derived from alignment at H-elongata_contig169546:27..338+ (Himanthalia elongata Himel1 dioecious)
ATGCTAATAATAATAAAGGTGACCTTTACCAGCGGCATCTCGGCCGCTTC
CCGGAGCGGGAGAGTTGCCTCGGCAGAAGAGATCCTCCACAGGATGCACC
TGGAAGGCGTTCTTCCCAATACCGCCTCGTACAACGCCGCCATCTCGGGG
TGCTCAGGCGGCGGCGAGTCGAGGCGAGCGCTGCGGCTCCTGCGGGAGAT
GGAAGTCGACCCTCGGTCGGAGGCTCGACCCGAACCACTGACCTACTCGT
TAGTGTTGAAAGCCTGCGGAAGGGATGGGCAGTGGGAGACGGCTCTGGAG
CTCCTGGCGGAG
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Coding sequence (CDS) from alignment at H-elongata_contig169546:27..338+

>mRNA_H-elongata_contig169546.4313.1 ID=mRNA_H-elongata_contig169546.4313.1|Name=mRNA_H-elongata_contig169546.4313.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=624bp|location=Sequence derived from alignment at H-elongata_contig169546:27..338+ (Himanthalia elongata Himel1 dioecious)
ATGCTAATAATAATAAAGGTGACCTTTACCAGCGGCATCTCGGCCGCTTC
CCGGAGCGGGAGAGTTGCCTCGGCAGAAGAGATCCTCCACAGGATGCACC
TGGAAGGCGTTCTTCCCAATACCGCCTCGTACAACGCCGCCATCTCGGGG
TGCTCAGGCGGCGGCGAGTCGAGGCGAGCGCTGCGGCTCCTGCGGGAGAT
GGAAGTCGACCCTCGGTCGGAGGCTCGACCCGAACCACTGACCTACTCGT
TAGTGTTGAAAGCCTGCGGAAGGGATGGGCAGTGGGAGACGGCTCTGGAG
CTCCTGGCGGAGATGCTAATAATAATAAAGGTGACCTTTACCAGCGGCAT
CTCGGCCGCTTCCCGGAGCGGGAGAGTTGCCTCGGCAGAAGAGATCCTCC
ACAGGATGCACCTGGAAGGCGTTCTTCCCAATACCGCCTCGTACAACGCC
GCCATCTCGGGGTGCTCAGGCGGCGGCGAGTCGAGGCGAGCGCTGCGGCT
CCTGCGGGAGATGGAAGTCGACCCTCGGTCGGAGGCTCGACCCGAACCAC
TGACCTACTCGTTAGTGTTGAAAGCCTGCGGAAGGGATGGGCAGTGGGAG
ACGGCTCTGGAGCTCCTGGCGGAG
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